data_5WS0
#
_model_server_result.job_id            RQnWC0qV9xSDwVN33jGreQ 
_model_server_result.datetime_utc      '2025-07-30 17:00:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ws0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1101}' 
#
_entry.id    5WS0 
#
_exptl.entry_id    5WS0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              273.291 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-piperazin-1-ylcarbonyl-1H-benzimidazole-4-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5WS0 
_cell.length_a            48.59 
_cell.length_b            92.11 
_cell.length_c            163.73 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5WS0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C 1 1 
B,D 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C13 H15 N5 O2' 
_chem_comp.formula_weight    273.291 
_chem_comp.id                7U6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-piperazin-1-ylcarbonyl-1H-benzimidazole-4-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAB CAN 7U6 doub 1 n n 
CAN NAA 7U6 sing 2 n n 
CAN CAP 7U6 sing 3 n n 
CAP CAE 7U6 sing 4 n y 
CAP CAS 7U6 doub 5 n y 
CAE CAD 7U6 doub 6 n y 
CAS NAK 7U6 sing 7 n y 
CAS CAR 7U6 sing 8 n y 
CAD CAF 7U6 sing 9 n y 
NAK CAQ 7U6 doub 10 n y 
CAR CAF 7U6 doub 11 n y 
CAR NAM 7U6 sing 12 n y 
NAL CAG 7U6 sing 13 n n 
NAL CAH 7U6 sing 14 n n 
CAI NAT 7U6 sing 15 n n 
CAI CAG 7U6 sing 16 n n 
CAQ CAO 7U6 sing 17 n n 
CAQ NAM 7U6 sing 18 n y 
NAT CAO 7U6 sing 19 n n 
NAT CAJ 7U6 sing 20 n n 
CAO OAC 7U6 doub 21 n n 
CAH CAJ 7U6 sing 22 n n 
CAI H1 7U6 sing 23 n n 
CAI H2 7U6 sing 24 n n 
CAG H3 7U6 sing 25 n n 
CAG H4 7U6 sing 26 n n 
NAL H5 7U6 sing 27 n n 
CAH H7 7U6 sing 28 n n 
CAH H8 7U6 sing 29 n n 
CAJ H9 7U6 sing 30 n n 
CAJ H10 7U6 sing 31 n n 
NAM H11 7U6 sing 32 n n 
CAF H13 7U6 sing 33 n n 
CAD H14 7U6 sing 34 n n 
CAE H15 7U6 sing 35 n n 
NAA H16 7U6 sing 36 n n 
NAA H17 7U6 sing 37 n n 
#
_atom_sites.entry_id                     5WS0 
_atom_sites.fract_transf_matrix[1][1]    0.02058 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010857 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006108 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 7U6 A 1 1101 1 7U6 DRG . 
D 2 7U6 B 1 1101 1 7U6 DRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAI 7U6 . . . D 2 3.888 -19.262 33.825 1 29.92 ? CAI 7U6 1101 B 1 
HETATM 2 C CAG 7U6 . . . D 2 5.211 -18.649 33.57 1 31.01 ? CAG 7U6 1101 B 1 
HETATM 3 N NAL 7U6 . . . D 2 5.795 -19.31 32.389 1 32.55 ? NAL 7U6 1101 B 1 
HETATM 4 C CAH 7U6 . . . D 2 4.937 -18.999 31.227 1 32.9 ? CAH 7U6 1101 B 1 
HETATM 5 C CAJ 7U6 . . . D 2 3.635 -19.802 31.39 1 30.68 ? CAJ 7U6 1101 B 1 
HETATM 6 N NAT 7U6 . . . D 2 2.962 -19.278 32.612 1 28.46 ? NAT 7U6 1101 B 1 
HETATM 7 C CAO 7U6 . . . D 2 1.654 -18.831 32.532 1 25.44 ? CAO 7U6 1101 B 1 
HETATM 8 O OAC 7U6 . . . D 2 1.048 -18.92 31.49 1 26.4 ? OAC 7U6 1101 B 1 
HETATM 9 C CAQ 7U6 . . . D 2 0.874 -18.42 33.553 1 22.88 ? CAQ 7U6 1101 B 1 
HETATM 10 N NAM 7U6 . . . D 2 -0.308 -17.819 33.479 1 20.65 ? NAM 7U6 1101 B 1 
HETATM 11 N NAK 7U6 . . . D 2 1.1 -18.674 34.82 1 22.23 ? NAK 7U6 1101 B 1 
HETATM 12 C CAS 7U6 . . . D 2 0.155 -18.204 35.591 1 20.82 ? CAS 7U6 1101 B 1 
HETATM 13 C CAR 7U6 . . . D 2 -0.744 -17.655 34.731 1 20.67 ? CAR 7U6 1101 B 1 
HETATM 14 C CAF 7U6 . . . D 2 -1.847 -17.068 35.207 1 19.88 ? CAF 7U6 1101 B 1 
HETATM 15 C CAD 7U6 . . . D 2 -2.073 -17.051 36.582 1 19.44 ? CAD 7U6 1101 B 1 
HETATM 16 C CAE 7U6 . . . D 2 -1.137 -17.612 37.443 1 18.85 ? CAE 7U6 1101 B 1 
HETATM 17 C CAP 7U6 . . . D 2 0.019 -18.224 36.933 1 19.65 ? CAP 7U6 1101 B 1 
HETATM 18 C CAN 7U6 . . . D 2 0.954 -18.812 37.85 1 20.61 ? CAN 7U6 1101 B 1 
HETATM 19 O OAB 7U6 . . . D 2 0.692 -18.95 39.061 1 20.85 ? OAB 7U6 1101 B 1 
HETATM 20 N NAA 7U6 . . . D 2 2.17 -19.209 37.446 1 20.62 ? NAA 7U6 1101 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           20 
#