data_5WS1
#
_model_server_result.job_id            3vuPKCACp26-Ec0Ov4hiww 
_model_server_result.datetime_utc      '2024-11-13 14:34:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ws1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1101}' 
#
_entry.id    5WS1 
#
_exptl.entry_id    5WS1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              273.291 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[(3R)-3-azanylpyrrolidin-1-yl]carbonyl-1H-benzimidazole-4-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5WS1 
_cell.length_a            48.71 
_cell.length_b            91.87 
_cell.length_c            162.23 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5WS1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C 1 1 
B,D 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C13 H15 N5 O2' 
_chem_comp.formula_weight    273.291 
_chem_comp.id                7U9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[(3R)-3-azanylpyrrolidin-1-yl]carbonyl-1H-benzimidazole-4-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAC CAM 7U9 doub 1 n n 
NAA CAM 7U9 sing 2 n n 
CAM CAO 7U9 sing 3 n n 
CAO CAF 7U9 sing 4 n y 
CAO CAR 7U9 doub 5 n y 
CAF CAE 7U9 doub 6 n y 
CAH CAI 7U9 sing 7 n n 
CAH CAS 7U9 sing 8 n n 
CAI NAT 7U9 sing 9 n n 
CAR NAK 7U9 sing 10 n y 
CAR CAQ 7U9 sing 11 n y 
NAK CAP 7U9 doub 12 n y 
CAE CAG 7U9 sing 13 n y 
CAS NAB 7U9 sing 14 n n 
CAS CAJ 7U9 sing 15 n n 
NAT CAN 7U9 sing 16 n n 
NAT CAJ 7U9 sing 17 n n 
CAQ CAG 7U9 doub 18 n y 
CAQ NAL 7U9 sing 19 n y 
CAP CAN 7U9 sing 20 n n 
CAP NAL 7U9 sing 21 n y 
CAN OAD 7U9 doub 22 n n 
CAJ H1 7U9 sing 23 n n 
CAJ H2 7U9 sing 24 n n 
CAS H3 7U9 sing 25 n n 
NAB H4 7U9 sing 26 n n 
NAB H5 7U9 sing 27 n n 
CAH H7 7U9 sing 28 n n 
CAH H8 7U9 sing 29 n n 
CAI H9 7U9 sing 30 n n 
CAI H10 7U9 sing 31 n n 
NAL H11 7U9 sing 32 n n 
CAG H13 7U9 sing 33 n n 
CAE H14 7U9 sing 34 n n 
CAF H15 7U9 sing 35 n n 
NAA H16 7U9 sing 36 n n 
NAA H17 7U9 sing 37 n n 
#
_atom_sites.entry_id                     5WS1 
_atom_sites.fract_transf_matrix[1][1]    0.02053 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010885 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006164 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 7U9 A 1 1101 1 7U9 DRG . 
D 2 7U9 B 1 1101 1 7U9 DRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAJ 7U9 . . . D 2 3.968 -19.208 31.148 1 27.9 ? CAJ 7U9 1101 B 1 
HETATM 2 C CAS 7U9 . . . D 2 5.088 -19.301 32.251 1 29.12 ? CAS 7U9 1101 B 1 
HETATM 3 N NAB 7U9 . . . D 2 6.494 -19.439 31.922 1 31.96 ? NAB 7U9 1101 B 1 
HETATM 4 C CAH 7U9 . . . D 2 4.653 -20.51 32.998 1 27.78 ? CAH 7U9 1101 B 1 
HETATM 5 C CAI 7U9 . . . D 2 3.412 -19.753 33.447 1 25.82 ? CAI 7U9 1101 B 1 
HETATM 6 N NAT 7U9 . . . D 2 2.881 -18.944 32.269 1 23.3 ? NAT 7U9 1101 B 1 
HETATM 7 C CAN 7U9 . . . D 2 1.718 -18.257 32.193 1 23.66 ? CAN 7U9 1101 B 1 
HETATM 8 O OAD 7U9 . . . D 2 1.488 -17.631 31.146 1 29.42 ? OAD 7U9 1101 B 1 
HETATM 9 C CAP 7U9 . . . D 2 0.892 -18.001 33.277 1 16.6 ? CAP 7U9 1101 B 1 
HETATM 10 N NAL 7U9 . . . D 2 -0.318 -17.418 33.271 1 14.84 ? NAL 7U9 1101 B 1 
HETATM 11 N NAK 7U9 . . . D 2 1.172 -18.202 34.561 1 14.64 ? NAK 7U9 1101 B 1 
HETATM 12 C CAR 7U9 . . . D 2 0.185 -17.807 35.386 1 12.73 ? CAR 7U9 1101 B 1 
HETATM 13 C CAQ 7U9 . . . D 2 -0.769 -17.275 34.56 1 12.85 ? CAQ 7U9 1101 B 1 
HETATM 14 C CAG 7U9 . . . D 2 -1.906 -16.732 35.074 1 12.47 ? CAG 7U9 1101 B 1 
HETATM 15 C CAE 7U9 . . . D 2 -2.087 -16.73 36.466 1 12.67 ? CAE 7U9 1101 B 1 
HETATM 16 C CAF 7U9 . . . D 2 -1.099 -17.302 37.296 1 11.32 ? CAF 7U9 1101 B 1 
HETATM 17 C CAO 7U9 . . . D 2 0.086 -17.831 36.742 1 11.35 ? CAO 7U9 1101 B 1 
HETATM 18 C CAM 7U9 . . . D 2 1.05 -18.451 37.633 1 10.68 ? CAM 7U9 1101 B 1 
HETATM 19 O OAC 7U9 . . . D 2 0.752 -18.717 38.801 1 9.61 ? OAC 7U9 1101 B 1 
HETATM 20 N NAA 7U9 . . . D 2 2.238 -18.883 37.206 1 9.87 ? NAA 7U9 1101 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#