data_5WS1 # _model_server_result.job_id i_lUgx2xZiR04Ew-8owpBw _model_server_result.datetime_utc '2024-11-23 04:44:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ws1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1101}' # _entry.id 5WS1 # _exptl.entry_id 5WS1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 273.291 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(3R)-3-azanylpyrrolidin-1-yl]carbonyl-1H-benzimidazole-4-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WS1 _cell.length_a 48.71 _cell.length_b 91.87 _cell.length_c 162.23 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WS1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C13 H15 N5 O2' _chem_comp.formula_weight 273.291 _chem_comp.id 7U9 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(3R)-3-azanylpyrrolidin-1-yl]carbonyl-1H-benzimidazole-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAC CAM 7U9 doub 1 n n NAA CAM 7U9 sing 2 n n CAM CAO 7U9 sing 3 n n CAO CAF 7U9 sing 4 n y CAO CAR 7U9 doub 5 n y CAF CAE 7U9 doub 6 n y CAH CAI 7U9 sing 7 n n CAH CAS 7U9 sing 8 n n CAI NAT 7U9 sing 9 n n CAR NAK 7U9 sing 10 n y CAR CAQ 7U9 sing 11 n y NAK CAP 7U9 doub 12 n y CAE CAG 7U9 sing 13 n y CAS NAB 7U9 sing 14 n n CAS CAJ 7U9 sing 15 n n NAT CAN 7U9 sing 16 n n NAT CAJ 7U9 sing 17 n n CAQ CAG 7U9 doub 18 n y CAQ NAL 7U9 sing 19 n y CAP CAN 7U9 sing 20 n n CAP NAL 7U9 sing 21 n y CAN OAD 7U9 doub 22 n n CAJ H1 7U9 sing 23 n n CAJ H2 7U9 sing 24 n n CAS H3 7U9 sing 25 n n NAB H4 7U9 sing 26 n n NAB H5 7U9 sing 27 n n CAH H7 7U9 sing 28 n n CAH H8 7U9 sing 29 n n CAI H9 7U9 sing 30 n n CAI H10 7U9 sing 31 n n NAL H11 7U9 sing 32 n n CAG H13 7U9 sing 33 n n CAE H14 7U9 sing 34 n n CAF H15 7U9 sing 35 n n NAA H16 7U9 sing 36 n n NAA H17 7U9 sing 37 n n # _atom_sites.entry_id 5WS1 _atom_sites.fract_transf_matrix[1][1] 0.02053 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010885 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006164 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 7U9 A 1 1101 1 7U9 DRG . D 2 7U9 B 1 1101 1 7U9 DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAJ 7U9 . . . D 2 3.968 -19.208 31.148 1 27.9 ? CAJ 7U9 1101 B 1 HETATM 2 C CAS 7U9 . . . D 2 5.088 -19.301 32.251 1 29.12 ? CAS 7U9 1101 B 1 HETATM 3 N NAB 7U9 . . . D 2 6.494 -19.439 31.922 1 31.96 ? NAB 7U9 1101 B 1 HETATM 4 C CAH 7U9 . . . D 2 4.653 -20.51 32.998 1 27.78 ? CAH 7U9 1101 B 1 HETATM 5 C CAI 7U9 . . . D 2 3.412 -19.753 33.447 1 25.82 ? CAI 7U9 1101 B 1 HETATM 6 N NAT 7U9 . . . D 2 2.881 -18.944 32.269 1 23.3 ? NAT 7U9 1101 B 1 HETATM 7 C CAN 7U9 . . . D 2 1.718 -18.257 32.193 1 23.66 ? CAN 7U9 1101 B 1 HETATM 8 O OAD 7U9 . . . D 2 1.488 -17.631 31.146 1 29.42 ? OAD 7U9 1101 B 1 HETATM 9 C CAP 7U9 . . . D 2 0.892 -18.001 33.277 1 16.6 ? CAP 7U9 1101 B 1 HETATM 10 N NAL 7U9 . . . D 2 -0.318 -17.418 33.271 1 14.84 ? NAL 7U9 1101 B 1 HETATM 11 N NAK 7U9 . . . D 2 1.172 -18.202 34.561 1 14.64 ? NAK 7U9 1101 B 1 HETATM 12 C CAR 7U9 . . . D 2 0.185 -17.807 35.386 1 12.73 ? CAR 7U9 1101 B 1 HETATM 13 C CAQ 7U9 . . . D 2 -0.769 -17.275 34.56 1 12.85 ? CAQ 7U9 1101 B 1 HETATM 14 C CAG 7U9 . . . D 2 -1.906 -16.732 35.074 1 12.47 ? CAG 7U9 1101 B 1 HETATM 15 C CAE 7U9 . . . D 2 -2.087 -16.73 36.466 1 12.67 ? CAE 7U9 1101 B 1 HETATM 16 C CAF 7U9 . . . D 2 -1.099 -17.302 37.296 1 11.32 ? CAF 7U9 1101 B 1 HETATM 17 C CAO 7U9 . . . D 2 0.086 -17.831 36.742 1 11.35 ? CAO 7U9 1101 B 1 HETATM 18 C CAM 7U9 . . . D 2 1.05 -18.451 37.633 1 10.68 ? CAM 7U9 1101 B 1 HETATM 19 O OAC 7U9 . . . D 2 0.752 -18.717 38.801 1 9.61 ? OAC 7U9 1101 B 1 HETATM 20 N NAA 7U9 . . . D 2 2.238 -18.883 37.206 1 9.87 ? NAA 7U9 1101 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #