data_5WSA # _model_server_result.job_id jWof8wyhDToKHpi-eGVRFg _model_server_result.datetime_utc '2024-10-19 15:47:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wsa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":502}' # _entry.id 5WSA # _exptl.entry_id 5WSA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5WSA _cell.length_a 125.42 _cell.length_b 125.42 _cell.length_c 144.192 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WSA _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 J N N ? 3 N N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C NH1 ARG 95 C ARG 92 1_555 C OE1 GLU 140 C GLU 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? metalc ? metalc1 A OE1 GLU 223 A GLU 220 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc2 A OD2 ASP 247 A ASP 244 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc3 F MG MG . A MG 502 1_555 G O1 OXL . A OXL 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc4 F MG MG . A MG 502 1_555 G O4 OXL . A OXL 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc5 F MG MG . A MG 502 1_555 U O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? metalc ? metalc6 B OE1 GLU 223 B GLU 220 1_555 J MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc7 B OD2 ASP 247 B ASP 244 1_555 J MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc8 J MG MG . B MG 502 1_555 K O4 OXL . B OXL 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc9 J MG MG . B MG 502 1_555 K O3 OXL . B OXL 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc10 J MG MG . B MG 502 1_555 V O HOH . B HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc11 C OE1 GLU 223 C GLU 220 1_555 N MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc12 C OD2 ASP 247 C ASP 244 1_555 N MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc13 N MG MG . C MG 502 1_555 O O1 OXL . C OXL 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc14 N MG MG . C MG 502 1_555 O O4 OXL . C OXL 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc15 N MG MG . C MG 502 1_555 W O HOH . C HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc16 D OE1 GLU 223 D GLU 220 1_555 R MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc17 D OD2 ASP 247 D ASP 244 1_555 R MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? metalc ? metalc18 R MG MG . D MG 502 1_555 S O3 OXL . D OXL 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc19 R MG MG . D MG 502 1_555 S O2 OXL . D OXL 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc20 R MG MG . D MG 502 1_555 X O HOH . D HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.783 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5WSA _atom_sites.fract_transf_matrix[1][1] 0.007973 _atom_sites.fract_transf_matrix[1][2] 0.004603 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009207 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 G6P A 1 501 4 G6P G6P . F 3 MG A 1 502 2 MG MG . G 4 OXL A 1 503 1 OXL OXL . H 5 PO4 A 1 504 1 PO4 PO4 . I 2 G6P B 1 501 3 G6P G6P . J 3 MG B 1 502 3 MG MG . K 4 OXL B 1 503 2 OXL OXL . L 5 PO4 B 1 504 2 PO4 PO4 . M 2 G6P C 1 501 1 G6P G6P . N 3 MG C 1 502 1 MG MG . O 4 OXL C 1 503 4 OXL OXL . P 5 PO4 C 1 504 4 PO4 PO4 . Q 2 G6P D 1 501 2 G6P G6P . R 3 MG D 1 502 4 MG MG . S 4 OXL D 1 503 3 OXL OXL . T 5 PO4 D 1 504 3 PO4 PO4 . U 6 HOH A 1 601 159 HOH HOH . U 6 HOH A 2 602 99 HOH HOH . U 6 HOH A 3 603 43 HOH HOH . U 6 HOH A 4 604 15 HOH HOH . U 6 HOH A 5 605 124 HOH HOH . U 6 HOH A 6 606 4 HOH HOH . U 6 HOH A 7 607 36 HOH HOH . U 6 HOH A 8 608 12 HOH HOH . U 6 HOH A 9 609 13 HOH HOH . U 6 HOH A 10 610 68 HOH HOH . U 6 HOH A 11 611 106 HOH HOH . U 6 HOH A 12 612 114 HOH HOH . U 6 HOH A 13 613 120 HOH HOH . U 6 HOH A 14 614 49 HOH HOH . U 6 HOH A 15 615 63 HOH HOH . U 6 HOH A 16 616 105 HOH HOH . U 6 HOH A 17 617 156 HOH HOH . U 6 HOH A 18 618 51 HOH HOH . U 6 HOH A 19 619 18 HOH HOH . U 6 HOH A 20 620 116 HOH HOH . U 6 HOH A 21 621 46 HOH HOH . U 6 HOH A 22 622 29 HOH HOH . U 6 HOH A 23 623 59 HOH HOH . U 6 HOH A 24 624 48 HOH HOH . U 6 HOH A 25 625 54 HOH HOH . U 6 HOH A 26 626 154 HOH HOH . U 6 HOH A 27 627 113 HOH HOH . U 6 HOH A 28 628 158 HOH HOH . U 6 HOH A 29 629 27 HOH HOH . U 6 HOH A 30 630 118 HOH HOH . U 6 HOH A 31 631 53 HOH HOH . U 6 HOH A 32 632 75 HOH HOH . U 6 HOH A 33 633 67 HOH HOH . U 6 HOH A 34 634 74 HOH HOH . U 6 HOH A 35 635 76 HOH HOH . U 6 HOH A 36 636 150 HOH HOH . U 6 HOH A 37 637 157 HOH HOH . U 6 HOH A 38 638 117 HOH HOH . U 6 HOH A 39 639 153 HOH HOH . U 6 HOH A 40 640 122 HOH HOH . U 6 HOH A 41 641 169 HOH HOH . U 6 HOH A 42 642 152 HOH HOH . U 6 HOH A 43 643 147 HOH HOH . U 6 HOH A 44 644 119 HOH HOH . U 6 HOH A 45 645 121 HOH HOH . U 6 HOH A 46 646 148 HOH HOH . V 6 HOH B 1 601 100 HOH HOH . V 6 HOH B 2 602 91 HOH HOH . V 6 HOH B 3 603 10 HOH HOH . V 6 HOH B 4 604 45 HOH HOH . V 6 HOH B 5 605 16 HOH HOH . V 6 HOH B 6 606 31 HOH HOH . V 6 HOH B 7 607 50 HOH HOH . V 6 HOH B 8 608 2 HOH HOH . V 6 HOH B 9 609 7 HOH HOH . V 6 HOH B 10 610 108 HOH HOH . V 6 HOH B 11 611 71 HOH HOH . V 6 HOH B 12 612 69 HOH HOH . V 6 HOH B 13 613 78 HOH HOH . V 6 HOH B 14 614 3 HOH HOH . V 6 HOH B 15 615 70 HOH HOH . V 6 HOH B 16 616 107 HOH HOH . V 6 HOH B 17 617 149 HOH HOH . V 6 HOH B 18 618 144 HOH HOH . V 6 HOH B 19 619 143 HOH HOH . V 6 HOH B 20 620 161 HOH HOH . V 6 HOH B 21 621 38 HOH HOH . V 6 HOH B 22 622 115 HOH HOH . V 6 HOH B 23 623 72 HOH HOH . V 6 HOH B 24 624 73 HOH HOH . V 6 HOH B 25 625 41 HOH HOH . V 6 HOH B 26 626 21 HOH HOH . V 6 HOH B 27 627 37 HOH HOH . V 6 HOH B 28 628 155 HOH HOH . V 6 HOH B 29 629 81 HOH HOH . V 6 HOH B 30 630 170 HOH HOH . V 6 HOH B 31 631 171 HOH HOH . V 6 HOH B 32 632 172 HOH HOH . V 6 HOH B 33 633 125 HOH HOH . V 6 HOH B 34 634 77 HOH HOH . V 6 HOH B 35 635 163 HOH HOH . V 6 HOH B 36 636 82 HOH HOH . V 6 HOH B 37 637 79 HOH HOH . V 6 HOH B 38 638 83 HOH HOH . V 6 HOH B 39 639 85 HOH HOH . V 6 HOH B 40 640 127 HOH HOH . V 6 HOH B 41 641 126 HOH HOH . V 6 HOH B 42 642 80 HOH HOH . V 6 HOH B 43 643 162 HOH HOH . W 6 HOH C 1 601 96 HOH HOH . W 6 HOH C 2 602 102 HOH HOH . W 6 HOH C 3 603 30 HOH HOH . W 6 HOH C 4 604 112 HOH HOH . W 6 HOH C 5 605 103 HOH HOH . W 6 HOH C 6 606 138 HOH HOH . W 6 HOH C 7 607 89 HOH HOH . W 6 HOH C 8 608 23 HOH HOH . W 6 HOH C 9 609 134 HOH HOH . W 6 HOH C 10 610 129 HOH HOH . W 6 HOH C 11 611 42 HOH HOH . W 6 HOH C 12 612 20 HOH HOH . W 6 HOH C 13 613 104 HOH HOH . W 6 HOH C 14 614 57 HOH HOH . W 6 HOH C 15 615 35 HOH HOH . W 6 HOH C 16 616 136 HOH HOH . W 6 HOH C 17 617 131 HOH HOH . W 6 HOH C 18 618 39 HOH HOH . W 6 HOH C 19 619 128 HOH HOH . W 6 HOH C 20 620 92 HOH HOH . W 6 HOH C 21 621 22 HOH HOH . W 6 HOH C 22 622 90 HOH HOH . W 6 HOH C 23 623 164 HOH HOH . W 6 HOH C 24 624 6 HOH HOH . W 6 HOH C 25 625 11 HOH HOH . W 6 HOH C 26 626 40 HOH HOH . W 6 HOH C 27 627 133 HOH HOH . W 6 HOH C 28 628 94 HOH HOH . W 6 HOH C 29 629 111 HOH HOH . W 6 HOH C 30 630 44 HOH HOH . W 6 HOH C 31 631 25 HOH HOH . W 6 HOH C 32 632 5 HOH HOH . W 6 HOH C 33 633 93 HOH HOH . W 6 HOH C 34 634 24 HOH HOH . W 6 HOH C 35 635 28 HOH HOH . W 6 HOH C 36 636 130 HOH HOH . W 6 HOH C 37 637 65 HOH HOH . W 6 HOH C 38 638 146 HOH HOH . W 6 HOH C 39 639 56 HOH HOH . W 6 HOH C 40 640 32 HOH HOH . W 6 HOH C 41 641 137 HOH HOH . W 6 HOH C 42 642 132 HOH HOH . W 6 HOH C 43 643 165 HOH HOH . W 6 HOH C 44 644 52 HOH HOH . W 6 HOH C 45 645 87 HOH HOH . W 6 HOH C 46 646 58 HOH HOH . W 6 HOH C 47 647 135 HOH HOH . W 6 HOH C 48 648 145 HOH HOH . W 6 HOH C 49 649 160 HOH HOH . X 6 HOH D 1 601 9 HOH HOH . X 6 HOH D 2 602 88 HOH HOH . X 6 HOH D 3 603 101 HOH HOH . X 6 HOH D 4 604 14 HOH HOH . X 6 HOH D 5 605 26 HOH HOH . X 6 HOH D 6 606 151 HOH HOH . X 6 HOH D 7 607 141 HOH HOH . X 6 HOH D 8 608 17 HOH HOH . X 6 HOH D 9 609 110 HOH HOH . X 6 HOH D 10 610 95 HOH HOH . X 6 HOH D 11 611 123 HOH HOH . X 6 HOH D 12 612 139 HOH HOH . X 6 HOH D 13 613 34 HOH HOH . X 6 HOH D 14 614 109 HOH HOH . X 6 HOH D 15 615 55 HOH HOH . X 6 HOH D 16 616 8 HOH HOH . X 6 HOH D 17 617 98 HOH HOH . X 6 HOH D 18 618 1 HOH HOH . X 6 HOH D 19 619 19 HOH HOH . X 6 HOH D 20 620 86 HOH HOH . X 6 HOH D 21 621 167 HOH HOH . X 6 HOH D 22 622 33 HOH HOH . X 6 HOH D 23 623 140 HOH HOH . X 6 HOH D 24 624 168 HOH HOH . X 6 HOH D 25 625 142 HOH HOH . X 6 HOH D 26 626 47 HOH HOH . X 6 HOH D 27 627 66 HOH HOH . X 6 HOH D 28 628 61 HOH HOH . X 6 HOH D 29 629 62 HOH HOH . X 6 HOH D 30 630 64 HOH HOH . X 6 HOH D 31 631 84 HOH HOH . X 6 HOH D 32 632 97 HOH HOH . X 6 HOH D 33 633 60 HOH HOH . X 6 HOH D 34 634 166 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id N _atom_site.label_entity_id 3 _atom_site.Cartn_x 36.416 _atom_site.Cartn_y 20.683 _atom_site.Cartn_z 16.967 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.52 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 502 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #