data_5WWX
#
_model_server_result.job_id            OxVHxh2NbeYJNGwAVPijRA 
_model_server_result.datetime_utc      '2025-04-26 13:42:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5wwx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    5WWX 
#
_exptl.entry_id    5WWX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5WWX 
_cell.length_a            74.611 
_cell.length_b            74.611 
_cell.length_c            32.535 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5WWX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 4 A HIS 314 1_555 C NI NI . A NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
metalc ? metalc2 A NE2 HIS 4 A HIS 314 1_555 C NI NI . A NI 401 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
metalc ? metalc3 A NE2 HIS 6 A HIS 316 1_555 C NI NI . A NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc4 A NE2 HIS 6 A HIS 316 1_555 C NI NI . A NI 401 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5WWX 
_atom_sites.fract_transf_matrix[1][1]    0.013403 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013403 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.030736 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NI A 1 401 1 NI NI . 
D 4 HOH A 1 501 33 HOH HOH . 
D 4 HOH A 2 502 43 HOH HOH . 
D 4 HOH A 3 503 12 HOH HOH . 
D 4 HOH A 4 504 7 HOH HOH . 
D 4 HOH A 5 505 58 HOH HOH . 
D 4 HOH A 6 506 5 HOH HOH . 
D 4 HOH A 7 507 1 HOH HOH . 
D 4 HOH A 8 508 32 HOH HOH . 
D 4 HOH A 9 509 57 HOH HOH . 
D 4 HOH A 10 510 55 HOH HOH . 
D 4 HOH A 11 511 35 HOH HOH . 
D 4 HOH A 12 512 6 HOH HOH . 
D 4 HOH A 13 513 39 HOH HOH . 
D 4 HOH A 14 514 28 HOH HOH . 
D 4 HOH A 15 515 10 HOH HOH . 
D 4 HOH A 16 516 17 HOH HOH . 
D 4 HOH A 17 517 2 HOH HOH . 
D 4 HOH A 18 518 42 HOH HOH . 
D 4 HOH A 19 519 3 HOH HOH . 
D 4 HOH A 20 520 18 HOH HOH . 
D 4 HOH A 21 521 11 HOH HOH . 
D 4 HOH A 22 522 26 HOH HOH . 
D 4 HOH A 23 523 40 HOH HOH . 
D 4 HOH A 24 524 30 HOH HOH . 
D 4 HOH A 25 525 8 HOH HOH . 
D 4 HOH A 26 526 31 HOH HOH . 
D 4 HOH A 27 527 44 HOH HOH . 
D 4 HOH A 28 528 41 HOH HOH . 
D 4 HOH A 29 529 29 HOH HOH . 
D 4 HOH A 30 530 19 HOH HOH . 
D 4 HOH A 31 531 53 HOH HOH . 
D 4 HOH A 32 532 54 HOH HOH . 
D 4 HOH A 33 533 20 HOH HOH . 
D 4 HOH A 34 534 52 HOH HOH . 
D 4 HOH A 35 535 56 HOH HOH . 
D 4 HOH A 36 536 60 HOH HOH . 
D 4 HOH A 37 537 59 HOH HOH . 
D 4 HOH A 38 538 50 HOH HOH . 
D 4 HOH A 39 539 34 HOH HOH . 
D 4 HOH A 40 540 45 HOH HOH . 
D 4 HOH A 41 541 61 HOH HOH . 
D 4 HOH A 42 542 62 HOH HOH . 
D 4 HOH A 43 543 49 HOH HOH . 
D 4 HOH A 44 544 36 HOH HOH . 
D 4 HOH A 45 545 25 HOH HOH . 
D 4 HOH A 46 546 37 HOH HOH . 
D 4 HOH A 47 547 47 HOH HOH . 
D 4 HOH A 48 548 27 HOH HOH . 
D 4 HOH A 49 549 38 HOH HOH . 
E 4 HOH C 1 101 51 HOH HOH . 
E 4 HOH C 2 102 9 HOH HOH . 
E 4 HOH C 3 103 15 HOH HOH . 
E 4 HOH C 4 104 13 HOH HOH . 
E 4 HOH C 5 105 46 HOH HOH . 
E 4 HOH C 6 106 22 HOH HOH . 
E 4 HOH C 7 107 16 HOH HOH . 
E 4 HOH C 8 108 24 HOH HOH . 
E 4 HOH C 9 109 21 HOH HOH . 
E 4 HOH C 10 110 23 HOH HOH . 
E 4 HOH C 11 111 14 HOH HOH . 
E 4 HOH C 12 112 4 HOH HOH . 
E 4 HOH C 13 113 48 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               27.295 
_atom_site.Cartn_y               27.295 
_atom_site.Cartn_z               0 
_atom_site.occupancy             0.5 
_atom_site.B_iso_or_equiv        25.67 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           401 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#