data_5WXH # _model_server_result.job_id n8WHtpM4rcZ0PWchtlaXtw _model_server_result.datetime_utc '2025-02-05 11:39:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wxh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1002}' # _entry.id 5WXH # _exptl.entry_id 5WXH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 82.96 _cell.angle_beta 75.62 _cell.angle_gamma 73.49 _cell.entry_id 5WXH _cell.length_a 27.244 _cell.length_b 35.138 _cell.length_c 38.562 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WXH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,I,L 1 1 B,C,G,H,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 16 A CYS 870 1_555 F ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc2 A SG CYS 19 A CYS 873 1_555 F ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc3 A SG CYS 31 A CYS 885 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc4 A SG CYS 34 A CYS 888 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc5 A ND1 HIS 39 A HIS 893 1_555 F ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc6 A SG CYS 42 A CYS 896 1_555 F ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc7 A SG CYS 57 A CYS 911 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc8 A SG CYS 60 A CYS 914 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc9 B SG CYS 16 C CYS 870 1_555 H ZN ZN . C ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc10 B SG CYS 19 C CYS 873 1_555 H ZN ZN . C ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc11 B SG CYS 31 C CYS 885 1_555 G ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc12 B SG CYS 34 C CYS 888 1_555 G ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc13 B ND1 HIS 39 C HIS 893 1_555 H ZN ZN . C ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc14 B SG CYS 42 C CYS 896 1_555 H ZN ZN . C ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc15 B SG CYS 57 C CYS 911 1_555 G ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc16 B SG CYS 60 C CYS 914 1_555 G ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? covale ? covale1 C C THR 3 D THR 3 1_555 C N M3L 4 D M3L 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 C C M3L 4 D M3L 4 1_555 C N GLN 5 D GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 D C THR 3 P THR 3 1_555 D N M3L 4 P M3L 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 D C M3L 4 P M3L 4 1_555 D N GLN 5 P GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5WXH _atom_sites.fract_transf_matrix[1][1] 0.036705 _atom_sites.fract_transf_matrix[1][2] -0.010878 _atom_sites.fract_transf_matrix[1][3] -0.008813 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029683 _atom_sites.fract_transf_matrix[2][3] -0.001666 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026813 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 1001 1 ZN ZN . F 3 ZN A 1 1002 2 ZN ZN . G 3 ZN C 1 1001 3 ZN ZN . H 3 ZN C 1 1002 4 ZN ZN . I 4 HOH A 1 1101 110 HOH HOH . I 4 HOH A 2 1102 133 HOH HOH . I 4 HOH A 3 1103 178 HOH HOH . I 4 HOH A 4 1104 25 HOH HOH . I 4 HOH A 5 1105 20 HOH HOH . I 4 HOH A 6 1106 161 HOH HOH . I 4 HOH A 7 1107 42 HOH HOH . I 4 HOH A 8 1108 6 HOH HOH . I 4 HOH A 9 1109 139 HOH HOH . I 4 HOH A 10 1110 92 HOH HOH . I 4 HOH A 11 1111 36 HOH HOH . I 4 HOH A 12 1112 21 HOH HOH . I 4 HOH A 13 1113 45 HOH HOH . I 4 HOH A 14 1114 4 HOH HOH . I 4 HOH A 15 1115 108 HOH HOH . I 4 HOH A 16 1116 91 HOH HOH . I 4 HOH A 17 1117 17 HOH HOH . I 4 HOH A 18 1118 18 HOH HOH . I 4 HOH A 19 1119 70 HOH HOH . I 4 HOH A 20 1120 19 HOH HOH . I 4 HOH A 21 1121 24 HOH HOH . I 4 HOH A 22 1122 49 HOH HOH . I 4 HOH A 23 1123 48 HOH HOH . I 4 HOH A 24 1124 60 HOH HOH . I 4 HOH A 25 1125 61 HOH HOH . I 4 HOH A 26 1126 46 HOH HOH . I 4 HOH A 27 1127 132 HOH HOH . I 4 HOH A 28 1128 9 HOH HOH . I 4 HOH A 29 1129 152 HOH HOH . I 4 HOH A 30 1130 12 HOH HOH . I 4 HOH A 31 1131 26 HOH HOH . I 4 HOH A 32 1132 55 HOH HOH . I 4 HOH A 33 1133 38 HOH HOH . I 4 HOH A 34 1134 23 HOH HOH . I 4 HOH A 35 1135 86 HOH HOH . I 4 HOH A 36 1136 169 HOH HOH . I 4 HOH A 37 1137 88 HOH HOH . I 4 HOH A 38 1138 15 HOH HOH . I 4 HOH A 39 1139 44 HOH HOH . I 4 HOH A 40 1140 8 HOH HOH . I 4 HOH A 41 1141 83 HOH HOH . I 4 HOH A 42 1142 153 HOH HOH . I 4 HOH A 43 1143 7 HOH HOH . I 4 HOH A 44 1144 62 HOH HOH . I 4 HOH A 45 1145 128 HOH HOH . I 4 HOH A 46 1146 111 HOH HOH . I 4 HOH A 47 1147 119 HOH HOH . I 4 HOH A 48 1148 40 HOH HOH . I 4 HOH A 49 1149 31 HOH HOH . I 4 HOH A 50 1150 73 HOH HOH . I 4 HOH A 51 1151 168 HOH HOH . I 4 HOH A 52 1152 114 HOH HOH . I 4 HOH A 53 1153 170 HOH HOH . I 4 HOH A 54 1154 151 HOH HOH . I 4 HOH A 55 1155 102 HOH HOH . I 4 HOH A 56 1156 71 HOH HOH . I 4 HOH A 57 1157 66 HOH HOH . I 4 HOH A 58 1158 51 HOH HOH . I 4 HOH A 59 1159 156 HOH HOH . I 4 HOH A 60 1160 56 HOH HOH . I 4 HOH A 61 1161 159 HOH HOH . I 4 HOH A 62 1162 93 HOH HOH . I 4 HOH A 63 1163 180 HOH HOH . I 4 HOH A 64 1164 176 HOH HOH . I 4 HOH A 65 1165 101 HOH HOH . I 4 HOH A 66 1166 99 HOH HOH . I 4 HOH A 67 1167 125 HOH HOH . I 4 HOH A 68 1168 30 HOH HOH . I 4 HOH A 69 1169 96 HOH HOH . I 4 HOH A 70 1170 76 HOH HOH . I 4 HOH A 71 1171 136 HOH HOH . I 4 HOH A 72 1172 182 HOH HOH . I 4 HOH A 73 1173 147 HOH HOH . I 4 HOH A 74 1174 135 HOH HOH . I 4 HOH A 75 1175 68 HOH HOH . I 4 HOH A 76 1176 120 HOH HOH . I 4 HOH A 77 1177 82 HOH HOH . I 4 HOH A 78 1178 129 HOH HOH . I 4 HOH A 79 1179 57 HOH HOH . I 4 HOH A 80 1180 138 HOH HOH . I 4 HOH A 81 1181 124 HOH HOH . J 4 HOH C 1 1101 37 HOH HOH . J 4 HOH C 2 1102 65 HOH HOH . J 4 HOH C 3 1103 34 HOH HOH . J 4 HOH C 4 1104 117 HOH HOH . J 4 HOH C 5 1105 27 HOH HOH . J 4 HOH C 6 1106 67 HOH HOH . J 4 HOH C 7 1107 63 HOH HOH . J 4 HOH C 8 1108 122 HOH HOH . J 4 HOH C 9 1109 22 HOH HOH . J 4 HOH C 10 1110 29 HOH HOH . J 4 HOH C 11 1111 164 HOH HOH . J 4 HOH C 12 1112 1 HOH HOH . J 4 HOH C 13 1113 107 HOH HOH . J 4 HOH C 14 1114 167 HOH HOH . J 4 HOH C 15 1115 77 HOH HOH . J 4 HOH C 16 1116 58 HOH HOH . J 4 HOH C 17 1117 84 HOH HOH . J 4 HOH C 18 1118 32 HOH HOH . J 4 HOH C 19 1119 13 HOH HOH . J 4 HOH C 20 1120 28 HOH HOH . J 4 HOH C 21 1121 90 HOH HOH . J 4 HOH C 22 1122 74 HOH HOH . J 4 HOH C 23 1123 16 HOH HOH . J 4 HOH C 24 1124 10 HOH HOH . J 4 HOH C 25 1125 3 HOH HOH . J 4 HOH C 26 1126 50 HOH HOH . J 4 HOH C 27 1127 5 HOH HOH . J 4 HOH C 28 1128 127 HOH HOH . J 4 HOH C 29 1129 54 HOH HOH . J 4 HOH C 30 1130 142 HOH HOH . J 4 HOH C 31 1131 75 HOH HOH . J 4 HOH C 32 1132 98 HOH HOH . J 4 HOH C 33 1133 165 HOH HOH . J 4 HOH C 34 1134 103 HOH HOH . J 4 HOH C 35 1135 80 HOH HOH . J 4 HOH C 36 1136 33 HOH HOH . J 4 HOH C 37 1137 116 HOH HOH . J 4 HOH C 38 1138 131 HOH HOH . J 4 HOH C 39 1139 87 HOH HOH . J 4 HOH C 40 1140 2 HOH HOH . J 4 HOH C 41 1141 81 HOH HOH . J 4 HOH C 42 1142 115 HOH HOH . J 4 HOH C 43 1143 47 HOH HOH . J 4 HOH C 44 1144 166 HOH HOH . J 4 HOH C 45 1145 14 HOH HOH . J 4 HOH C 46 1146 85 HOH HOH . J 4 HOH C 47 1147 11 HOH HOH . J 4 HOH C 48 1148 141 HOH HOH . J 4 HOH C 49 1149 105 HOH HOH . J 4 HOH C 50 1150 158 HOH HOH . J 4 HOH C 51 1151 174 HOH HOH . J 4 HOH C 52 1152 43 HOH HOH . J 4 HOH C 53 1153 64 HOH HOH . J 4 HOH C 54 1154 175 HOH HOH . J 4 HOH C 55 1155 112 HOH HOH . J 4 HOH C 56 1156 35 HOH HOH . J 4 HOH C 57 1157 118 HOH HOH . J 4 HOH C 58 1158 69 HOH HOH . J 4 HOH C 59 1159 72 HOH HOH . J 4 HOH C 60 1160 157 HOH HOH . J 4 HOH C 61 1161 181 HOH HOH . J 4 HOH C 62 1162 137 HOH HOH . J 4 HOH C 63 1163 149 HOH HOH . J 4 HOH C 64 1164 177 HOH HOH . J 4 HOH C 65 1165 148 HOH HOH . J 4 HOH C 66 1166 143 HOH HOH . J 4 HOH C 67 1167 144 HOH HOH . J 4 HOH C 68 1168 145 HOH HOH . J 4 HOH C 69 1169 172 HOH HOH . J 4 HOH C 70 1170 150 HOH HOH . J 4 HOH C 71 1171 154 HOH HOH . J 4 HOH C 72 1172 140 HOH HOH . J 4 HOH C 73 1173 155 HOH HOH . J 4 HOH C 74 1174 79 HOH HOH . J 4 HOH C 75 1175 171 HOH HOH . J 4 HOH C 76 1176 162 HOH HOH . J 4 HOH C 77 1177 89 HOH HOH . J 4 HOH C 78 1178 100 HOH HOH . J 4 HOH C 79 1179 121 HOH HOH . J 4 HOH C 80 1180 134 HOH HOH . J 4 HOH C 81 1181 126 HOH HOH . J 4 HOH C 82 1182 173 HOH HOH . K 4 HOH D 1 101 123 HOH HOH . K 4 HOH D 2 102 97 HOH HOH . K 4 HOH D 3 103 52 HOH HOH . K 4 HOH D 4 104 109 HOH HOH . K 4 HOH D 5 105 146 HOH HOH . K 4 HOH D 6 106 78 HOH HOH . K 4 HOH D 7 107 130 HOH HOH . K 4 HOH D 8 108 113 HOH HOH . K 4 HOH D 9 109 39 HOH HOH . K 4 HOH D 10 110 183 HOH HOH . L 4 HOH P 1 101 106 HOH HOH . L 4 HOH P 2 102 179 HOH HOH . L 4 HOH P 3 103 163 HOH HOH . L 4 HOH P 4 104 41 HOH HOH . L 4 HOH P 5 105 94 HOH HOH . L 4 HOH P 6 106 59 HOH HOH . L 4 HOH P 7 107 53 HOH HOH . L 4 HOH P 8 108 160 HOH HOH . L 4 HOH P 9 109 95 HOH HOH . L 4 HOH P 10 110 104 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x 11.692 _atom_site.Cartn_y -8.558 _atom_site.Cartn_z 24.539 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.67 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #