data_5WXX # _model_server_result.job_id patVJ3V_cTeAd-o5dQiIFQ _model_server_result.datetime_utc '2024-11-26 05:44:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wxx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5WXX # _exptl.entry_id 5WXX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5WXX _cell.length_a 128.751 _cell.length_b 128.751 _cell.length_c 46.182 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WXX _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 22 A GLY 13 1_555 A N MSE 23 A MSE 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C MSE 23 A MSE 14 1_555 A N GLY 24 A GLY 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C GLU 169 A GLU 160 1_555 A N MSE 170 A MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale4 A C MSE 170 A MSE 161 1_555 A N ILE 171 A ILE 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 5WXX _atom_sites.fract_transf_matrix[1][1] 0.007767 _atom_sites.fract_transf_matrix[1][2] 0.004484 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008968 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021653 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 301 1 CIT CIT . C 3 HOH A 1 401 109 HOH HOH . C 3 HOH A 2 402 116 HOH HOH . C 3 HOH A 3 403 46 HOH HOH . C 3 HOH A 4 404 35 HOH HOH . C 3 HOH A 5 405 75 HOH HOH . C 3 HOH A 6 406 14 HOH HOH . C 3 HOH A 7 407 38 HOH HOH . C 3 HOH A 8 408 11 HOH HOH . C 3 HOH A 9 409 23 HOH HOH . C 3 HOH A 10 410 111 HOH HOH . C 3 HOH A 11 411 80 HOH HOH . C 3 HOH A 12 412 26 HOH HOH . C 3 HOH A 13 413 17 HOH HOH . C 3 HOH A 14 414 79 HOH HOH . C 3 HOH A 15 415 41 HOH HOH . C 3 HOH A 16 416 56 HOH HOH . C 3 HOH A 17 417 10 HOH HOH . C 3 HOH A 18 418 3 HOH HOH . C 3 HOH A 19 419 21 HOH HOH . C 3 HOH A 20 420 5 HOH HOH . C 3 HOH A 21 421 6 HOH HOH . C 3 HOH A 22 422 19 HOH HOH . C 3 HOH A 23 423 108 HOH HOH . C 3 HOH A 24 424 12 HOH HOH . C 3 HOH A 25 425 65 HOH HOH . C 3 HOH A 26 426 85 HOH HOH . C 3 HOH A 27 427 48 HOH HOH . C 3 HOH A 28 428 13 HOH HOH . C 3 HOH A 29 429 27 HOH HOH . C 3 HOH A 30 430 104 HOH HOH . C 3 HOH A 31 431 86 HOH HOH . C 3 HOH A 32 432 91 HOH HOH . C 3 HOH A 33 433 54 HOH HOH . C 3 HOH A 34 434 47 HOH HOH . C 3 HOH A 35 435 4 HOH HOH . C 3 HOH A 36 436 31 HOH HOH . C 3 HOH A 37 437 110 HOH HOH . C 3 HOH A 38 438 45 HOH HOH . C 3 HOH A 39 439 82 HOH HOH . C 3 HOH A 40 440 67 HOH HOH . C 3 HOH A 41 441 29 HOH HOH . C 3 HOH A 42 442 25 HOH HOH . C 3 HOH A 43 443 16 HOH HOH . C 3 HOH A 44 444 42 HOH HOH . C 3 HOH A 45 445 39 HOH HOH . C 3 HOH A 46 446 60 HOH HOH . C 3 HOH A 47 447 101 HOH HOH . C 3 HOH A 48 448 24 HOH HOH . C 3 HOH A 49 449 52 HOH HOH . C 3 HOH A 50 450 64 HOH HOH . C 3 HOH A 51 451 114 HOH HOH . C 3 HOH A 52 452 68 HOH HOH . C 3 HOH A 53 453 62 HOH HOH . C 3 HOH A 54 454 57 HOH HOH . C 3 HOH A 55 455 90 HOH HOH . C 3 HOH A 56 456 73 HOH HOH . C 3 HOH A 57 457 36 HOH HOH . C 3 HOH A 58 458 49 HOH HOH . C 3 HOH A 59 459 51 HOH HOH . C 3 HOH A 60 460 71 HOH HOH . C 3 HOH A 61 461 33 HOH HOH . C 3 HOH A 62 462 113 HOH HOH . C 3 HOH A 63 463 88 HOH HOH . C 3 HOH A 64 464 77 HOH HOH . C 3 HOH A 65 465 81 HOH HOH . C 3 HOH A 66 466 107 HOH HOH . C 3 HOH A 67 467 76 HOH HOH . C 3 HOH A 68 468 74 HOH HOH . C 3 HOH A 69 469 84 HOH HOH . C 3 HOH A 70 470 93 HOH HOH . C 3 HOH A 71 471 96 HOH HOH . C 3 HOH A 72 472 115 HOH HOH . C 3 HOH A 73 473 99 HOH HOH . C 3 HOH A 74 474 70 HOH HOH . C 3 HOH A 75 475 32 HOH HOH . C 3 HOH A 76 476 40 HOH HOH . C 3 HOH A 77 477 44 HOH HOH . C 3 HOH A 78 478 53 HOH HOH . C 3 HOH A 79 479 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . B 2 14.595 60.922 -10.223 1 52 ? C1 CIT 301 A 1 HETATM 2 O O1 CIT . . . B 2 14.755 60.217 -11.191 1 51.64 ? O1 CIT 301 A 1 HETATM 3 O O2 CIT . . . B 2 13.473 61.114 -9.823 1 52.33 ? O2 CIT 301 A 1 HETATM 4 C C2 CIT . . . B 2 15.774 61.553 -9.553 1 51.09 ? C2 CIT 301 A 1 HETATM 5 C C3 CIT . . . B 2 16.207 60.919 -8.244 1 50.27 ? C3 CIT 301 A 1 HETATM 6 O O7 CIT . . . B 2 17.397 61.589 -7.953 1 51.66 ? O7 CIT 301 A 1 HETATM 7 C C4 CIT . . . B 2 15.245 61.145 -7.082 1 49.31 ? C4 CIT 301 A 1 HETATM 8 C C5 CIT . . . B 2 15.623 60.601 -5.716 1 49.33 ? C5 CIT 301 A 1 HETATM 9 O O3 CIT . . . B 2 16.758 60.239 -5.441 1 48.86 ? O3 CIT 301 A 1 HETATM 10 O O4 CIT . . . B 2 14.753 60.533 -4.883 1 48.23 ? O4 CIT 301 A 1 HETATM 11 C C6 CIT . . . B 2 16.527 59.475 -8.378 1 50.18 ? C6 CIT 301 A 1 HETATM 12 O O5 CIT . . . B 2 15.638 58.668 -8.485 1 50.68 ? O5 CIT 301 A 1 HETATM 13 O O6 CIT . . . B 2 17.688 59.113 -8.323 1 50.34 ? O6 CIT 301 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #