data_5WXY # _model_server_result.job_id '_BHYDCrEidrfxo7cCaJzRg' _model_server_result.datetime_utc '2024-11-26 14:49:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wxy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5WXY # _exptl.entry_id 5WXY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 133.103 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ASPARTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5WXY _cell.length_a 128.482 _cell.length_b 128.482 _cell.length_c 45.143 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WXY _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 15.047667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H7 N O4' _chem_comp.formula_weight 133.103 _chem_comp.id ASP _chem_comp.mon_nstd_flag y _chem_comp.name 'ASPARTIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ASP sing 55 n n N H ASP sing 56 n n N H2 ASP sing 57 n n CA C ASP sing 58 n n CA CB ASP sing 59 n n CA HA ASP sing 60 n n C O ASP doub 61 n n C OXT ASP sing 62 n n CB CG ASP sing 63 n n CB HB2 ASP sing 64 n n CB HB3 ASP sing 65 n n CG OD1 ASP doub 66 n n CG OD2 ASP sing 67 n n OD2 HD2 ASP sing 68 n n OXT HXT ASP sing 69 n n # _atom_sites.entry_id 5WXY _atom_sites.fract_transf_matrix[1][1] 0.007783 _atom_sites.fract_transf_matrix[1][2] 0.004494 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022152 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ASP A 1 301 1 ASP ASP . C 3 HOH A 1 401 20 HOH HOH . C 3 HOH A 2 402 6 HOH HOH . C 3 HOH A 3 403 30 HOH HOH . C 3 HOH A 4 404 3 HOH HOH . C 3 HOH A 5 405 35 HOH HOH . C 3 HOH A 6 406 19 HOH HOH . C 3 HOH A 7 407 32 HOH HOH . C 3 HOH A 8 408 18 HOH HOH . C 3 HOH A 9 409 41 HOH HOH . C 3 HOH A 10 410 15 HOH HOH . C 3 HOH A 11 411 38 HOH HOH . C 3 HOH A 12 412 11 HOH HOH . C 3 HOH A 13 413 31 HOH HOH . C 3 HOH A 14 414 39 HOH HOH . C 3 HOH A 15 415 28 HOH HOH . C 3 HOH A 16 416 7 HOH HOH . C 3 HOH A 17 417 8 HOH HOH . C 3 HOH A 18 418 40 HOH HOH . C 3 HOH A 19 419 27 HOH HOH . C 3 HOH A 20 420 26 HOH HOH . C 3 HOH A 21 421 2 HOH HOH . C 3 HOH A 22 422 1 HOH HOH . C 3 HOH A 23 423 12 HOH HOH . C 3 HOH A 24 424 29 HOH HOH . C 3 HOH A 25 425 24 HOH HOH . C 3 HOH A 26 426 5 HOH HOH . C 3 HOH A 27 427 13 HOH HOH . C 3 HOH A 28 428 16 HOH HOH . C 3 HOH A 29 429 22 HOH HOH . C 3 HOH A 30 430 33 HOH HOH . C 3 HOH A 31 431 37 HOH HOH . C 3 HOH A 32 432 17 HOH HOH . C 3 HOH A 33 433 14 HOH HOH . C 3 HOH A 34 434 4 HOH HOH . C 3 HOH A 35 435 36 HOH HOH . C 3 HOH A 36 436 23 HOH HOH . C 3 HOH A 37 437 10 HOH HOH . C 3 HOH A 38 438 25 HOH HOH . C 3 HOH A 39 439 34 HOH HOH . C 3 HOH A 40 440 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ASP . . . B 2 -60.207 14.142 13.35 1 49.42 ? N ASP 301 A 1 HETATM 2 C CA ASP . . . B 2 -60.36 15.568 13.829 1 50.44 ? CA ASP 301 A 1 HETATM 3 C C ASP . . . B 2 -59.737 16.581 12.857 1 46.9 ? C ASP 301 A 1 HETATM 4 O O ASP . . . B 2 -59.359 16.264 11.735 1 39.33 ? O ASP 301 A 1 HETATM 5 C CB ASP . . . B 2 -59.828 15.743 15.265 1 49.82 ? CB ASP 301 A 1 HETATM 6 C CG ASP . . . B 2 -58.619 14.882 15.549 1 48.59 ? CG ASP 301 A 1 HETATM 7 O OD1 ASP . . . B 2 -57.575 15.087 14.903 1 45.52 ? OD1 ASP 301 A 1 HETATM 8 O OD2 ASP . . . B 2 -58.73 13.988 16.41 1 45.11 ? OD2 ASP 301 A 1 HETATM 9 O OXT ASP . . . B 2 -59.652 17.768 13.142 1 52.42 ? OXT ASP 301 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #