data_5WXZ # _model_server_result.job_id SOBi9BHQbk1CPkycgHErTQ _model_server_result.datetime_utc '2024-11-26 12:38:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wxz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5WXZ # _exptl.entry_id 5WXZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 133.103 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'D-ASPARTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5WXZ _cell.length_a 129.097 _cell.length_b 129.097 _cell.length_c 44.641 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WXZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -14.880333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H7 N O4' _chem_comp.formula_weight 133.103 _chem_comp.id DAS _chem_comp.mon_nstd_flag . _chem_comp.name 'D-ASPARTIC ACID' _chem_comp.type 'd-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA DAS sing 83 n n N H DAS sing 84 n n N H2 DAS sing 85 n n CA C DAS sing 86 n n CA CB DAS sing 87 n n CA HA DAS sing 88 n n C O DAS doub 89 n n C OXT DAS sing 90 n n CB CG DAS sing 91 n n CB HB2 DAS sing 92 n n CB HB3 DAS sing 93 n n CG OD1 DAS doub 94 n n CG OD2 DAS sing 95 n n OD2 HD2 DAS sing 96 n n OXT HXT DAS sing 97 n n # _atom_sites.entry_id 5WXZ _atom_sites.fract_transf_matrix[1][1] 0.007746 _atom_sites.fract_transf_matrix[1][2] 0.004472 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008944 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DAS A 1 301 1 DAS DAS . C 3 HOH A 1 401 18 HOH HOH . C 3 HOH A 2 402 23 HOH HOH . C 3 HOH A 3 403 14 HOH HOH . C 3 HOH A 4 404 7 HOH HOH . C 3 HOH A 5 405 30 HOH HOH . C 3 HOH A 6 406 29 HOH HOH . C 3 HOH A 7 407 4 HOH HOH . C 3 HOH A 8 408 10 HOH HOH . C 3 HOH A 9 409 21 HOH HOH . C 3 HOH A 10 410 22 HOH HOH . C 3 HOH A 11 411 16 HOH HOH . C 3 HOH A 12 412 2 HOH HOH . C 3 HOH A 13 413 9 HOH HOH . C 3 HOH A 14 414 20 HOH HOH . C 3 HOH A 15 415 13 HOH HOH . C 3 HOH A 16 416 5 HOH HOH . C 3 HOH A 17 417 25 HOH HOH . C 3 HOH A 18 418 6 HOH HOH . C 3 HOH A 19 419 8 HOH HOH . C 3 HOH A 20 420 3 HOH HOH . C 3 HOH A 21 421 15 HOH HOH . C 3 HOH A 22 422 17 HOH HOH . C 3 HOH A 23 423 19 HOH HOH . C 3 HOH A 24 424 28 HOH HOH . C 3 HOH A 25 425 26 HOH HOH . C 3 HOH A 26 426 12 HOH HOH . C 3 HOH A 27 427 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N DAS . . . B 2 42.963 -45.469 -13.62 1 74.48 ? N DAS 301 A 1 HETATM 2 C CA DAS . . . B 2 43.155 -43.99 -13.504 1 74.71 ? CA DAS 301 A 1 HETATM 3 C C DAS . . . B 2 44.292 -43.657 -12.607 1 71.52 ? C DAS 301 A 1 HETATM 4 O O DAS . . . B 2 45.406 -43.432 -13.065 1 75.14 ? O DAS 301 A 1 HETATM 5 C CB DAS . . . B 2 43.437 -43.307 -14.835 1 74.55 ? CB DAS 301 A 1 HETATM 6 C CG DAS . . . B 2 42.262 -43.591 -15.698 1 75.54 ? CG DAS 301 A 1 HETATM 7 O OD1 DAS . . . B 2 42.223 -44.68 -16.298 1 71.69 ? OD1 DAS 301 A 1 HETATM 8 O OD2 DAS . . . B 2 41.382 -42.723 -15.735 1 77.16 ? OD2 DAS 301 A 1 HETATM 9 O OXT DAS . . . B 2 44.127 -43.604 -11.395 1 68.09 ? OXT DAS 301 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #