data_5WY0 # _model_server_result.job_id KTSAb2AOe61DD54aGtYubg _model_server_result.datetime_utc '2025-02-26 21:27:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wy0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":800}' # _entry.id 5WY0 # _exptl.entry_id 5WY0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5WY0 _cell.length_a 38.521 _cell.length_b 38.521 _cell.length_c 249.437 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WY0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 277 n n N HN1 SAM sing 278 n n N HN2 SAM sing 279 n n CA C SAM sing 280 n n CA CB SAM sing 281 n n CA HA SAM sing 282 n n C O SAM doub 283 n n C OXT SAM sing 284 n n CB CG SAM sing 285 n n CB HB1 SAM sing 286 n n CB HB2 SAM sing 287 n n CG SD SAM sing 288 n n CG HG1 SAM sing 289 n n CG HG2 SAM sing 290 n n SD CE SAM sing 291 n n SD C5' SAM sing 292 n n CE HE1 SAM sing 293 n n CE HE2 SAM sing 294 n n CE HE3 SAM sing 295 n n C5' C4' SAM sing 296 n n C5' "H5'1" SAM sing 297 n n C5' "H5'2" SAM sing 298 n n C4' O4' SAM sing 299 n n C4' C3' SAM sing 300 n n C4' H4' SAM sing 301 n n O4' C1' SAM sing 302 n n C3' O3' SAM sing 303 n n C3' C2' SAM sing 304 n n C3' H3' SAM sing 305 n n O3' HO3' SAM sing 306 n n C2' O2' SAM sing 307 n n C2' C1' SAM sing 308 n n C2' H2' SAM sing 309 n n O2' HO2' SAM sing 310 n n C1' N9 SAM sing 311 n n C1' H1' SAM sing 312 n n N9 C8 SAM sing 313 n y N9 C4 SAM sing 314 n y C8 N7 SAM doub 315 n y C8 H8 SAM sing 316 n n N7 C5 SAM sing 317 n y C5 C6 SAM sing 318 n y C5 C4 SAM doub 319 n y C6 N6 SAM sing 320 n n C6 N1 SAM doub 321 n y N6 HN61 SAM sing 322 n n N6 HN62 SAM sing 323 n n N1 C2 SAM sing 324 n y C2 N3 SAM doub 325 n y C2 H2 SAM sing 326 n n N3 C4 SAM sing 327 n y # _atom_sites.entry_id 5WY0 _atom_sites.fract_transf_matrix[1][1] 0.02596 _atom_sites.fract_transf_matrix[1][2] 0.014988 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029976 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004009 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM A 1 800 800 SAM SAM . C 3 HOH A 1 901 96 HOH HOH . C 3 HOH A 2 902 85 HOH HOH . C 3 HOH A 3 903 93 HOH HOH . C 3 HOH A 4 904 105 HOH HOH . C 3 HOH A 5 905 94 HOH HOH . C 3 HOH A 6 906 106 HOH HOH . C 3 HOH A 7 907 46 HOH HOH . C 3 HOH A 8 908 72 HOH HOH . C 3 HOH A 9 909 51 HOH HOH . C 3 HOH A 10 910 9 HOH HOH . C 3 HOH A 11 911 53 HOH HOH . C 3 HOH A 12 912 7 HOH HOH . C 3 HOH A 13 913 25 HOH HOH . C 3 HOH A 14 914 78 HOH HOH . C 3 HOH A 15 915 39 HOH HOH . C 3 HOH A 16 916 47 HOH HOH . C 3 HOH A 17 917 33 HOH HOH . C 3 HOH A 18 918 22 HOH HOH . C 3 HOH A 19 919 84 HOH HOH . C 3 HOH A 20 920 21 HOH HOH . C 3 HOH A 21 921 45 HOH HOH . C 3 HOH A 22 922 48 HOH HOH . C 3 HOH A 23 923 18 HOH HOH . C 3 HOH A 24 924 58 HOH HOH . C 3 HOH A 25 925 40 HOH HOH . C 3 HOH A 26 926 12 HOH HOH . C 3 HOH A 27 927 61 HOH HOH . C 3 HOH A 28 928 57 HOH HOH . C 3 HOH A 29 929 2 HOH HOH . C 3 HOH A 30 930 98 HOH HOH . C 3 HOH A 31 931 54 HOH HOH . C 3 HOH A 32 932 20 HOH HOH . C 3 HOH A 33 933 11 HOH HOH . C 3 HOH A 34 934 52 HOH HOH . C 3 HOH A 35 935 5 HOH HOH . C 3 HOH A 36 936 8 HOH HOH . C 3 HOH A 37 937 79 HOH HOH . C 3 HOH A 38 938 59 HOH HOH . C 3 HOH A 39 939 38 HOH HOH . C 3 HOH A 40 940 30 HOH HOH . C 3 HOH A 41 941 50 HOH HOH . C 3 HOH A 42 942 56 HOH HOH . C 3 HOH A 43 943 63 HOH HOH . C 3 HOH A 44 944 67 HOH HOH . C 3 HOH A 45 945 29 HOH HOH . C 3 HOH A 46 946 44 HOH HOH . C 3 HOH A 47 947 82 HOH HOH . C 3 HOH A 48 948 110 HOH HOH . C 3 HOH A 49 949 43 HOH HOH . C 3 HOH A 50 950 16 HOH HOH . C 3 HOH A 51 951 42 HOH HOH . C 3 HOH A 52 952 3 HOH HOH . C 3 HOH A 53 953 26 HOH HOH . C 3 HOH A 54 954 4 HOH HOH . C 3 HOH A 55 955 10 HOH HOH . C 3 HOH A 56 956 28 HOH HOH . C 3 HOH A 57 957 14 HOH HOH . C 3 HOH A 58 958 17 HOH HOH . C 3 HOH A 59 959 64 HOH HOH . C 3 HOH A 60 960 36 HOH HOH . C 3 HOH A 61 961 71 HOH HOH . C 3 HOH A 62 962 91 HOH HOH . C 3 HOH A 63 963 15 HOH HOH . C 3 HOH A 64 964 65 HOH HOH . C 3 HOH A 65 965 77 HOH HOH . C 3 HOH A 66 966 34 HOH HOH . C 3 HOH A 67 967 88 HOH HOH . C 3 HOH A 68 968 23 HOH HOH . C 3 HOH A 69 969 49 HOH HOH . C 3 HOH A 70 970 86 HOH HOH . C 3 HOH A 71 971 80 HOH HOH . C 3 HOH A 72 972 89 HOH HOH . C 3 HOH A 73 973 35 HOH HOH . C 3 HOH A 74 974 19 HOH HOH . C 3 HOH A 75 975 100 HOH HOH . C 3 HOH A 76 976 97 HOH HOH . C 3 HOH A 77 977 24 HOH HOH . C 3 HOH A 78 978 31 HOH HOH . C 3 HOH A 79 979 109 HOH HOH . C 3 HOH A 80 980 76 HOH HOH . C 3 HOH A 81 981 68 HOH HOH . C 3 HOH A 82 982 37 HOH HOH . C 3 HOH A 83 983 74 HOH HOH . C 3 HOH A 84 984 60 HOH HOH . C 3 HOH A 85 985 114 HOH HOH . C 3 HOH A 86 986 41 HOH HOH . C 3 HOH A 87 987 83 HOH HOH . C 3 HOH A 88 988 1 HOH HOH . C 3 HOH A 89 989 87 HOH HOH . C 3 HOH A 90 990 62 HOH HOH . C 3 HOH A 91 991 6 HOH HOH . C 3 HOH A 92 992 90 HOH HOH . C 3 HOH A 93 993 115 HOH HOH . C 3 HOH A 94 994 27 HOH HOH . C 3 HOH A 95 995 95 HOH HOH . C 3 HOH A 96 996 66 HOH HOH . C 3 HOH A 97 997 92 HOH HOH . C 3 HOH A 98 998 101 HOH HOH . C 3 HOH A 99 999 108 HOH HOH . C 3 HOH A 100 1000 103 HOH HOH . C 3 HOH A 101 1001 69 HOH HOH . C 3 HOH A 102 1002 55 HOH HOH . C 3 HOH A 103 1003 81 HOH HOH . C 3 HOH A 104 1004 111 HOH HOH . C 3 HOH A 105 1005 99 HOH HOH . C 3 HOH A 106 1006 104 HOH HOH . C 3 HOH A 107 1007 113 HOH HOH . C 3 HOH A 108 1008 73 HOH HOH . C 3 HOH A 109 1009 70 HOH HOH . C 3 HOH A 110 1010 102 HOH HOH . C 3 HOH A 111 1011 13 HOH HOH . C 3 HOH A 112 1012 107 HOH HOH . C 3 HOH A 113 1013 112 HOH HOH . C 3 HOH A 114 1014 75 HOH HOH . C 3 HOH A 115 1015 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . B 2 14.531 4.439 -20.307 1 26.5 ? N SAM 800 A 1 HETATM 2 C CA SAM . . . B 2 15.765 5.01 -20.838 1 32.2 ? CA SAM 800 A 1 HETATM 3 C C SAM . . . B 2 16.99 4.334 -20.238 1 39.44 ? C SAM 800 A 1 HETATM 4 O O SAM . . . B 2 18.088 4.44 -20.785 1 44.38 ? O SAM 800 A 1 HETATM 5 O OXT SAM . . . B 2 16.913 3.674 -19.197 1 35.11 ? OXT SAM 800 A 1 HETATM 6 C CB SAM . . . B 2 15.835 6.514 -20.607 1 31.32 ? CB SAM 800 A 1 HETATM 7 C CG SAM . . . B 2 15.606 6.958 -19.165 1 24.73 ? CG SAM 800 A 1 HETATM 8 S SD SAM . . . B 2 15.744 8.761 -19.022 1 35.11 ? SD SAM 800 A 1 HETATM 9 C CE SAM . . . B 2 16.267 8.903 -17.291 1 36.21 ? CE SAM 800 A 1 HETATM 10 C C5' SAM . . . B 2 13.996 9.229 -18.895 1 28.75 ? C5' SAM 800 A 1 HETATM 11 C C4' SAM . . . B 2 13.295 9.239 -20.255 1 28.46 ? C4' SAM 800 A 1 HETATM 12 O O4' SAM . . . B 2 11.903 9.397 -20.079 1 25.91 ? O4' SAM 800 A 1 HETATM 13 C C3' SAM . . . B 2 13.757 10.369 -21.167 1 28.66 ? C3' SAM 800 A 1 HETATM 14 O O3' SAM . . . B 2 14.019 9.862 -22.466 1 29.33 ? O3' SAM 800 A 1 HETATM 15 C C2' SAM . . . B 2 12.56 11.287 -21.234 1 29.62 ? C2' SAM 800 A 1 HETATM 16 O O2' SAM . . . B 2 12.507 11.964 -22.461 1 29.2 ? O2' SAM 800 A 1 HETATM 17 C C1' SAM . . . B 2 11.416 10.31 -21.041 1 27.79 ? C1' SAM 800 A 1 HETATM 18 N N9 SAM . . . B 2 10.177 10.898 -20.512 1 27.47 ? N9 SAM 800 A 1 HETATM 19 C C8 SAM . . . B 2 10.042 11.806 -19.494 1 26.76 ? C8 SAM 800 A 1 HETATM 20 N N7 SAM . . . B 2 8.719 12.054 -19.32 1 24.23 ? N7 SAM 800 A 1 HETATM 21 C C5 SAM . . . B 2 8.017 11.306 -20.2 1 23.55 ? C5 SAM 800 A 1 HETATM 22 C C6 SAM . . . B 2 6.662 11.169 -20.46 1 25.82 ? C6 SAM 800 A 1 HETATM 23 N N6 SAM . . . B 2 5.764 11.855 -19.769 1 22.79 ? N6 SAM 800 A 1 HETATM 24 N N1 SAM . . . B 2 6.239 10.308 -21.452 1 26.23 ? N1 SAM 800 A 1 HETATM 25 C C2 SAM . . . B 2 7.16 9.593 -22.183 1 23.54 ? C2 SAM 800 A 1 HETATM 26 N N3 SAM . . . B 2 8.504 9.739 -21.928 1 24.45 ? N3 SAM 800 A 1 HETATM 27 C C4 SAM . . . B 2 8.924 10.573 -20.948 1 25.2 ? C4 SAM 800 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #