data_5WY1 # _model_server_result.job_id 7b5b79d_bHHUxGQYzS7d6A _model_server_result.datetime_utc '2025-04-01 11:42:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wy1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2003}' # _entry.id 5WY1 # _exptl.entry_id 5WY1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WY1 _cell.length_a 134.998 _cell.length_b 97.804 _cell.length_c 130.319 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WY1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 134.998 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 69 A CYS 359 1_555 B ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc2 A SG CYS 72 A CYS 362 1_555 B ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc3 A SG CYS 130 A CYS 420 1_555 B ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc4 A ND1 HIS 134 A HIS 424 1_555 B ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc5 A SG CYS 366 A CYS 656 1_555 C ZN ZN . A ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc6 A SG CYS 369 A CYS 659 1_555 C ZN ZN . A ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc7 A SG CYS 372 A CYS 662 1_555 C ZN ZN . A ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc8 A SG CYS 404 A CYS 694 1_555 C ZN ZN . A ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc9 A NE2 HIS 506 A HIS 796 1_555 D ZN ZN . A ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc10 A SG CYS 533 A CYS 823 1_555 D ZN ZN . A ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc11 A SG CYS 607 A CYS 897 1_555 D ZN ZN . A ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc12 A SG CYS 610 A CYS 900 1_555 D ZN ZN . A ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc13 A SG CYS 1189 A CYS 1479 1_555 E ZN ZN . A ZN 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc14 A SG CYS 1191 A CYS 1481 1_555 E ZN ZN . A ZN 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc15 A SG CYS 1197 A CYS 1487 1_555 E ZN ZN . A ZN 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc16 A NE2 HIS 1214 A HIS 1504 1_555 E ZN ZN . A ZN 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5WY1 _atom_sites.fract_transf_matrix[1][1] 0.007408 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010225 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007673 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 2001 2001 ZN ZN . C 2 ZN A 1 2002 2002 ZN ZN . D 2 ZN A 1 2003 2004 ZN ZN . E 2 ZN A 1 2004 2005 ZN ZN . F 3 HOH A 1 2101 26 HOH HOH . F 3 HOH A 2 2102 36 HOH HOH . F 3 HOH A 3 2103 31 HOH HOH . F 3 HOH A 4 2104 53 HOH HOH . F 3 HOH A 5 2105 50 HOH HOH . F 3 HOH A 6 2106 21 HOH HOH . F 3 HOH A 7 2107 40 HOH HOH . F 3 HOH A 8 2108 41 HOH HOH . F 3 HOH A 9 2109 45 HOH HOH . F 3 HOH A 10 2110 43 HOH HOH . F 3 HOH A 11 2111 60 HOH HOH . F 3 HOH A 12 2112 34 HOH HOH . F 3 HOH A 13 2113 51 HOH HOH . F 3 HOH A 14 2114 44 HOH HOH . F 3 HOH A 15 2115 27 HOH HOH . F 3 HOH A 16 2116 6 HOH HOH . F 3 HOH A 17 2117 33 HOH HOH . F 3 HOH A 18 2118 61 HOH HOH . F 3 HOH A 19 2119 20 HOH HOH . F 3 HOH A 20 2120 38 HOH HOH . F 3 HOH A 21 2121 5 HOH HOH . F 3 HOH A 22 2122 54 HOH HOH . F 3 HOH A 23 2123 39 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 97.009 _atom_site.Cartn_y 42.515 _atom_site.Cartn_z 64.85 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 82.12 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 2003 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #