data_5WYD
#
_model_server_result.job_id            7FplMUNW-9OSEVrplLneFQ 
_model_server_result.datetime_utc      '2024-11-25 10:53:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5wyd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":301}' 
#
_entry.id    5WYD 
#
_exptl.entry_id    5WYD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              60.095 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ISOPROPYL ALCOHOL' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5WYD 
_cell.length_a            83.309 
_cell.length_b            83.309 
_cell.length_c            207.547 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5WYD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,G,H,I,J,K,L,S,T,U,V 1 1 
F,O,P,Q,R,X 1 2 
E,M,N,W 1 3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_665 x+1,y+1,z 1 0 0 0 1 0 0 0 1 41.6545 72.14771 0 
3 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 83.309 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 M N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
#
_chem_comp.formula           'C3 H8 O' 
_chem_comp.formula_weight    60.095 
_chem_comp.id                IPA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ISOPROPYL ALCOHOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     2-PROPANOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 IPA sing 173 n n 
C1 H11 IPA sing 174 n n 
C1 H12 IPA sing 175 n n 
C1 H13 IPA sing 176 n n 
C2 C3 IPA sing 177 n n 
C2 O2 IPA sing 178 n n 
C2 H2 IPA sing 179 n n 
C3 H31 IPA sing 180 n n 
C3 H32 IPA sing 181 n n 
C3 H33 IPA sing 182 n n 
O2 HO2 IPA sing 183 n n 
#
_atom_sites.entry_id                     5WYD 
_atom_sites.fract_transf_matrix[1][1]    0.012004 
_atom_sites.fract_transf_matrix[1][2]    0.00693 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01386 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004818 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 PTD A 1 301 1 PTD LIG . 
H 3 IPA B 1 301 4 IPA IPA . 
I 3 IPA C 1 301 1 IPA IPA . 
J 3 IPA C 1 302 2 IPA IPA . 
K 4 MPD C 1 303 1 MPD MPD . 
L 2 PTD D 1 301 3 PTD LIG . 
M 3 IPA E 1 301 3 IPA IPA . 
N 2 PTD E 1 302 2 PTD LIG . 
O 3 IPA F 1 301 5 IPA IPA . 
P 3 IPA F 1 302 6 IPA IPA . 
Q 3 IPA F 1 303 7 IPA IPA . 
R 5 MRD F 1 304 2 MRD MPD . 
S 6 HOH A 1 401 11 HOH HOH . 
S 6 HOH A 2 402 97 HOH HOH . 
S 6 HOH A 3 403 138 HOH HOH . 
S 6 HOH A 4 404 131 HOH HOH . 
S 6 HOH A 5 405 51 HOH HOH . 
S 6 HOH A 6 406 130 HOH HOH . 
S 6 HOH A 7 407 27 HOH HOH . 
S 6 HOH A 8 408 35 HOH HOH . 
S 6 HOH A 9 409 55 HOH HOH . 
S 6 HOH A 10 410 104 HOH HOH . 
S 6 HOH A 11 411 56 HOH HOH . 
S 6 HOH A 12 412 141 HOH HOH . 
S 6 HOH A 13 413 21 HOH HOH . 
S 6 HOH A 14 414 37 HOH HOH . 
S 6 HOH A 15 415 114 HOH HOH . 
S 6 HOH A 16 416 17 HOH HOH . 
S 6 HOH A 17 417 135 HOH HOH . 
S 6 HOH A 18 418 31 HOH HOH . 
S 6 HOH A 19 419 2 HOH HOH . 
S 6 HOH A 20 420 64 HOH HOH . 
S 6 HOH A 21 421 41 HOH HOH . 
S 6 HOH A 22 422 103 HOH HOH . 
S 6 HOH A 23 423 129 HOH HOH . 
S 6 HOH A 24 424 140 HOH HOH . 
S 6 HOH A 25 425 157 HOH HOH . 
S 6 HOH A 26 426 48 HOH HOH . 
S 6 HOH A 27 427 148 HOH HOH . 
S 6 HOH A 28 428 113 HOH HOH . 
S 6 HOH A 29 429 170 HOH HOH . 
S 6 HOH A 30 430 199 HOH HOH . 
T 6 HOH B 1 401 33 HOH HOH . 
T 6 HOH B 2 402 91 HOH HOH . 
T 6 HOH B 3 403 167 HOH HOH . 
T 6 HOH B 4 404 14 HOH HOH . 
T 6 HOH B 5 405 111 HOH HOH . 
T 6 HOH B 6 406 71 HOH HOH . 
T 6 HOH B 7 407 30 HOH HOH . 
T 6 HOH B 8 408 54 HOH HOH . 
T 6 HOH B 9 409 8 HOH HOH . 
T 6 HOH B 10 410 26 HOH HOH . 
T 6 HOH B 11 411 136 HOH HOH . 
T 6 HOH B 12 412 145 HOH HOH . 
T 6 HOH B 13 413 85 HOH HOH . 
T 6 HOH B 14 414 29 HOH HOH . 
T 6 HOH B 15 415 46 HOH HOH . 
T 6 HOH B 16 416 137 HOH HOH . 
T 6 HOH B 17 417 160 HOH HOH . 
T 6 HOH B 18 418 123 HOH HOH . 
T 6 HOH B 19 419 156 HOH HOH . 
T 6 HOH B 20 420 166 HOH HOH . 
T 6 HOH B 21 421 165 HOH HOH . 
T 6 HOH B 22 422 92 HOH HOH . 
T 6 HOH B 23 423 109 HOH HOH . 
T 6 HOH B 24 424 112 HOH HOH . 
T 6 HOH B 25 425 70 HOH HOH . 
T 6 HOH B 26 426 65 HOH HOH . 
T 6 HOH B 27 427 78 HOH HOH . 
T 6 HOH B 28 428 168 HOH HOH . 
T 6 HOH B 29 429 185 HOH HOH . 
T 6 HOH B 30 430 164 HOH HOH . 
T 6 HOH B 31 431 186 HOH HOH . 
T 6 HOH B 32 432 187 HOH HOH . 
U 6 HOH C 1 401 44 HOH HOH . 
U 6 HOH C 2 402 105 HOH HOH . 
U 6 HOH C 3 403 142 HOH HOH . 
U 6 HOH C 4 404 20 HOH HOH . 
U 6 HOH C 5 405 150 HOH HOH . 
U 6 HOH C 6 406 67 HOH HOH . 
U 6 HOH C 7 407 101 HOH HOH . 
U 6 HOH C 8 408 28 HOH HOH . 
U 6 HOH C 9 409 139 HOH HOH . 
U 6 HOH C 10 410 38 HOH HOH . 
U 6 HOH C 11 411 32 HOH HOH . 
U 6 HOH C 12 412 12 HOH HOH . 
U 6 HOH C 13 413 171 HOH HOH . 
U 6 HOH C 14 414 102 HOH HOH . 
U 6 HOH C 15 415 61 HOH HOH . 
U 6 HOH C 16 416 106 HOH HOH . 
U 6 HOH C 17 417 80 HOH HOH . 
U 6 HOH C 18 418 43 HOH HOH . 
U 6 HOH C 19 419 95 HOH HOH . 
U 6 HOH C 20 420 100 HOH HOH . 
U 6 HOH C 21 421 45 HOH HOH . 
U 6 HOH C 22 422 174 HOH HOH . 
U 6 HOH C 23 423 66 HOH HOH . 
U 6 HOH C 24 424 189 HOH HOH . 
U 6 HOH C 25 425 122 HOH HOH . 
U 6 HOH C 26 426 188 HOH HOH . 
U 6 HOH C 27 427 58 HOH HOH . 
U 6 HOH C 28 428 203 HOH HOH . 
U 6 HOH C 29 429 155 HOH HOH . 
U 6 HOH C 30 430 180 HOH HOH . 
U 6 HOH C 31 431 159 HOH HOH . 
U 6 HOH C 32 432 198 HOH HOH . 
U 6 HOH C 33 433 208 HOH HOH . 
U 6 HOH C 34 434 163 HOH HOH . 
U 6 HOH C 35 435 207 HOH HOH . 
U 6 HOH C 36 436 201 HOH HOH . 
V 6 HOH D 1 401 158 HOH HOH . 
V 6 HOH D 2 402 125 HOH HOH . 
V 6 HOH D 3 403 19 HOH HOH . 
V 6 HOH D 4 404 5 HOH HOH . 
V 6 HOH D 5 405 4 HOH HOH . 
V 6 HOH D 6 406 69 HOH HOH . 
V 6 HOH D 7 407 40 HOH HOH . 
V 6 HOH D 8 408 34 HOH HOH . 
V 6 HOH D 9 409 108 HOH HOH . 
V 6 HOH D 10 410 68 HOH HOH . 
V 6 HOH D 11 411 18 HOH HOH . 
V 6 HOH D 12 412 182 HOH HOH . 
V 6 HOH D 13 413 16 HOH HOH . 
V 6 HOH D 14 414 88 HOH HOH . 
V 6 HOH D 15 415 13 HOH HOH . 
V 6 HOH D 16 416 119 HOH HOH . 
V 6 HOH D 17 417 195 HOH HOH . 
V 6 HOH D 18 418 47 HOH HOH . 
V 6 HOH D 19 419 124 HOH HOH . 
V 6 HOH D 20 420 84 HOH HOH . 
V 6 HOH D 21 421 90 HOH HOH . 
V 6 HOH D 22 422 25 HOH HOH . 
V 6 HOH D 23 423 82 HOH HOH . 
V 6 HOH D 24 424 93 HOH HOH . 
V 6 HOH D 25 425 128 HOH HOH . 
V 6 HOH D 26 426 190 HOH HOH . 
V 6 HOH D 27 427 146 HOH HOH . 
V 6 HOH D 28 428 154 HOH HOH . 
V 6 HOH D 29 429 204 HOH HOH . 
W 6 HOH E 1 401 117 HOH HOH . 
W 6 HOH E 2 402 107 HOH HOH . 
W 6 HOH E 3 403 73 HOH HOH . 
W 6 HOH E 4 404 6 HOH HOH . 
W 6 HOH E 5 405 126 HOH HOH . 
W 6 HOH E 6 406 89 HOH HOH . 
W 6 HOH E 7 407 110 HOH HOH . 
W 6 HOH E 8 408 52 HOH HOH . 
W 6 HOH E 9 409 115 HOH HOH . 
W 6 HOH E 10 410 99 HOH HOH . 
W 6 HOH E 11 411 57 HOH HOH . 
W 6 HOH E 12 412 42 HOH HOH . 
W 6 HOH E 13 413 59 HOH HOH . 
W 6 HOH E 14 414 3 HOH HOH . 
W 6 HOH E 15 415 133 HOH HOH . 
W 6 HOH E 16 416 94 HOH HOH . 
W 6 HOH E 17 417 60 HOH HOH . 
W 6 HOH E 18 418 62 HOH HOH . 
W 6 HOH E 19 419 39 HOH HOH . 
W 6 HOH E 20 420 151 HOH HOH . 
W 6 HOH E 21 421 72 HOH HOH . 
W 6 HOH E 22 422 172 HOH HOH . 
W 6 HOH E 23 423 177 HOH HOH . 
W 6 HOH E 24 424 147 HOH HOH . 
W 6 HOH E 25 425 183 HOH HOH . 
W 6 HOH E 26 426 194 HOH HOH . 
W 6 HOH E 27 427 179 HOH HOH . 
W 6 HOH E 28 428 205 HOH HOH . 
W 6 HOH E 29 429 202 HOH HOH . 
W 6 HOH E 30 430 173 HOH HOH . 
W 6 HOH E 31 431 178 HOH HOH . 
W 6 HOH E 32 432 181 HOH HOH . 
W 6 HOH E 33 433 197 HOH HOH . 
X 6 HOH F 1 401 50 HOH HOH . 
X 6 HOH F 2 402 23 HOH HOH . 
X 6 HOH F 3 403 149 HOH HOH . 
X 6 HOH F 4 404 10 HOH HOH . 
X 6 HOH F 5 405 134 HOH HOH . 
X 6 HOH F 6 406 49 HOH HOH . 
X 6 HOH F 7 407 24 HOH HOH . 
X 6 HOH F 8 408 200 HOH HOH . 
X 6 HOH F 9 409 161 HOH HOH . 
X 6 HOH F 10 410 98 HOH HOH . 
X 6 HOH F 11 411 53 HOH HOH . 
X 6 HOH F 12 412 127 HOH HOH . 
X 6 HOH F 13 413 120 HOH HOH . 
X 6 HOH F 14 414 74 HOH HOH . 
X 6 HOH F 15 415 96 HOH HOH . 
X 6 HOH F 16 416 176 HOH HOH . 
X 6 HOH F 17 417 121 HOH HOH . 
X 6 HOH F 18 418 152 HOH HOH . 
X 6 HOH F 19 419 83 HOH HOH . 
X 6 HOH F 20 420 193 HOH HOH . 
X 6 HOH F 21 421 206 HOH HOH . 
X 6 HOH F 22 422 118 HOH HOH . 
X 6 HOH F 23 423 9 HOH HOH . 
X 6 HOH F 24 424 144 HOH HOH . 
X 6 HOH F 25 425 162 HOH HOH . 
X 6 HOH F 26 426 175 HOH HOH . 
X 6 HOH F 27 427 196 HOH HOH . 
X 6 HOH F 28 428 192 HOH HOH . 
X 6 HOH F 29 429 153 HOH HOH . 
X 6 HOH F 30 430 116 HOH HOH . 
X 6 HOH F 31 431 169 HOH HOH . 
X 6 HOH F 32 432 191 HOH HOH . 
X 6 HOH F 33 433 184 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 IPA . . . O 3 -48.044 -11.275 24.725 1 33.75 ? C1 IPA 301 F 1 
HETATM 2 C C2 IPA . . . O 3 -47.779 -9.897 24.089 1 46.36 ? C2 IPA 301 F 1 
HETATM 3 C C3 IPA . . . O 3 -48.426 -8.815 24.96 1 21.58 ? C3 IPA 301 F 1 
HETATM 4 O O2 IPA . . . O 3 -46.393 -9.655 23.941 1 20.83 ? O2 IPA 301 F 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#