data_5WYQ # _model_server_result.job_id 8BEE8dqMaJUwaLwfPv1rOQ _model_server_result.datetime_utc '2024-11-04 22:46:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wyq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5WYQ # _exptl.entry_id 5WYQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5WYQ _cell.length_a 85.896 _cell.length_b 85.896 _cell.length_c 147.838 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WYQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 277 n n N HN1 SAM sing 278 n n N HN2 SAM sing 279 n n CA C SAM sing 280 n n CA CB SAM sing 281 n n CA HA SAM sing 282 n n C O SAM doub 283 n n C OXT SAM sing 284 n n CB CG SAM sing 285 n n CB HB1 SAM sing 286 n n CB HB2 SAM sing 287 n n CG SD SAM sing 288 n n CG HG1 SAM sing 289 n n CG HG2 SAM sing 290 n n SD CE SAM sing 291 n n SD C5' SAM sing 292 n n CE HE1 SAM sing 293 n n CE HE2 SAM sing 294 n n CE HE3 SAM sing 295 n n C5' C4' SAM sing 296 n n C5' "H5'1" SAM sing 297 n n C5' "H5'2" SAM sing 298 n n C4' O4' SAM sing 299 n n C4' C3' SAM sing 300 n n C4' H4' SAM sing 301 n n O4' C1' SAM sing 302 n n C3' O3' SAM sing 303 n n C3' C2' SAM sing 304 n n C3' H3' SAM sing 305 n n O3' HO3' SAM sing 306 n n C2' O2' SAM sing 307 n n C2' C1' SAM sing 308 n n C2' H2' SAM sing 309 n n O2' HO2' SAM sing 310 n n C1' N9 SAM sing 311 n n C1' H1' SAM sing 312 n n N9 C8 SAM sing 313 n y N9 C4 SAM sing 314 n y C8 N7 SAM doub 315 n y C8 H8 SAM sing 316 n n N7 C5 SAM sing 317 n y C5 C6 SAM sing 318 n y C5 C4 SAM doub 319 n y C6 N6 SAM sing 320 n n C6 N1 SAM doub 321 n y N6 HN61 SAM sing 322 n n N6 HN62 SAM sing 323 n n N1 C2 SAM sing 324 n y C2 N3 SAM doub 325 n y C2 H2 SAM sing 326 n n N3 C4 SAM sing 327 n y # _atom_sites.entry_id 5WYQ _atom_sites.fract_transf_matrix[1][1] 0.011642 _atom_sites.fract_transf_matrix[1][2] 0.006722 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006764 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAM A 1 401 401 SAM SAM . D 2 SAM B 1 301 402 SAM SAM . E 3 HOH A 1 501 1 HOH HOH . E 3 HOH A 2 502 201 HOH HOH . E 3 HOH A 3 503 34 HOH HOH . E 3 HOH A 4 504 43 HOH HOH . E 3 HOH A 5 505 15 HOH HOH . E 3 HOH A 6 506 18 HOH HOH . E 3 HOH A 7 507 28 HOH HOH . E 3 HOH A 8 508 10 HOH HOH . E 3 HOH A 9 509 22 HOH HOH . E 3 HOH A 10 510 51 HOH HOH . E 3 HOH A 11 511 17 HOH HOH . E 3 HOH A 12 512 89 HOH HOH . E 3 HOH A 13 513 65 HOH HOH . E 3 HOH A 14 514 49 HOH HOH . E 3 HOH A 15 515 5 HOH HOH . E 3 HOH A 16 516 149 HOH HOH . E 3 HOH A 17 517 145 HOH HOH . E 3 HOH A 18 518 48 HOH HOH . E 3 HOH A 19 519 96 HOH HOH . E 3 HOH A 20 520 139 HOH HOH . E 3 HOH A 21 521 199 HOH HOH . E 3 HOH A 22 522 8 HOH HOH . E 3 HOH A 23 523 23 HOH HOH . E 3 HOH A 24 524 9 HOH HOH . E 3 HOH A 25 525 24 HOH HOH . E 3 HOH A 26 526 27 HOH HOH . E 3 HOH A 27 527 69 HOH HOH . E 3 HOH A 28 528 47 HOH HOH . E 3 HOH A 29 529 21 HOH HOH . E 3 HOH A 30 530 141 HOH HOH . E 3 HOH A 31 531 93 HOH HOH . E 3 HOH A 32 532 36 HOH HOH . E 3 HOH A 33 533 39 HOH HOH . E 3 HOH A 34 534 138 HOH HOH . E 3 HOH A 35 535 25 HOH HOH . E 3 HOH A 36 536 55 HOH HOH . E 3 HOH A 37 537 64 HOH HOH . E 3 HOH A 38 538 128 HOH HOH . E 3 HOH A 39 539 60 HOH HOH . E 3 HOH A 40 540 73 HOH HOH . E 3 HOH A 41 541 14 HOH HOH . E 3 HOH A 42 542 204 HOH HOH . E 3 HOH A 43 543 13 HOH HOH . E 3 HOH A 44 544 63 HOH HOH . E 3 HOH A 45 545 191 HOH HOH . E 3 HOH A 46 546 45 HOH HOH . E 3 HOH A 47 547 129 HOH HOH . E 3 HOH A 48 548 118 HOH HOH . E 3 HOH A 49 549 16 HOH HOH . E 3 HOH A 50 550 30 HOH HOH . E 3 HOH A 51 551 56 HOH HOH . E 3 HOH A 52 552 70 HOH HOH . E 3 HOH A 53 553 195 HOH HOH . E 3 HOH A 54 554 58 HOH HOH . E 3 HOH A 55 555 133 HOH HOH . E 3 HOH A 56 556 115 HOH HOH . E 3 HOH A 57 557 79 HOH HOH . E 3 HOH A 58 558 52 HOH HOH . E 3 HOH A 59 559 164 HOH HOH . E 3 HOH A 60 560 111 HOH HOH . E 3 HOH A 61 561 178 HOH HOH . E 3 HOH A 62 562 140 HOH HOH . E 3 HOH A 63 563 125 HOH HOH . E 3 HOH A 64 564 172 HOH HOH . E 3 HOH A 65 565 83 HOH HOH . E 3 HOH A 66 566 168 HOH HOH . E 3 HOH A 67 567 54 HOH HOH . E 3 HOH A 68 568 81 HOH HOH . E 3 HOH A 69 569 122 HOH HOH . E 3 HOH A 70 570 84 HOH HOH . E 3 HOH A 71 571 171 HOH HOH . E 3 HOH A 72 572 19 HOH HOH . E 3 HOH A 73 573 110 HOH HOH . E 3 HOH A 74 574 99 HOH HOH . E 3 HOH A 75 575 71 HOH HOH . E 3 HOH A 76 576 105 HOH HOH . E 3 HOH A 77 577 101 HOH HOH . E 3 HOH A 78 578 76 HOH HOH . E 3 HOH A 79 579 120 HOH HOH . E 3 HOH A 80 580 85 HOH HOH . E 3 HOH A 81 581 119 HOH HOH . E 3 HOH A 82 582 198 HOH HOH . E 3 HOH A 83 583 109 HOH HOH . E 3 HOH A 84 584 100 HOH HOH . E 3 HOH A 85 585 167 HOH HOH . E 3 HOH A 86 586 203 HOH HOH . F 3 HOH B 1 401 40 HOH HOH . F 3 HOH B 2 402 38 HOH HOH . F 3 HOH B 3 403 37 HOH HOH . F 3 HOH B 4 404 142 HOH HOH . F 3 HOH B 5 405 176 HOH HOH . F 3 HOH B 6 406 35 HOH HOH . F 3 HOH B 7 407 74 HOH HOH . F 3 HOH B 8 408 66 HOH HOH . F 3 HOH B 9 409 7 HOH HOH . F 3 HOH B 10 410 130 HOH HOH . F 3 HOH B 11 411 86 HOH HOH . F 3 HOH B 12 412 62 HOH HOH . F 3 HOH B 13 413 181 HOH HOH . F 3 HOH B 14 414 4 HOH HOH . F 3 HOH B 15 415 152 HOH HOH . F 3 HOH B 16 416 97 HOH HOH . F 3 HOH B 17 417 206 HOH HOH . F 3 HOH B 18 418 202 HOH HOH . F 3 HOH B 19 419 12 HOH HOH . F 3 HOH B 20 420 127 HOH HOH . F 3 HOH B 21 421 155 HOH HOH . F 3 HOH B 22 422 32 HOH HOH . F 3 HOH B 23 423 33 HOH HOH . F 3 HOH B 24 424 107 HOH HOH . F 3 HOH B 25 425 67 HOH HOH . F 3 HOH B 26 426 136 HOH HOH . F 3 HOH B 27 427 50 HOH HOH . F 3 HOH B 28 428 3 HOH HOH . F 3 HOH B 29 429 59 HOH HOH . F 3 HOH B 30 430 2 HOH HOH . F 3 HOH B 31 431 6 HOH HOH . F 3 HOH B 32 432 31 HOH HOH . F 3 HOH B 33 433 143 HOH HOH . F 3 HOH B 34 434 146 HOH HOH . F 3 HOH B 35 435 82 HOH HOH . F 3 HOH B 36 436 26 HOH HOH . F 3 HOH B 37 437 106 HOH HOH . F 3 HOH B 38 438 173 HOH HOH . F 3 HOH B 39 439 41 HOH HOH . F 3 HOH B 40 440 11 HOH HOH . F 3 HOH B 41 441 20 HOH HOH . F 3 HOH B 42 442 169 HOH HOH . F 3 HOH B 43 443 44 HOH HOH . F 3 HOH B 44 444 162 HOH HOH . F 3 HOH B 45 445 91 HOH HOH . F 3 HOH B 46 446 68 HOH HOH . F 3 HOH B 47 447 154 HOH HOH . F 3 HOH B 48 448 188 HOH HOH . F 3 HOH B 49 449 160 HOH HOH . F 3 HOH B 50 450 163 HOH HOH . F 3 HOH B 51 451 88 HOH HOH . F 3 HOH B 52 452 72 HOH HOH . F 3 HOH B 53 453 190 HOH HOH . F 3 HOH B 54 454 126 HOH HOH . F 3 HOH B 55 455 192 HOH HOH . F 3 HOH B 56 456 61 HOH HOH . F 3 HOH B 57 457 161 HOH HOH . F 3 HOH B 58 458 151 HOH HOH . F 3 HOH B 59 459 46 HOH HOH . F 3 HOH B 60 460 112 HOH HOH . F 3 HOH B 61 461 113 HOH HOH . F 3 HOH B 62 462 29 HOH HOH . F 3 HOH B 63 463 117 HOH HOH . F 3 HOH B 64 464 57 HOH HOH . F 3 HOH B 65 465 177 HOH HOH . F 3 HOH B 66 466 197 HOH HOH . F 3 HOH B 67 467 186 HOH HOH . F 3 HOH B 68 468 153 HOH HOH . F 3 HOH B 69 469 42 HOH HOH . F 3 HOH B 70 470 102 HOH HOH . F 3 HOH B 71 471 207 HOH HOH . F 3 HOH B 72 472 108 HOH HOH . F 3 HOH B 73 473 98 HOH HOH . F 3 HOH B 74 474 158 HOH HOH . F 3 HOH B 75 475 87 HOH HOH . F 3 HOH B 76 476 114 HOH HOH . F 3 HOH B 77 477 77 HOH HOH . F 3 HOH B 78 478 131 HOH HOH . F 3 HOH B 79 479 137 HOH HOH . F 3 HOH B 80 480 189 HOH HOH . F 3 HOH B 81 481 104 HOH HOH . F 3 HOH B 82 482 103 HOH HOH . F 3 HOH B 83 483 78 HOH HOH . F 3 HOH B 84 484 205 HOH HOH . F 3 HOH B 85 485 200 HOH HOH . F 3 HOH B 86 486 170 HOH HOH . F 3 HOH B 87 487 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . C 2 -28.431 13.636 -31.811 1 71.26 ? N SAM 401 A 1 HETATM 2 C CA SAM . . . C 2 -29.676 12.897 -31.576 1 70.67 ? CA SAM 401 A 1 HETATM 3 C C SAM . . . C 2 -30.828 13.519 -32.422 1 73.71 ? C SAM 401 A 1 HETATM 4 O O SAM . . . C 2 -30.639 13.535 -33.659 1 75.52 ? O SAM 401 A 1 HETATM 5 O OXT SAM . . . C 2 -31.858 13.966 -31.847 1 72.42 ? OXT SAM 401 A 1 HETATM 6 C CB SAM . . . C 2 -29.978 12.8 -30.071 1 66.64 ? CB SAM 401 A 1 HETATM 7 C CG SAM . . . C 2 -30.888 11.602 -29.844 1 63.82 ? CG SAM 401 A 1 HETATM 8 S SD SAM . . . C 2 -30.993 11.167 -28.069 1 59.23 ? SD SAM 401 A 1 HETATM 9 C CE SAM . . . C 2 -29.605 10.091 -27.736 1 56.53 ? CE SAM 401 A 1 HETATM 10 C C5' SAM . . . C 2 -32.539 10.186 -27.853 1 50.26 ? C5' SAM 401 A 1 HETATM 11 C C4' SAM . . . C 2 -33.762 11.052 -27.496 1 45.34 ? C4' SAM 401 A 1 HETATM 12 O O4' SAM . . . C 2 -33.514 11.831 -26.31 1 42.68 ? O4' SAM 401 A 1 HETATM 13 C C3' SAM . . . C 2 -34.107 12.106 -28.523 1 42.71 ? C3' SAM 401 A 1 HETATM 14 O O3' SAM . . . C 2 -34.821 11.504 -29.618 1 43.28 ? O3' SAM 401 A 1 HETATM 15 C C2' SAM . . . C 2 -35.022 12.986 -27.688 1 39.35 ? C2' SAM 401 A 1 HETATM 16 O O2' SAM . . . C 2 -36.406 12.413 -27.659 1 35.89 ? O2' SAM 401 A 1 HETATM 17 C C1' SAM . . . C 2 -34.426 12.93 -26.292 1 36.19 ? C1' SAM 401 A 1 HETATM 18 N N9 SAM . . . C 2 -33.632 14.125 -25.874 1 36.95 ? N9 SAM 401 A 1 HETATM 19 C C8 SAM . . . C 2 -32.302 14.068 -25.69 1 37.86 ? C8 SAM 401 A 1 HETATM 20 N N7 SAM . . . C 2 -31.874 15.264 -25.269 1 38.18 ? N7 SAM 401 A 1 HETATM 21 C C5 SAM . . . C 2 -32.945 16.068 -25.155 1 38.57 ? C5 SAM 401 A 1 HETATM 22 C C6 SAM . . . C 2 -33.066 17.359 -24.835 1 39.03 ? C6 SAM 401 A 1 HETATM 23 N N6 SAM . . . C 2 -31.955 18.004 -24.458 1 39.21 ? N6 SAM 401 A 1 HETATM 24 N N1 SAM . . . C 2 -34.248 17.993 -24.887 1 39.05 ? N1 SAM 401 A 1 HETATM 25 C C2 SAM . . . C 2 -35.401 17.29 -25.2 1 38.07 ? C2 SAM 401 A 1 HETATM 26 N N3 SAM . . . C 2 -35.241 15.946 -25.539 1 35.01 ? N3 SAM 401 A 1 HETATM 27 C C4 SAM . . . C 2 -34.029 15.369 -25.54 1 36.63 ? C4 SAM 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #