data_5WYS # _model_server_result.job_id tDXkM8uBIQ4a-5bLTZGyZA _model_server_result.datetime_utc '2024-12-26 19:51:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wys # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5WYS # _exptl.entry_id 5WYS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.115 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-[(3R)-3-(4-boranylphenyl)-3-oxidanyl-propyl]-2-oxidanyl-benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WYS _cell.length_a 118.141 _cell.length_b 118.141 _cell.length_c 96.194 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WYS _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H17 B O4' _chem_comp.formula_weight 284.115 _chem_comp.id 7V6 _chem_comp.mon_nstd_flag . _chem_comp.name '5-[(3R)-3-(4-boranylphenyl)-3-oxidanyl-propyl]-2-oxidanyl-benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C07 7V6 sing 1 n n C03 C02 7V6 doub 2 n y C03 C04 7V6 sing 3 n y C02 C01 7V6 sing 4 n y O04 C16 7V6 doub 5 n n C07 C04 7V6 sing 6 n n C07 C08 7V6 sing 7 n n C04 C05 7V6 doub 8 n y C09 C08 7V6 sing 9 n n C09 C10 7V6 sing 10 n n C01 B 7V6 sing 11 n n C01 C06 7V6 doub 12 n y C15 C10 7V6 doub 13 n y C15 C14 7V6 sing 14 n y C16 O03 7V6 sing 15 n n C16 C14 7V6 sing 16 n n C05 C06 7V6 sing 17 n y C10 C11 7V6 sing 18 n y C14 C13 7V6 doub 19 n y C11 C12 7V6 doub 20 n y C13 O02 7V6 sing 21 n n C13 C12 7V6 sing 22 n y C15 H1 7V6 sing 23 n n C02 H2 7V6 sing 24 n n C03 H3 7V6 sing 25 n n C05 H4 7V6 sing 26 n n C06 H5 7V6 sing 27 n n C07 H6 7V6 sing 28 n n C08 H7 7V6 sing 29 n n C08 H8 7V6 sing 30 n n O01 H9 7V6 sing 31 n n C09 H10 7V6 sing 32 n n C09 H11 7V6 sing 33 n n C11 H12 7V6 sing 34 n n C12 H13 7V6 sing 35 n n O02 H14 7V6 sing 36 n n B H15 7V6 sing 37 n n B H16 7V6 sing 38 n n O03 H17 7V6 sing 39 n n # _atom_sites.entry_id 5WYS _atom_sites.fract_transf_matrix[1][1] 0.008464 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008464 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 7V6 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 7V6 _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 7V6 . . . B 2 -16.018 35.774 -0.315 0.69 41.1 ? C10 7V6 601 A 1 HETATM 2 C C13 7V6 . . . B 2 -16.99 37.985 1.1 0.69 44.73 ? C13 7V6 601 A 1 HETATM 3 C C15 7V6 . . . B 2 -16.634 36.836 -0.976 0.69 44.55 ? C15 7V6 601 A 1 HETATM 4 C C01 7V6 . . . B 2 -10.147 30.483 -1.044 0.69 46.6 ? C01 7V6 601 A 1 HETATM 5 C C02 7V6 . . . B 2 -11.147 30.055 -1.894 0.69 37.1 ? C02 7V6 601 A 1 HETATM 6 C C03 7V6 . . . B 2 -12.264 30.859 -2.048 0.69 38.16 ? C03 7V6 601 A 1 HETATM 7 C C04 7V6 . . . B 2 -12.449 32.074 -1.399 0.69 38.21 ? C04 7V6 601 A 1 HETATM 8 C C05 7V6 . . . B 2 -11.432 32.493 -0.548 0.69 40.79 ? C05 7V6 601 A 1 HETATM 9 C C06 7V6 . . . B 2 -10.29 31.702 -0.37 0.69 42.69 ? C06 7V6 601 A 1 HETATM 10 C C07 7V6 . . . B 2 -13.757 32.86 -1.681 0.69 35.89 ? C07 7V6 601 A 1 HETATM 11 C C08 7V6 . . . B 2 -14.126 34.026 -0.759 0.69 33.97 ? C08 7V6 601 A 1 HETATM 12 O O01 7V6 . . . B 2 -13.767 33.336 -3.003 0.69 37.74 ? O01 7V6 601 A 1 HETATM 13 C C09 7V6 . . . B 2 -15.51 34.575 -1.131 0.69 33.98 ? C09 7V6 601 A 1 HETATM 14 C C11 7V6 . . . B 2 -15.906 35.826 1.072 0.69 40.98 ? C11 7V6 601 A 1 HETATM 15 C C12 7V6 . . . B 2 -16.385 36.928 1.779 0.69 43.77 ? C12 7V6 601 A 1 HETATM 16 C C14 7V6 . . . B 2 -17.11 37.938 -0.272 0.69 42.5 ? C14 7V6 601 A 1 HETATM 17 O O02 7V6 . . . B 2 -17.485 39.119 1.758 0.69 39.87 ? O02 7V6 601 A 1 HETATM 18 C C16 7V6 . . . B 2 -17.787 39.108 -0.974 0.69 39.17 ? C16 7V6 601 A 1 HETATM 19 B B 7V6 . . . B 2 -8.87 29.586 -0.852 0.69 42.42 0 B 7V6 601 A 1 HETATM 20 O O03 7V6 . . . B 2 -17.405 40.29 -0.771 0.69 40.77 ? O03 7V6 601 A 1 HETATM 21 O O04 7V6 . . . B 2 -18.743 38.881 -1.749 0.69 40.97 ? O04 7V6 601 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 1103 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 21 #