data_5WZ1 # _model_server_result.job_id gHTTWJl9TSq-xPOd-EcgJw _model_server_result.datetime_utc '2024-11-07 23:36:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wz1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":601}' # _entry.id 5WZ1 # _exptl.entry_id 5WZ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.39 _cell.angle_gamma 90 _cell.entry_id 5WZ1 _cell.length_a 107.549 _cell.length_b 86.847 _cell.length_c 107.556 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WZ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 ? monomeric 1 author_defined_assembly 6 ? monomeric 1 author_defined_assembly 7 ? monomeric 1 author_defined_assembly 8 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,I 1 1 B,J 2 1 C,K 3 1 D,L 4 1 E,M 5 1 F,N 6 1 G,O 7 1 H,P 8 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 275 n n N HN1 SAM sing 276 n n N HN2 SAM sing 277 n n CA C SAM sing 278 n n CA CB SAM sing 279 n n CA HA SAM sing 280 n n C O SAM doub 281 n n C OXT SAM sing 282 n n CB CG SAM sing 283 n n CB HB1 SAM sing 284 n n CB HB2 SAM sing 285 n n CG SD SAM sing 286 n n CG HG1 SAM sing 287 n n CG HG2 SAM sing 288 n n SD CE SAM sing 289 n n SD C5' SAM sing 290 n n CE HE1 SAM sing 291 n n CE HE2 SAM sing 292 n n CE HE3 SAM sing 293 n n C5' C4' SAM sing 294 n n C5' "H5'1" SAM sing 295 n n C5' "H5'2" SAM sing 296 n n C4' O4' SAM sing 297 n n C4' C3' SAM sing 298 n n C4' H4' SAM sing 299 n n O4' C1' SAM sing 300 n n C3' O3' SAM sing 301 n n C3' C2' SAM sing 302 n n C3' H3' SAM sing 303 n n O3' HO3' SAM sing 304 n n C2' O2' SAM sing 305 n n C2' C1' SAM sing 306 n n C2' H2' SAM sing 307 n n O2' HO2' SAM sing 308 n n C1' N9 SAM sing 309 n n C1' H1' SAM sing 310 n n N9 C8 SAM sing 311 n y N9 C4 SAM sing 312 n y C8 N7 SAM doub 313 n y C8 H8 SAM sing 314 n n N7 C5 SAM sing 315 n y C5 C6 SAM sing 316 n y C5 C4 SAM doub 317 n y C6 N6 SAM sing 318 n n C6 N1 SAM doub 319 n y N6 HN61 SAM sing 320 n n N6 HN62 SAM sing 321 n n N1 C2 SAM sing 322 n y C2 N3 SAM doub 323 n y C2 H2 SAM sing 324 n n N3 C4 SAM sing 325 n y # _atom_sites.entry_id 5WZ1 _atom_sites.fract_transf_matrix[1][1] 0.009298 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001205 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009375 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 SAM A 1 601 601 SAM SAM . J 2 SAM B 1 601 601 SAM SAM . K 2 SAM C 1 601 601 SAM SAM . L 2 SAM D 1 601 601 SAM SAM . M 2 SAM E 1 601 601 SAM SAM . N 2 SAM F 1 601 601 SAM SAM . O 2 SAM G 1 601 601 SAM SAM . P 2 SAM H 1 601 601 SAM SAM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . I 2 0.274 1.951 -2.935 1 26.42 ? N SAM 601 A 1 HETATM 2 C CA SAM . . . I 2 1.556 2.565 -2.618 1 25.43 ? CA SAM 601 A 1 HETATM 3 C C SAM . . . I 2 2.689 1.538 -2.665 1 24.87 ? C SAM 601 A 1 HETATM 4 O O SAM . . . I 2 2.496 0.407 -3.116 1 29.79 ? O SAM 601 A 1 HETATM 5 O OXT SAM . . . I 2 3.821 1.808 -2.259 1 24.6 ? OXT SAM 601 A 1 HETATM 6 C CB SAM . . . I 2 1.494 3.29 -1.274 1 29.02 ? CB SAM 601 A 1 HETATM 7 C CG SAM . . . I 2 0.309 2.869 -0.41 1 28.86 ? CG SAM 601 A 1 HETATM 8 S SD SAM . . . I 2 0.261 3.625 1.233 1 36.25 ? SD SAM 601 A 1 HETATM 9 C CE SAM . . . I 2 -0.789 2.457 2.136 1 23.88 ? CE SAM 601 A 1 HETATM 10 C C5' SAM . . . I 2 -0.92 4.976 1.009 1 25.12 ? C5' SAM 601 A 1 HETATM 11 C C4' SAM . . . I 2 -0.281 6.346 0.846 1 24.43 ? C4' SAM 601 A 1 HETATM 12 O O4' SAM . . . I 2 -1.228 7.27 0.368 1 21.4 ? O4' SAM 601 A 1 HETATM 13 C C3' SAM . . . I 2 0.253 6.917 2.145 1 24.3 ? C3' SAM 601 A 1 HETATM 14 O O3' SAM . . . I 2 1.651 6.963 2.083 1 34.91 ? O3' SAM 601 A 1 HETATM 15 C C2' SAM . . . I 2 -0.259 8.334 2.211 1 24.54 ? C2' SAM 601 A 1 HETATM 16 O O2' SAM . . . I 2 0.81 9.233 2.361 1 27.12 ? O2' SAM 601 A 1 HETATM 17 C C1' SAM . . . I 2 -0.927 8.546 0.873 1 23.74 ? C1' SAM 601 A 1 HETATM 18 N N9 SAM . . . I 2 -2.171 9.29 1.034 1 22.68 ? N9 SAM 601 A 1 HETATM 19 C C8 SAM . . . I 2 -3.108 9.12 2.004 1 22.84 ? C8 SAM 601 A 1 HETATM 20 N N7 SAM . . . I 2 -4.11 9.998 1.796 1 26.74 ? N7 SAM 601 A 1 HETATM 21 C C5 SAM . . . I 2 -3.821 10.725 0.698 1 24.35 ? C5 SAM 601 A 1 HETATM 22 C C6 SAM . . . I 2 -4.492 11.744 0.05 1 23.98 ? C6 SAM 601 A 1 HETATM 23 N N6 SAM . . . I 2 -5.657 12.173 0.508 1 22.39 ? N6 SAM 601 A 1 HETATM 24 N N1 SAM . . . I 2 -3.939 12.311 -1.075 1 24.42 ? N1 SAM 601 A 1 HETATM 25 C C2 SAM . . . I 2 -2.723 11.858 -1.548 1 26.39 ? C2 SAM 601 A 1 HETATM 26 N N3 SAM . . . I 2 -2.051 10.84 -0.896 1 20.26 ? N3 SAM 601 A 1 HETATM 27 C C4 SAM . . . I 2 -2.601 10.287 0.209 1 20.94 ? C4 SAM 601 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #