data_5WZ1
#
_model_server_result.job_id            YmX2JtaS_Ao55PSr9lcVVg 
_model_server_result.datetime_utc      '2024-11-07 23:37:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5wz1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":601}' 
#
_entry.id    5WZ1 
#
_exptl.entry_id    5WZ1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.39 
_cell.angle_gamma         90 
_cell.entry_id            5WZ1 
_cell.length_a            107.549 
_cell.length_b            86.847 
_cell.length_c            107.556 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5WZ1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
? monomeric 1 author_defined_assembly 7 
? monomeric 1 author_defined_assembly 8 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,I 1 1 
B,J 2 1 
C,K 3 1 
D,L 4 1 
E,M 5 1 
F,N 6 1 
G,O 7 1 
H,P 8 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 275 n n 
N HN1 SAM sing 276 n n 
N HN2 SAM sing 277 n n 
CA C SAM sing 278 n n 
CA CB SAM sing 279 n n 
CA HA SAM sing 280 n n 
C O SAM doub 281 n n 
C OXT SAM sing 282 n n 
CB CG SAM sing 283 n n 
CB HB1 SAM sing 284 n n 
CB HB2 SAM sing 285 n n 
CG SD SAM sing 286 n n 
CG HG1 SAM sing 287 n n 
CG HG2 SAM sing 288 n n 
SD CE SAM sing 289 n n 
SD C5' SAM sing 290 n n 
CE HE1 SAM sing 291 n n 
CE HE2 SAM sing 292 n n 
CE HE3 SAM sing 293 n n 
C5' C4' SAM sing 294 n n 
C5' "H5'1" SAM sing 295 n n 
C5' "H5'2" SAM sing 296 n n 
C4' O4' SAM sing 297 n n 
C4' C3' SAM sing 298 n n 
C4' H4' SAM sing 299 n n 
O4' C1' SAM sing 300 n n 
C3' O3' SAM sing 301 n n 
C3' C2' SAM sing 302 n n 
C3' H3' SAM sing 303 n n 
O3' HO3' SAM sing 304 n n 
C2' O2' SAM sing 305 n n 
C2' C1' SAM sing 306 n n 
C2' H2' SAM sing 307 n n 
O2' HO2' SAM sing 308 n n 
C1' N9 SAM sing 309 n n 
C1' H1' SAM sing 310 n n 
N9 C8 SAM sing 311 n y 
N9 C4 SAM sing 312 n y 
C8 N7 SAM doub 313 n y 
C8 H8 SAM sing 314 n n 
N7 C5 SAM sing 315 n y 
C5 C6 SAM sing 316 n y 
C5 C4 SAM doub 317 n y 
C6 N6 SAM sing 318 n n 
C6 N1 SAM doub 319 n y 
N6 HN61 SAM sing 320 n n 
N6 HN62 SAM sing 321 n n 
N1 C2 SAM sing 322 n y 
C2 N3 SAM doub 323 n y 
C2 H2 SAM sing 324 n n 
N3 C4 SAM sing 325 n y 
#
_atom_sites.entry_id                     5WZ1 
_atom_sites.fract_transf_matrix[1][1]    0.009298 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001205 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011515 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009375 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 SAM A 1 601 601 SAM SAM . 
J 2 SAM B 1 601 601 SAM SAM . 
K 2 SAM C 1 601 601 SAM SAM . 
L 2 SAM D 1 601 601 SAM SAM . 
M 2 SAM E 1 601 601 SAM SAM . 
N 2 SAM F 1 601 601 SAM SAM . 
O 2 SAM G 1 601 601 SAM SAM . 
P 2 SAM H 1 601 601 SAM SAM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . O 2 -55.065 0.177 -1.556 1 39.49 ? N SAM 601 G 1 
HETATM 2 C CA SAM . . . O 2 -53.707 0.679 -1.364 1 41.78 ? CA SAM 601 G 1 
HETATM 3 C C SAM . . . O 2 -52.651 -0.373 -1.721 1 40.2 ? C SAM 601 G 1 
HETATM 4 O O SAM . . . O 2 -52.968 -1.434 -2.261 1 44.54 ? O SAM 601 G 1 
HETATM 5 O OXT SAM . . . O 2 -51.454 -0.188 -1.486 1 39.83 ? OXT SAM 601 G 1 
HETATM 6 C CB SAM . . . O 2 -53.509 1.239 0.047 1 45.95 ? CB SAM 601 G 1 
HETATM 7 C CG SAM . . . O 2 -54.718 1.069 0.964 1 41.54 ? CG SAM 601 G 1 
HETATM 8 S SD SAM . . . O 2 -54.521 1.798 2.608 1 46.46 ? SD SAM 601 G 1 
HETATM 9 C CE SAM . . . O 2 -55.437 0.598 3.608 1 52.41 ? CE SAM 601 G 1 
HETATM 10 C C5' SAM . . . O 2 -55.697 3.177 2.605 1 45.24 ? C5' SAM 601 G 1 
HETATM 11 C C4' SAM . . . O 2 -55.044 4.544 2.423 1 48.64 ? C4' SAM 601 G 1 
HETATM 12 O O4' SAM . . . O 2 -55.994 5.54 2.111 1 45.12 ? O4' SAM 601 G 1 
HETATM 13 C C3' SAM . . . O 2 -54.307 5.057 3.649 1 49.4 ? C3' SAM 601 G 1 
HETATM 14 O O3' SAM . . . O 2 -52.924 4.919 3.456 1 51.06 ? O3' SAM 601 G 1 
HETATM 15 C C2' SAM . . . O 2 -54.623 6.532 3.724 1 42.39 ? C2' SAM 601 G 1 
HETATM 16 O O2' SAM . . . O 2 -53.433 7.272 3.629 1 44.01 ? O2' SAM 601 G 1 
HETATM 17 C C1' SAM . . . O 2 -55.477 6.791 2.505 1 44.67 ? C1' SAM 601 G 1 
HETATM 18 N N9 SAM . . . O 2 -56.595 7.667 2.834 1 39.58 ? N9 SAM 601 G 1 
HETATM 19 C C8 SAM . . . O 2 -57.314 7.666 3.987 1 41.99 ? C8 SAM 601 G 1 
HETATM 20 N N7 SAM . . . O 2 -58.271 8.613 3.901 1 41.76 ? N7 SAM 601 G 1 
HETATM 21 C C5 SAM . . . O 2 -58.169 9.214 2.698 1 39.49 ? C5 SAM 601 G 1 
HETATM 22 C C6 SAM . . . O 2 -58.886 10.23 2.104 1 39.1 ? C6 SAM 601 G 1 
HETATM 23 N N6 SAM . . . O 2 -59.891 10.794 2.753 1 37.36 ? N6 SAM 601 G 1 
HETATM 24 N N1 SAM . . . O 2 -58.552 10.653 0.838 1 39.67 ? N1 SAM 601 G 1 
HETATM 25 C C2 SAM . . . O 2 -57.501 10.056 0.166 1 36.07 ? C2 SAM 601 G 1 
HETATM 26 N N3 SAM . . . O 2 -56.782 9.036 0.765 1 37.14 ? N3 SAM 601 G 1 
HETATM 27 C C4 SAM . . . O 2 -57.117 8.626 2.014 1 36.69 ? C4 SAM 601 G 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           27 
#