data_5WZ2
#
_model_server_result.job_id            nojLTc4CoOzJixZKYevTTw 
_model_server_result.datetime_utc      '2024-11-27 03:45:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5wz2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    5WZ2 
#
_exptl.entry_id    5WZ2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.1 
_cell.angle_gamma         90 
_cell.entry_id            5WZ2 
_cell.length_a            75.131 
_cell.length_b            78.274 
_cell.length_c            136.38 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5WZ2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,J 1 1 
B,F,G,K 2 1 
C,H,I,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 F N N 
? 2 H N N 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 363 n n 
N HN1 SAM sing 364 n n 
N HN2 SAM sing 365 n n 
CA C SAM sing 366 n n 
CA CB SAM sing 367 n n 
CA HA SAM sing 368 n n 
C O SAM doub 369 n n 
C OXT SAM sing 370 n n 
CB CG SAM sing 371 n n 
CB HB1 SAM sing 372 n n 
CB HB2 SAM sing 373 n n 
CG SD SAM sing 374 n n 
CG HG1 SAM sing 375 n n 
CG HG2 SAM sing 376 n n 
SD CE SAM sing 377 n n 
SD C5' SAM sing 378 n n 
CE HE1 SAM sing 379 n n 
CE HE2 SAM sing 380 n n 
CE HE3 SAM sing 381 n n 
C5' C4' SAM sing 382 n n 
C5' "H5'1" SAM sing 383 n n 
C5' "H5'2" SAM sing 384 n n 
C4' O4' SAM sing 385 n n 
C4' C3' SAM sing 386 n n 
C4' H4' SAM sing 387 n n 
O4' C1' SAM sing 388 n n 
C3' O3' SAM sing 389 n n 
C3' C2' SAM sing 390 n n 
C3' H3' SAM sing 391 n n 
O3' HO3' SAM sing 392 n n 
C2' O2' SAM sing 393 n n 
C2' C1' SAM sing 394 n n 
C2' H2' SAM sing 395 n n 
O2' HO2' SAM sing 396 n n 
C1' N9 SAM sing 397 n n 
C1' H1' SAM sing 398 n n 
N9 C8 SAM sing 399 n y 
N9 C4 SAM sing 400 n y 
C8 N7 SAM doub 401 n y 
C8 H8 SAM sing 402 n n 
N7 C5 SAM sing 403 n y 
C5 C6 SAM sing 404 n y 
C5 C4 SAM doub 405 n y 
C6 N6 SAM sing 406 n n 
C6 N1 SAM doub 407 n y 
N6 HN61 SAM sing 408 n n 
N6 HN62 SAM sing 409 n n 
N1 C2 SAM sing 410 n y 
C2 N3 SAM doub 411 n y 
C2 H2 SAM sing 412 n n 
N3 C4 SAM sing 413 n y 
#
_atom_sites.entry_id                     5WZ2 
_atom_sites.fract_transf_matrix[1][1]    0.01331 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000022 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012776 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007332 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 SAM A 1 601 601 SAM SAM . 
E 3 GTA A 1 602 606 GTA GTA . 
F 2 SAM B 1 601 601 SAM SAM . 
G 3 GTA B 1 602 606 GTA GTA . 
H 2 SAM C 1 601 601 SAM SAM . 
I 3 GTA C 1 602 606 GTA GTA . 
J 4 HOH A 1 701 55 HOH HOH . 
J 4 HOH A 2 702 65 HOH HOH . 
J 4 HOH A 3 703 10 HOH HOH . 
J 4 HOH A 4 704 42 HOH HOH . 
J 4 HOH A 5 705 2 HOH HOH . 
J 4 HOH A 6 706 22 HOH HOH . 
J 4 HOH A 7 707 4 HOH HOH . 
J 4 HOH A 8 708 69 HOH HOH . 
J 4 HOH A 9 709 29 HOH HOH . 
J 4 HOH A 10 710 45 HOH HOH . 
J 4 HOH A 11 711 8 HOH HOH . 
J 4 HOH A 12 712 59 HOH HOH . 
J 4 HOH A 13 713 53 HOH HOH . 
J 4 HOH A 14 714 40 HOH HOH . 
J 4 HOH A 15 715 27 HOH HOH . 
J 4 HOH A 16 716 70 HOH HOH . 
J 4 HOH A 17 717 34 HOH HOH . 
J 4 HOH A 18 718 16 HOH HOH . 
J 4 HOH A 19 719 54 HOH HOH . 
J 4 HOH A 20 720 49 HOH HOH . 
J 4 HOH A 21 721 32 HOH HOH . 
J 4 HOH A 22 722 57 HOH HOH . 
J 4 HOH A 23 723 1 HOH HOH . 
J 4 HOH A 24 724 38 HOH HOH . 
J 4 HOH A 25 725 64 HOH HOH . 
J 4 HOH A 26 726 20 HOH HOH . 
J 4 HOH A 27 727 79 HOH HOH . 
J 4 HOH A 28 728 84 HOH HOH . 
J 4 HOH A 29 729 30 HOH HOH . 
J 4 HOH A 30 730 89 HOH HOH . 
J 4 HOH A 31 731 6 HOH HOH . 
J 4 HOH A 32 732 77 HOH HOH . 
J 4 HOH A 33 733 13 HOH HOH . 
J 4 HOH A 34 734 47 HOH HOH . 
J 4 HOH A 35 735 46 HOH HOH . 
J 4 HOH A 36 736 44 HOH HOH . 
J 4 HOH A 37 737 63 HOH HOH . 
J 4 HOH A 38 738 24 HOH HOH . 
J 4 HOH A 39 739 78 HOH HOH . 
J 4 HOH A 40 740 17 HOH HOH . 
J 4 HOH A 41 741 88 HOH HOH . 
J 4 HOH A 42 742 68 HOH HOH . 
J 4 HOH A 43 743 67 HOH HOH . 
J 4 HOH A 44 744 7 HOH HOH . 
K 4 HOH B 1 701 83 HOH HOH . 
K 4 HOH B 2 702 5 HOH HOH . 
K 4 HOH B 3 703 3 HOH HOH . 
K 4 HOH B 4 704 37 HOH HOH . 
K 4 HOH B 5 705 85 HOH HOH . 
K 4 HOH B 6 706 21 HOH HOH . 
K 4 HOH B 7 707 86 HOH HOH . 
K 4 HOH B 8 708 52 HOH HOH . 
K 4 HOH B 9 709 50 HOH HOH . 
K 4 HOH B 10 710 23 HOH HOH . 
K 4 HOH B 11 711 58 HOH HOH . 
K 4 HOH B 12 712 90 HOH HOH . 
K 4 HOH B 13 713 14 HOH HOH . 
K 4 HOH B 14 714 75 HOH HOH . 
K 4 HOH B 15 715 71 HOH HOH . 
K 4 HOH B 16 716 25 HOH HOH . 
K 4 HOH B 17 717 51 HOH HOH . 
K 4 HOH B 18 718 15 HOH HOH . 
K 4 HOH B 19 719 41 HOH HOH . 
K 4 HOH B 20 720 36 HOH HOH . 
K 4 HOH B 21 721 72 HOH HOH . 
K 4 HOH B 22 722 81 HOH HOH . 
K 4 HOH B 23 723 19 HOH HOH . 
K 4 HOH B 24 724 48 HOH HOH . 
K 4 HOH B 25 725 80 HOH HOH . 
K 4 HOH B 26 726 28 HOH HOH . 
K 4 HOH B 27 727 60 HOH HOH . 
K 4 HOH B 28 728 73 HOH HOH . 
K 4 HOH B 29 729 87 HOH HOH . 
K 4 HOH B 30 730 74 HOH HOH . 
L 4 HOH C 1 701 31 HOH HOH . 
L 4 HOH C 2 702 26 HOH HOH . 
L 4 HOH C 3 703 18 HOH HOH . 
L 4 HOH C 4 704 43 HOH HOH . 
L 4 HOH C 5 705 11 HOH HOH . 
L 4 HOH C 6 706 9 HOH HOH . 
L 4 HOH C 7 707 61 HOH HOH . 
L 4 HOH C 8 708 39 HOH HOH . 
L 4 HOH C 9 709 66 HOH HOH . 
L 4 HOH C 10 710 76 HOH HOH . 
L 4 HOH C 11 711 33 HOH HOH . 
L 4 HOH C 12 712 35 HOH HOH . 
L 4 HOH C 13 713 56 HOH HOH . 
L 4 HOH C 14 714 82 HOH HOH . 
L 4 HOH C 15 715 12 HOH HOH . 
L 4 HOH C 16 716 62 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . D 2 19.952 -0.369 15.385 1 41.36 ? N SAM 601 A 1 
HETATM 2 C CA SAM . . . D 2 18.608 -0.684 15.829 1 42.96 ? CA SAM 601 A 1 
HETATM 3 C C SAM . . . D 2 18.107 -1.885 15.082 1 41.44 ? C SAM 601 A 1 
HETATM 4 O O SAM . . . D 2 18.646 -2.171 13.99 1 43.5 ? O SAM 601 A 1 
HETATM 5 O OXT SAM . . . D 2 17.175 -2.556 15.578 1 35.82 ? OXT SAM 601 A 1 
HETATM 6 C CB SAM . . . D 2 17.697 0.51 15.563 1 49.26 ? CB SAM 601 A 1 
HETATM 7 C CG SAM . . . D 2 18.241 1.763 16.241 1 52.94 ? CG SAM 601 A 1 
HETATM 8 S SD SAM . . . D 2 17.163 2.333 17.368 1 56.41 ? SD SAM 601 A 1 
HETATM 9 C CE SAM . . . D 2 15.884 3.046 16.582 1 63.34 ? CE SAM 601 A 1 
HETATM 10 C C5' SAM . . . D 2 17.925 3.452 18.334 1 45.57 ? C5' SAM 601 A 1 
HETATM 11 C C4' SAM . . . D 2 17.809 2.976 19.778 1 52.92 ? C4' SAM 601 A 1 
HETATM 12 O O4' SAM . . . D 2 18.692 3.684 20.651 1 50.39 ? O4' SAM 601 A 1 
HETATM 13 C C3' SAM . . . D 2 16.407 3.145 20.346 1 52.18 ? C3' SAM 601 A 1 
HETATM 14 O O3' SAM . . . D 2 15.796 1.859 20.48 1 50.54 ? O3' SAM 601 A 1 
HETATM 15 C C2' SAM . . . D 2 16.596 3.781 21.71 1 47.05 ? C2' SAM 601 A 1 
HETATM 16 O O2' SAM . . . D 2 15.876 3.05 22.706 1 53.66 ? O2' SAM 601 A 1 
HETATM 17 C C1' SAM . . . D 2 18.094 3.688 21.949 1 48.16 ? C1' SAM 601 A 1 
HETATM 18 N N9 SAM . . . D 2 18.605 4.797 22.794 1 55.89 ? N9 SAM 601 A 1 
HETATM 19 C C8 SAM . . . D 2 18.271 6.1 22.712 1 53.71 ? C8 SAM 601 A 1 
HETATM 20 N N7 SAM . . . D 2 18.93 6.83 23.651 1 50.58 ? N7 SAM 601 A 1 
HETATM 21 C C5 SAM . . . D 2 19.701 5.981 24.358 1 49.47 ? C5 SAM 601 A 1 
HETATM 22 C C6 SAM . . . D 2 20.65 6.081 25.491 1 48.05 ? C6 SAM 601 A 1 
HETATM 23 N N6 SAM . . . D 2 20.914 7.271 26.077 1 51.49 ? N6 SAM 601 A 1 
HETATM 24 N N1 SAM . . . D 2 21.244 4.945 25.923 1 49.83 ? N1 SAM 601 A 1 
HETATM 25 C C2 SAM . . . D 2 20.99 3.754 25.35 1 49.79 ? C2 SAM 601 A 1 
HETATM 26 N N3 SAM . . . D 2 20.141 3.587 24.321 1 43.58 ? N3 SAM 601 A 1 
HETATM 27 C C4 SAM . . . D 2 19.476 4.642 23.792 1 49.94 ? C4 SAM 601 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#