data_5WZ2 # _model_server_result.job_id MbBisscO3Ylikd3BZ6N3Rg _model_server_result.datetime_utc '2024-11-27 03:40:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wz2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":602}' # _entry.id 5WZ2 # _exptl.entry_id 5WZ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 787.441 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description "P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.1 _cell.angle_gamma 90 _cell.entry_id 5WZ2 _cell.length_a 75.131 _cell.length_b 78.274 _cell.length_c 136.38 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WZ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,J 1 1 B,F,G,K 2 1 C,H,I,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N # _chem_comp.formula 'C21 H30 N10 O17 P3 1' _chem_comp.formula_weight 787.441 _chem_comp.id GTA _chem_comp.mon_nstd_flag . _chem_comp.name "P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 7-METHYL-GPPPA # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C2 GTA sing 129 n n N2 HN21 GTA sing 130 n n N2 HN22 GTA sing 131 n n O6 C6 GTA doub 132 n n C6 C5 GTA sing 133 n n C6 N1 GTA sing 134 n n C5 N7 GTA sing 135 n y C5 C4 GTA doub 136 n y N7 C7 GTA sing 137 n n N7 C8 GTA doub 138 n y C7 H71 GTA sing 139 n n C7 H72 GTA sing 140 n n C7 H73 GTA sing 141 n n C8 N9 GTA sing 142 n y C8 H8 GTA sing 143 n n N9 C4 GTA sing 144 n y N9 C1A GTA sing 145 n n C4 N3 GTA sing 146 n n N3 C2 GTA doub 147 n n C2 N1 GTA sing 148 n n N1 HN1 GTA sing 149 n n O3A C3A GTA sing 150 n n O3A HO3A GTA sing 151 n n C1A C2A GTA sing 152 n n C1A O4A GTA sing 153 n n C1A H1A GTA sing 154 n n C2A C3A GTA sing 155 n n C2A O2A GTA sing 156 n n C2A H2A GTA sing 157 n n C3A C4A GTA sing 158 n n C3A H3A GTA sing 159 n n C4A C5A GTA sing 160 n n C4A O4A GTA sing 161 n n C4A H4A GTA sing 162 n n C5A O15 GTA sing 163 n n C5A H5A1 GTA sing 164 n n C5A H5A2 GTA sing 165 n n O2A HO2A GTA sing 166 n n P1 O11 GTA doub 167 n n P1 O12 GTA sing 168 n n P1 O13 GTA sing 169 n n P1 O15 GTA sing 170 n n O12 H122 GTA sing 171 n n O13 P2 GTA sing 172 n n P2 O22 GTA sing 173 n n P2 O21 GTA doub 174 n n P2 O23 GTA sing 175 n n O22 H222 GTA sing 176 n n O23 P3 GTA sing 177 n n P3 O32 GTA sing 178 n n P3 O31 GTA doub 179 n n P3 O33 GTA sing 180 n n O32 H322 GTA sing 181 n n O33 C5B GTA sing 182 n n C5B C4B GTA sing 183 n n C5B H5B1 GTA sing 184 n n C5B H5B2 GTA sing 185 n n C4B O4B GTA sing 186 n n C4B C3B GTA sing 187 n n C4B H4B GTA sing 188 n n O4B C1B GTA sing 189 n n C3B O3B GTA sing 190 n n C3B C2B GTA sing 191 n n C3B H3B GTA sing 192 n n O3B HO3B GTA sing 193 n n C2B O2B GTA sing 194 n n C2B C1B GTA sing 195 n n C2B H2B GTA sing 196 n n O2B HO2B GTA sing 197 n n C1B N9C GTA sing 198 n n C1B H1B GTA sing 199 n n N9C C8C GTA sing 200 n y N9C C4C GTA sing 201 n y C8C N7C GTA doub 202 n y C8C H8C GTA sing 203 n n N7C C5C GTA sing 204 n y C5C C6C GTA doub 205 n y C5C C4C GTA sing 206 n y C6C N6C GTA sing 207 n n C6C N1C GTA sing 208 n y N6C HN61 GTA sing 209 n n N6C HN62 GTA sing 210 n n N1C C2C GTA doub 211 n y C2C N3C GTA sing 212 n y C2C H2C GTA sing 213 n n N3C C4C GTA doub 214 n y # _atom_sites.entry_id 5WZ2 _atom_sites.fract_transf_matrix[1][1] 0.01331 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000022 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012776 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007332 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SAM A 1 601 601 SAM SAM . E 3 GTA A 1 602 606 GTA GTA . F 2 SAM B 1 601 601 SAM SAM . G 3 GTA B 1 602 606 GTA GTA . H 2 SAM C 1 601 601 SAM SAM . I 3 GTA C 1 602 606 GTA GTA . J 4 HOH A 1 701 55 HOH HOH . J 4 HOH A 2 702 65 HOH HOH . J 4 HOH A 3 703 10 HOH HOH . J 4 HOH A 4 704 42 HOH HOH . J 4 HOH A 5 705 2 HOH HOH . J 4 HOH A 6 706 22 HOH HOH . J 4 HOH A 7 707 4 HOH HOH . J 4 HOH A 8 708 69 HOH HOH . J 4 HOH A 9 709 29 HOH HOH . J 4 HOH A 10 710 45 HOH HOH . J 4 HOH A 11 711 8 HOH HOH . J 4 HOH A 12 712 59 HOH HOH . J 4 HOH A 13 713 53 HOH HOH . J 4 HOH A 14 714 40 HOH HOH . J 4 HOH A 15 715 27 HOH HOH . J 4 HOH A 16 716 70 HOH HOH . J 4 HOH A 17 717 34 HOH HOH . J 4 HOH A 18 718 16 HOH HOH . J 4 HOH A 19 719 54 HOH HOH . J 4 HOH A 20 720 49 HOH HOH . J 4 HOH A 21 721 32 HOH HOH . J 4 HOH A 22 722 57 HOH HOH . J 4 HOH A 23 723 1 HOH HOH . J 4 HOH A 24 724 38 HOH HOH . J 4 HOH A 25 725 64 HOH HOH . J 4 HOH A 26 726 20 HOH HOH . J 4 HOH A 27 727 79 HOH HOH . J 4 HOH A 28 728 84 HOH HOH . J 4 HOH A 29 729 30 HOH HOH . J 4 HOH A 30 730 89 HOH HOH . J 4 HOH A 31 731 6 HOH HOH . J 4 HOH A 32 732 77 HOH HOH . J 4 HOH A 33 733 13 HOH HOH . J 4 HOH A 34 734 47 HOH HOH . J 4 HOH A 35 735 46 HOH HOH . J 4 HOH A 36 736 44 HOH HOH . J 4 HOH A 37 737 63 HOH HOH . J 4 HOH A 38 738 24 HOH HOH . J 4 HOH A 39 739 78 HOH HOH . J 4 HOH A 40 740 17 HOH HOH . J 4 HOH A 41 741 88 HOH HOH . J 4 HOH A 42 742 68 HOH HOH . J 4 HOH A 43 743 67 HOH HOH . J 4 HOH A 44 744 7 HOH HOH . K 4 HOH B 1 701 83 HOH HOH . K 4 HOH B 2 702 5 HOH HOH . K 4 HOH B 3 703 3 HOH HOH . K 4 HOH B 4 704 37 HOH HOH . K 4 HOH B 5 705 85 HOH HOH . K 4 HOH B 6 706 21 HOH HOH . K 4 HOH B 7 707 86 HOH HOH . K 4 HOH B 8 708 52 HOH HOH . K 4 HOH B 9 709 50 HOH HOH . K 4 HOH B 10 710 23 HOH HOH . K 4 HOH B 11 711 58 HOH HOH . K 4 HOH B 12 712 90 HOH HOH . K 4 HOH B 13 713 14 HOH HOH . K 4 HOH B 14 714 75 HOH HOH . K 4 HOH B 15 715 71 HOH HOH . K 4 HOH B 16 716 25 HOH HOH . K 4 HOH B 17 717 51 HOH HOH . K 4 HOH B 18 718 15 HOH HOH . K 4 HOH B 19 719 41 HOH HOH . K 4 HOH B 20 720 36 HOH HOH . K 4 HOH B 21 721 72 HOH HOH . K 4 HOH B 22 722 81 HOH HOH . K 4 HOH B 23 723 19 HOH HOH . K 4 HOH B 24 724 48 HOH HOH . K 4 HOH B 25 725 80 HOH HOH . K 4 HOH B 26 726 28 HOH HOH . K 4 HOH B 27 727 60 HOH HOH . K 4 HOH B 28 728 73 HOH HOH . K 4 HOH B 29 729 87 HOH HOH . K 4 HOH B 30 730 74 HOH HOH . L 4 HOH C 1 701 31 HOH HOH . L 4 HOH C 2 702 26 HOH HOH . L 4 HOH C 3 703 18 HOH HOH . L 4 HOH C 4 704 43 HOH HOH . L 4 HOH C 5 705 11 HOH HOH . L 4 HOH C 6 706 9 HOH HOH . L 4 HOH C 7 707 61 HOH HOH . L 4 HOH C 8 708 39 HOH HOH . L 4 HOH C 9 709 66 HOH HOH . L 4 HOH C 10 710 76 HOH HOH . L 4 HOH C 11 711 33 HOH HOH . L 4 HOH C 12 712 35 HOH HOH . L 4 HOH C 13 713 56 HOH HOH . L 4 HOH C 14 714 82 HOH HOH . L 4 HOH C 15 715 12 HOH HOH . L 4 HOH C 16 716 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 GTA . . . G 3 8.027 23.19 36.092 1 56.14 ? N2 GTA 602 B 1 HETATM 2 O O6 GTA . . . G 3 5.757 26.791 34.385 1 61.75 ? O6 GTA 602 B 1 HETATM 3 C C6 GTA . . . G 3 6.843 26.199 34.563 1 62.81 ? C6 GTA 602 B 1 HETATM 4 C C5 GTA . . . G 3 8.132 26.737 34.072 1 61.42 ? C5 GTA 602 B 1 HETATM 5 N N7 GTA . . . G 3 8.431 27.846 33.401 1 58.87 ? N7 GTA 602 B 1 HETATM 6 C C7 GTA . . . G 3 7.491 28.902 32.944 1 56.94 ? C7 GTA 602 B 1 HETATM 7 C C8 GTA . . . G 3 9.77 27.823 33.218 1 60.31 ? C8 GTA 602 B 1 HETATM 8 N N9 GTA . . . G 3 10.333 26.72 33.764 1 56.55 ? N9 GTA 602 B 1 HETATM 9 C C4 GTA . . . G 3 9.363 25.989 34.313 1 59.58 ? C4 GTA 602 B 1 HETATM 10 N N3 GTA . . . G 3 9.271 24.821 34.989 1 57.53 ? N3 GTA 602 B 1 HETATM 11 C C2 GTA . . . G 3 8.063 24.367 35.421 1 60.41 ? C2 GTA 602 B 1 HETATM 12 N N1 GTA . . . G 3 6.902 25.029 35.215 1 64.02 ? N1 GTA 602 B 1 HETATM 13 O O3A GTA . . . G 3 14.167 26.284 31.082 1 51.35 ? O3A GTA 602 B 1 HETATM 14 C C1A GTA . . . G 3 11.775 26.367 33.757 1 55.81 ? C1A GTA 602 B 1 HETATM 15 C C2A GTA . . . G 3 12.186 25.817 32.401 1 54.34 ? C2A GTA 602 B 1 HETATM 16 C C3A GTA . . . G 3 13.079 26.874 31.796 1 56.93 ? C3A GTA 602 B 1 HETATM 17 C C4A GTA . . . G 3 13.581 27.644 33.002 1 57.36 ? C4A GTA 602 B 1 HETATM 18 C C5A GTA . . . G 3 13.867 29.097 32.673 1 58.68 ? C5A GTA 602 B 1 HETATM 19 O O4A GTA . . . G 3 12.554 27.544 33.989 1 56.02 ? O4A GTA 602 B 1 HETATM 20 O O2A GTA . . . G 3 12.954 24.627 32.59 1 50.02 ? O2A GTA 602 B 1 HETATM 21 P P1 GTA . . . G 3 12.925 31.499 32.956 1 77.83 ? P1 GTA 602 B 1 HETATM 22 O O11 GTA . . . G 3 14.278 31.953 33.455 1 77.38 ? O11 GTA 602 B 1 HETATM 23 O O12 GTA . . . G 3 12.551 31.738 31.513 1 66.4 ? O12 GTA 602 B 1 HETATM 24 O O13 GTA . . . G 3 11.799 32.111 33.936 1 70.95 ? O13 GTA 602 B 1 HETATM 25 O O15 GTA . . . G 3 12.836 29.917 33.211 1 61.8 ? O15 GTA 602 B 1 HETATM 26 P P2 GTA . . . G 3 10.283 32.245 33.414 1 95.88 ? P2 GTA 602 B 1 HETATM 27 O O22 GTA . . . G 3 9.909 30.877 32.901 1 82.46 ? O22 GTA 602 B 1 HETATM 28 O O21 GTA . . . G 3 9.448 32.883 34.501 1 70.24 ? O21 GTA 602 B 1 HETATM 29 O O23 GTA . . . G 3 10.474 33.316 32.218 1 92.83 ? O23 GTA 602 B 1 HETATM 30 P P3 GTA . . . G 3 9.887 33.17 30.719 1 82.69 ? P3 GTA 602 B 1 HETATM 31 O O32 GTA . . . G 3 10.902 33.788 29.787 1 83.2 ? O32 GTA 602 B 1 HETATM 32 O O31 GTA . . . G 3 8.453 33.642 30.701 1 86.08 ? O31 GTA 602 B 1 HETATM 33 O O33 GTA . . . G 3 9.915 31.584 30.446 1 82.23 ? O33 GTA 602 B 1 HETATM 34 C C5B GTA . . . G 3 9.705 30.995 29.165 1 86.05 ? C5B GTA 602 B 1 HETATM 35 C C4B GTA . . . G 3 10.308 29.594 29.214 1 79.98 ? C4B GTA 602 B 1 HETATM 36 O O4B GTA . . . G 3 9.604 28.773 30.152 1 80.38 ? O4B GTA 602 B 1 HETATM 37 C C3B GTA . . . G 3 10.269 28.871 27.875 1 81.22 ? C3B GTA 602 B 1 HETATM 38 O O3B GTA . . . G 3 11.607 28.624 27.435 1 79.03 ? O3B GTA 602 B 1 HETATM 39 C C2B GTA . . . G 3 9.569 27.552 28.142 1 80.99 ? C2B GTA 602 B 1 HETATM 40 O O2B GTA . . . G 3 10.299 26.467 27.563 1 80.9 ? O2B GTA 602 B 1 HETATM 41 C C1B GTA . . . G 3 9.572 27.432 29.656 1 76.03 ? C1B GTA 602 B 1 HETATM 42 N N9C GTA . . . G 3 8.396 26.676 30.162 1 74.74 ? N9C GTA 602 B 1 HETATM 43 C C8C GTA . . . G 3 7.111 27.081 30.17 1 70.52 ? C8C GTA 602 B 1 HETATM 44 N N7C GTA . . . G 3 6.304 26.13 30.712 1 75.61 ? N7C GTA 602 B 1 HETATM 45 C C5C GTA . . . G 3 7.081 25.085 31.056 1 70.32 ? C5C GTA 602 B 1 HETATM 46 C C6C GTA . . . G 3 6.877 23.751 31.673 1 72.95 ? C6C GTA 602 B 1 HETATM 47 N N6C GTA . . . G 3 5.643 23.329 32.042 1 74.68 ? N6C GTA 602 B 1 HETATM 48 N N1C GTA . . . G 3 7.966 22.969 31.855 1 74.31 ? N1C GTA 602 B 1 HETATM 49 C C2C GTA . . . G 3 9.198 23.373 31.494 1 66.91 ? C2C GTA 602 B 1 HETATM 50 N N3C GTA . . . G 3 9.454 24.567 30.931 1 68.68 ? N3C GTA 602 B 1 HETATM 51 C C4C GTA . . . G 3 8.457 25.451 30.689 1 70.59 ? C4C GTA 602 B 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 51 #