data_5X02 # _model_server_result.job_id 14PWsdM3PYuA-QHneEhdqQ _model_server_result.datetime_utc '2024-11-23 00:06:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x02 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 5X02 # _exptl.entry_id 5X02 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 530.664 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(2S)-1-[5-[2-[(4-cyanophenyl)amino]-4-(propylamino)pyrimidin-5-yl]pent-4-ynylamino]-1-oxidanylidene-propan-2-yl]-4-(dimethylamino)-N-methyl-but-2-enamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5X02 _cell.length_a 81.993 _cell.length_b 81.993 _cell.length_c 143.558 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X02 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 135 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 695 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C23 _struct_conn.ptnr2_label_comp_id F6M _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id F6M _struct_conn.ptnr2_auth_seq_id 1001 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.615 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C29 H38 N8 O2' _chem_comp.formula_weight 530.664 _chem_comp.id F6M _chem_comp.mon_nstd_flag . _chem_comp.name N-[(2S)-1-[5-[2-[(4-cyanophenyl)amino]-4-(propylamino)pyrimidin-5-yl]pent-4-ynylamino]-1-oxidanylidene-propan-2-yl]-4-(dimethylamino)-N-methyl-but-2-enamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C31 F6M sing 83 n n C1 C2 F6M sing 84 n n N3 C11 F6M trip 85 n n C2 N8 F6M sing 86 n n C11 C8 F6M sing 87 n n C9 C8 F6M doub 88 n y C9 C10 F6M sing 89 n y N8 C3 F6M sing 90 n n C8 C7 F6M sing 91 n y C10 C5 F6M doub 92 n y C3 N1 F6M doub 93 n y C3 C13 F6M sing 94 n y N1 C4 F6M sing 95 n y C7 C6 F6M doub 96 n y C16 C15 F6M sing 97 n n C16 C17 F6M sing 98 n n C15 C14 F6M trip 99 n n C5 C6 F6M sing 100 n y C5 N2 F6M sing 101 n n C14 C13 F6M sing 102 n n C13 C12 F6M doub 103 n y C4 N2 F6M sing 104 n n C4 N4 F6M doub 105 n y C17 C18 F6M sing 106 n n C18 N5 F6M sing 107 n n C12 N4 F6M sing 108 n y N5 C19 F6M sing 109 n n O1 C19 F6M doub 110 n n C19 C20 F6M sing 111 n n C27 N6 F6M sing 112 n n C28 C20 F6M sing 113 n n C20 N6 F6M sing 114 n n N6 C21 F6M sing 115 n n C21 C22 F6M sing 116 n n C21 O2 F6M doub 117 n n C22 C23 F6M doub 118 e n C23 C24 F6M sing 119 n n C24 N7 F6M sing 120 n n N7 C26 F6M sing 121 n n N7 C25 F6M sing 122 n n C9 H1 F6M sing 123 n n C10 H2 F6M sing 124 n n C7 H3 F6M sing 125 n n C6 H4 F6M sing 126 n n N2 H5 F6M sing 127 n n N8 H6 F6M sing 128 n n C2 H7 F6M sing 129 n n C2 H8 F6M sing 130 n n C1 H9 F6M sing 131 n n C1 H10 F6M sing 132 n n C31 H11 F6M sing 133 n n C31 H12 F6M sing 134 n n C31 H13 F6M sing 135 n n C12 H14 F6M sing 136 n n C16 H15 F6M sing 137 n n C16 H16 F6M sing 138 n n C17 H17 F6M sing 139 n n C17 H18 F6M sing 140 n n C18 H19 F6M sing 141 n n C18 H20 F6M sing 142 n n N5 H21 F6M sing 143 n n C20 H22 F6M sing 144 n n C28 H23 F6M sing 145 n n C28 H24 F6M sing 146 n n C28 H25 F6M sing 147 n n C27 H26 F6M sing 148 n n C27 H27 F6M sing 149 n n C27 H28 F6M sing 150 n n C22 H29 F6M sing 151 n n C23 H31 F6M sing 152 n n C24 H33 F6M sing 153 n n C24 H34 F6M sing 154 n n C25 H36 F6M sing 155 n n C25 H37 F6M sing 156 n n C25 H38 F6M sing 157 n n C26 H39 F6M sing 158 n n C26 H40 F6M sing 159 n n C26 H41 F6M sing 160 n n # _atom_sites.entry_id 5X02 _atom_sites.fract_transf_matrix[1][1] 0.012196 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012196 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 F6M A 1 1001 1 F6M F6m . C 3 SO4 A 1 1002 1 SO4 SO4 . D 3 SO4 A 1 1003 2 SO4 SO4 . E 3 SO4 A 1 1004 3 SO4 SO4 . F 4 HOH A 1 1101 9 HOH HOH . F 4 HOH A 2 1102 5 HOH HOH . F 4 HOH A 3 1103 21 HOH HOH . F 4 HOH A 4 1104 28 HOH HOH . F 4 HOH A 5 1105 20 HOH HOH . F 4 HOH A 6 1106 16 HOH HOH . F 4 HOH A 7 1107 4 HOH HOH . F 4 HOH A 8 1108 8 HOH HOH . F 4 HOH A 9 1109 41 HOH HOH . F 4 HOH A 10 1110 87 HOH HOH . F 4 HOH A 11 1111 31 HOH HOH . F 4 HOH A 12 1112 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 F6M . . . B 2 -28.826 -1.492 -9.685 1 75.3 ? N3 F6M 1001 A 1 HETATM 2 C C11 F6M . . . B 2 -28.729 -0.56 -9.003 1 76.8 ? C11 F6M 1001 A 1 HETATM 3 C C8 F6M . . . B 2 -28.673 0.458 -8.221 1 77.83 ? C8 F6M 1001 A 1 HETATM 4 C C9 F6M . . . B 2 -28.793 1.754 -8.752 1 80.65 ? C9 F6M 1001 A 1 HETATM 5 C C10 F6M . . . B 2 -28.671 2.841 -7.907 1 78.73 ? C10 F6M 1001 A 1 HETATM 6 C C7 F6M . . . B 2 -28.403 0.297 -6.889 1 72.1 ? C7 F6M 1001 A 1 HETATM 7 C C6 F6M . . . B 2 -28.281 1.397 -6.043 1 72.54 ? C6 F6M 1001 A 1 HETATM 8 C C5 F6M . . . B 2 -28.417 2.688 -6.548 1 78.98 ? C5 F6M 1001 A 1 HETATM 9 N N2 F6M . . . B 2 -28.287 3.734 -5.681 1 72.11 ? N2 F6M 1001 A 1 HETATM 10 C C4 F6M . . . B 2 -28.451 5.062 -5.923 1 76.79 ? C4 F6M 1001 A 1 HETATM 11 N N1 F6M . . . B 2 -28.768 5.547 -7.152 1 83.06 ? N1 F6M 1001 A 1 HETATM 12 C C3 F6M . . . B 2 -28.925 6.87 -7.364 1 86.54 ? C3 F6M 1001 A 1 HETATM 13 N N8 F6M . . . B 2 -29.244 7.339 -8.593 1 86.92 ? N8 F6M 1001 A 1 HETATM 14 C C2 F6M . . . B 2 -29.444 6.402 -9.676 1 84.54 ? C2 F6M 1001 A 1 HETATM 15 C C1 F6M . . . B 2 -28.59 6.762 -10.882 1 93.06 ? C1 F6M 1001 A 1 HETATM 16 C C31 F6M . . . B 2 -27.164 7.042 -10.462 1 86.97 ? C31 F6M 1001 A 1 HETATM 17 N N4 F6M . . . B 2 -28.287 5.907 -4.879 1 80.84 ? N4 F6M 1001 A 1 HETATM 18 C C12 F6M . . . B 2 -28.424 7.226 -5.003 1 81.52 ? C12 F6M 1001 A 1 HETATM 19 C C13 F6M . . . B 2 -28.733 7.791 -6.205 1 89.81 ? C13 F6M 1001 A 1 HETATM 20 C C14 F6M . . . B 2 -28.899 9.051 -6.387 1 88.26 ? C14 F6M 1001 A 1 HETATM 21 C C15 F6M . . . B 2 -28.972 10.216 -6.548 1 87.27 ? C15 F6M 1001 A 1 HETATM 22 C C16 F6M . . . B 2 -29.235 11.646 -6.764 1 88.92 ? C16 F6M 1001 A 1 HETATM 23 C C17 F6M . . . B 2 -29.547 12.28 -5.424 1 90.87 ? C17 F6M 1001 A 1 HETATM 24 C C18 F6M . . . B 2 -28.384 13.139 -4.944 1 94.35 ? C18 F6M 1001 A 1 HETATM 25 N N5 F6M . . . B 2 -28.492 13.425 -3.521 1 102.52 ? N5 F6M 1001 A 1 HETATM 26 C C19 F6M . . . B 2 -29.242 14.433 -3.056 1 102.04 ? C19 F6M 1001 A 1 HETATM 27 O O1 F6M . . . B 2 -30.13 14.951 -3.743 1 102.46 ? O1 F6M 1001 A 1 HETATM 28 C C20 F6M . . . B 2 -28.96 14.936 -1.662 1 99.29 ? C20 F6M 1001 A 1 HETATM 29 C C28 F6M . . . B 2 -29.327 16.417 -1.614 1 106.81 ? C28 F6M 1001 A 1 HETATM 30 N N6 F6M . . . B 2 -27.593 14.769 -1.243 1 93.17 ? N6 F6M 1001 A 1 HETATM 31 C C27 F6M . . . B 2 -26.571 15.497 -1.936 1 92.51 ? C27 F6M 1001 A 1 HETATM 32 C C21 F6M . . . B 2 -27.348 13.98 -0.202 1 100.35 ? C21 F6M 1001 A 1 HETATM 33 O O2 F6M . . . B 2 -28.242 13.409 0.427 1 102.17 ? O2 F6M 1001 A 1 HETATM 34 C C22 F6M . . . B 2 -25.888 13.819 0.209 1 105.08 ? C22 F6M 1001 A 1 HETATM 35 C C23 F6M . . . B 2 -25.683 12.63 1.176 1 108.65 ? C23 F6M 1001 A 1 HETATM 36 C C24 F6M . . . B 2 -24.627 12.986 2.239 1 110.02 ? C24 F6M 1001 A 1 HETATM 37 N N7 F6M . . . B 2 -25.375 13.336 3.442 1 115.04 ? N7 F6M 1001 A 1 HETATM 38 C C25 F6M . . . B 2 -26.133 12.301 4.125 1 114.35 ? C25 F6M 1001 A 1 HETATM 39 C C26 F6M . . . B 2 -25.305 14.677 3.993 1 107.61 ? C26 F6M 1001 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 39 #