data_5X03
#
_model_server_result.job_id            t1z2Z0xTvNhl2qs7Jrxofw 
_model_server_result.datetime_utc      '2024-11-14 21:05:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5x03 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    5X03 
#
_exptl.entry_id    5X03 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              103.12 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'GAMMA-AMINO-BUTANOIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5X03 
_cell.length_a            118.497 
_cell.length_b            118.497 
_cell.length_c            75.862 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5X03 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C4A PLP . A PLP 501 1_555 D N ABU . A ABU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.154 ? 
covale ? covale2 B NZ LYS 205 B LYS 312 1_555 E C4A PLP . B PLP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? 
#
_chem_comp.formula           'C4 H9 N O2' 
_chem_comp.formula_weight    103.12 
_chem_comp.id                ABU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'GAMMA-AMINO-BUTANOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'GAMMA(AMINO)-BUTYRIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CD ABU sing 1 n n 
N H ABU sing 2 n n 
N H2 ABU sing 3 n n 
CD CB ABU sing 4 n n 
CD HA1 ABU sing 5 n n 
CD HA2 ABU sing 6 n n 
CB CG ABU sing 7 n n 
CB HB1 ABU sing 8 n n 
CB HB2 ABU sing 9 n n 
CG C ABU sing 10 n n 
CG HG1 ABU sing 11 n n 
CG HG2 ABU sing 12 n n 
C O ABU doub 13 n n 
C OXT ABU sing 14 n n 
OXT HXT ABU sing 15 n n 
#
_atom_sites.entry_id                     5X03 
_atom_sites.fract_transf_matrix[1][1]    0.008439 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008439 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013182 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PLP A 1 501 1 PLP PLP . 
D 4 ABU A 1 502 1 ABU ABU . 
E 3 PLP B 1 501 2 PLP PLP . 
F 5 HOH A 1 601 202 HOH HOH . 
F 5 HOH A 2 602 8 HOH HOH . 
F 5 HOH A 3 603 65 HOH HOH . 
F 5 HOH A 4 604 208 HOH HOH . 
F 5 HOH A 5 605 205 HOH HOH . 
F 5 HOH A 6 606 3 HOH HOH . 
F 5 HOH A 7 607 182 HOH HOH . 
F 5 HOH A 8 608 174 HOH HOH . 
F 5 HOH A 9 609 104 HOH HOH . 
F 5 HOH A 10 610 204 HOH HOH . 
F 5 HOH A 11 611 82 HOH HOH . 
F 5 HOH A 12 612 36 HOH HOH . 
F 5 HOH A 13 613 33 HOH HOH . 
F 5 HOH A 14 614 77 HOH HOH . 
F 5 HOH A 15 615 48 HOH HOH . 
F 5 HOH A 16 616 188 HOH HOH . 
F 5 HOH A 17 617 156 HOH HOH . 
F 5 HOH A 18 618 123 HOH HOH . 
F 5 HOH A 19 619 196 HOH HOH . 
F 5 HOH A 20 620 49 HOH HOH . 
F 5 HOH A 21 621 75 HOH HOH . 
F 5 HOH A 22 622 7 HOH HOH . 
F 5 HOH A 23 623 130 HOH HOH . 
F 5 HOH A 24 624 228 HOH HOH . 
F 5 HOH A 25 625 134 HOH HOH . 
F 5 HOH A 26 626 108 HOH HOH . 
F 5 HOH A 27 627 79 HOH HOH . 
F 5 HOH A 28 628 110 HOH HOH . 
F 5 HOH A 29 629 47 HOH HOH . 
F 5 HOH A 30 630 97 HOH HOH . 
F 5 HOH A 31 631 68 HOH HOH . 
F 5 HOH A 32 632 87 HOH HOH . 
F 5 HOH A 33 633 72 HOH HOH . 
F 5 HOH A 34 634 20 HOH HOH . 
F 5 HOH A 35 635 119 HOH HOH . 
F 5 HOH A 36 636 198 HOH HOH . 
F 5 HOH A 37 637 51 HOH HOH . 
F 5 HOH A 38 638 84 HOH HOH . 
F 5 HOH A 39 639 226 HOH HOH . 
F 5 HOH A 40 640 11 HOH HOH . 
F 5 HOH A 41 641 6 HOH HOH . 
F 5 HOH A 42 642 4 HOH HOH . 
F 5 HOH A 43 643 57 HOH HOH . 
F 5 HOH A 44 644 116 HOH HOH . 
F 5 HOH A 45 645 128 HOH HOH . 
F 5 HOH A 46 646 14 HOH HOH . 
F 5 HOH A 47 647 81 HOH HOH . 
F 5 HOH A 48 648 115 HOH HOH . 
F 5 HOH A 49 649 26 HOH HOH . 
F 5 HOH A 50 650 95 HOH HOH . 
F 5 HOH A 51 651 60 HOH HOH . 
F 5 HOH A 52 652 164 HOH HOH . 
F 5 HOH A 53 653 5 HOH HOH . 
F 5 HOH A 54 654 147 HOH HOH . 
F 5 HOH A 55 655 35 HOH HOH . 
F 5 HOH A 56 656 138 HOH HOH . 
F 5 HOH A 57 657 29 HOH HOH . 
F 5 HOH A 58 658 10 HOH HOH . 
F 5 HOH A 59 659 43 HOH HOH . 
F 5 HOH A 60 660 192 HOH HOH . 
F 5 HOH A 61 661 34 HOH HOH . 
F 5 HOH A 62 662 88 HOH HOH . 
F 5 HOH A 63 663 193 HOH HOH . 
F 5 HOH A 64 664 114 HOH HOH . 
F 5 HOH A 65 665 2 HOH HOH . 
F 5 HOH A 66 666 42 HOH HOH . 
F 5 HOH A 67 667 90 HOH HOH . 
F 5 HOH A 68 668 22 HOH HOH . 
F 5 HOH A 69 669 187 HOH HOH . 
F 5 HOH A 70 670 64 HOH HOH . 
F 5 HOH A 71 671 139 HOH HOH . 
F 5 HOH A 72 672 169 HOH HOH . 
F 5 HOH A 73 673 67 HOH HOH . 
F 5 HOH A 74 674 168 HOH HOH . 
F 5 HOH A 75 675 24 HOH HOH . 
F 5 HOH A 76 676 189 HOH HOH . 
F 5 HOH A 77 677 99 HOH HOH . 
F 5 HOH A 78 678 59 HOH HOH . 
F 5 HOH A 79 679 106 HOH HOH . 
F 5 HOH A 80 680 45 HOH HOH . 
F 5 HOH A 81 681 15 HOH HOH . 
F 5 HOH A 82 682 236 HOH HOH . 
F 5 HOH A 83 683 91 HOH HOH . 
F 5 HOH A 84 684 111 HOH HOH . 
F 5 HOH A 85 685 167 HOH HOH . 
F 5 HOH A 86 686 16 HOH HOH . 
F 5 HOH A 87 687 126 HOH HOH . 
F 5 HOH A 88 688 53 HOH HOH . 
F 5 HOH A 89 689 125 HOH HOH . 
F 5 HOH A 90 690 109 HOH HOH . 
F 5 HOH A 91 691 190 HOH HOH . 
F 5 HOH A 92 692 136 HOH HOH . 
F 5 HOH A 93 693 235 HOH HOH . 
F 5 HOH A 94 694 201 HOH HOH . 
F 5 HOH A 95 695 154 HOH HOH . 
F 5 HOH A 96 696 145 HOH HOH . 
F 5 HOH A 97 697 177 HOH HOH . 
F 5 HOH A 98 698 101 HOH HOH . 
F 5 HOH A 99 699 71 HOH HOH . 
F 5 HOH A 100 700 227 HOH HOH . 
F 5 HOH A 101 701 158 HOH HOH . 
F 5 HOH A 102 702 38 HOH HOH . 
F 5 HOH A 103 703 237 HOH HOH . 
F 5 HOH A 104 704 179 HOH HOH . 
F 5 HOH A 105 705 160 HOH HOH . 
F 5 HOH A 106 706 13 HOH HOH . 
F 5 HOH A 107 707 218 HOH HOH . 
F 5 HOH A 108 708 89 HOH HOH . 
F 5 HOH A 109 709 98 HOH HOH . 
F 5 HOH A 110 710 206 HOH HOH . 
F 5 HOH A 111 711 74 HOH HOH . 
F 5 HOH A 112 712 241 HOH HOH . 
F 5 HOH A 113 713 28 HOH HOH . 
F 5 HOH A 114 714 131 HOH HOH . 
F 5 HOH A 115 715 63 HOH HOH . 
F 5 HOH A 116 716 9 HOH HOH . 
F 5 HOH A 117 717 152 HOH HOH . 
F 5 HOH A 118 718 186 HOH HOH . 
F 5 HOH A 119 719 159 HOH HOH . 
F 5 HOH A 120 720 240 HOH HOH . 
F 5 HOH A 121 721 194 HOH HOH . 
F 5 HOH A 122 722 191 HOH HOH . 
F 5 HOH A 123 723 157 HOH HOH . 
F 5 HOH A 124 724 185 HOH HOH . 
F 5 HOH A 125 725 200 HOH HOH . 
F 5 HOH A 126 726 238 HOH HOH . 
F 5 HOH A 127 727 120 HOH HOH . 
F 5 HOH A 128 728 239 HOH HOH . 
F 5 HOH A 129 729 121 HOH HOH . 
F 5 HOH A 130 730 170 HOH HOH . 
F 5 HOH A 131 731 102 HOH HOH . 
F 5 HOH A 132 732 242 HOH HOH . 
F 5 HOH A 133 733 220 HOH HOH . 
F 5 HOH A 134 734 173 HOH HOH . 
F 5 HOH A 135 735 112 HOH HOH . 
F 5 HOH A 136 736 217 HOH HOH . 
F 5 HOH A 137 737 184 HOH HOH . 
F 5 HOH A 138 738 207 HOH HOH . 
F 5 HOH A 139 739 209 HOH HOH . 
F 5 HOH A 140 740 195 HOH HOH . 
G 5 HOH B 1 601 183 HOH HOH . 
G 5 HOH B 2 602 171 HOH HOH . 
G 5 HOH B 3 603 76 HOH HOH . 
G 5 HOH B 4 604 203 HOH HOH . 
G 5 HOH B 5 605 39 HOH HOH . 
G 5 HOH B 6 606 61 HOH HOH . 
G 5 HOH B 7 607 1 HOH HOH . 
G 5 HOH B 8 608 27 HOH HOH . 
G 5 HOH B 9 609 175 HOH HOH . 
G 5 HOH B 10 610 153 HOH HOH . 
G 5 HOH B 11 611 166 HOH HOH . 
G 5 HOH B 12 612 244 HOH HOH . 
G 5 HOH B 13 613 69 HOH HOH . 
G 5 HOH B 14 614 215 HOH HOH . 
G 5 HOH B 15 615 52 HOH HOH . 
G 5 HOH B 16 616 80 HOH HOH . 
G 5 HOH B 17 617 94 HOH HOH . 
G 5 HOH B 18 618 58 HOH HOH . 
G 5 HOH B 19 619 172 HOH HOH . 
G 5 HOH B 20 620 19 HOH HOH . 
G 5 HOH B 21 621 105 HOH HOH . 
G 5 HOH B 22 622 30 HOH HOH . 
G 5 HOH B 23 623 78 HOH HOH . 
G 5 HOH B 24 624 107 HOH HOH . 
G 5 HOH B 25 625 46 HOH HOH . 
G 5 HOH B 26 626 224 HOH HOH . 
G 5 HOH B 27 627 143 HOH HOH . 
G 5 HOH B 28 628 176 HOH HOH . 
G 5 HOH B 29 629 162 HOH HOH . 
G 5 HOH B 30 630 17 HOH HOH . 
G 5 HOH B 31 631 234 HOH HOH . 
G 5 HOH B 32 632 103 HOH HOH . 
G 5 HOH B 33 633 93 HOH HOH . 
G 5 HOH B 34 634 129 HOH HOH . 
G 5 HOH B 35 635 225 HOH HOH . 
G 5 HOH B 36 636 141 HOH HOH . 
G 5 HOH B 37 637 12 HOH HOH . 
G 5 HOH B 38 638 197 HOH HOH . 
G 5 HOH B 39 639 37 HOH HOH . 
G 5 HOH B 40 640 73 HOH HOH . 
G 5 HOH B 41 641 151 HOH HOH . 
G 5 HOH B 42 642 66 HOH HOH . 
G 5 HOH B 43 643 132 HOH HOH . 
G 5 HOH B 44 644 55 HOH HOH . 
G 5 HOH B 45 645 230 HOH HOH . 
G 5 HOH B 46 646 32 HOH HOH . 
G 5 HOH B 47 647 40 HOH HOH . 
G 5 HOH B 48 648 137 HOH HOH . 
G 5 HOH B 49 649 31 HOH HOH . 
G 5 HOH B 50 650 140 HOH HOH . 
G 5 HOH B 51 651 117 HOH HOH . 
G 5 HOH B 52 652 44 HOH HOH . 
G 5 HOH B 53 653 62 HOH HOH . 
G 5 HOH B 54 654 248 HOH HOH . 
G 5 HOH B 55 655 165 HOH HOH . 
G 5 HOH B 56 656 180 HOH HOH . 
G 5 HOH B 57 657 163 HOH HOH . 
G 5 HOH B 58 658 124 HOH HOH . 
G 5 HOH B 59 659 23 HOH HOH . 
G 5 HOH B 60 660 56 HOH HOH . 
G 5 HOH B 61 661 213 HOH HOH . 
G 5 HOH B 62 662 18 HOH HOH . 
G 5 HOH B 63 663 25 HOH HOH . 
G 5 HOH B 64 664 70 HOH HOH . 
G 5 HOH B 65 665 181 HOH HOH . 
G 5 HOH B 66 666 243 HOH HOH . 
G 5 HOH B 67 667 41 HOH HOH . 
G 5 HOH B 68 668 54 HOH HOH . 
G 5 HOH B 69 669 146 HOH HOH . 
G 5 HOH B 70 670 96 HOH HOH . 
G 5 HOH B 71 671 223 HOH HOH . 
G 5 HOH B 72 672 231 HOH HOH . 
G 5 HOH B 73 673 85 HOH HOH . 
G 5 HOH B 74 674 229 HOH HOH . 
G 5 HOH B 75 675 92 HOH HOH . 
G 5 HOH B 76 676 142 HOH HOH . 
G 5 HOH B 77 677 100 HOH HOH . 
G 5 HOH B 78 678 148 HOH HOH . 
G 5 HOH B 79 679 50 HOH HOH . 
G 5 HOH B 80 680 118 HOH HOH . 
G 5 HOH B 81 681 150 HOH HOH . 
G 5 HOH B 82 682 216 HOH HOH . 
G 5 HOH B 83 683 86 HOH HOH . 
G 5 HOH B 84 684 21 HOH HOH . 
G 5 HOH B 85 685 155 HOH HOH . 
G 5 HOH B 86 686 214 HOH HOH . 
G 5 HOH B 87 687 122 HOH HOH . 
G 5 HOH B 88 688 83 HOH HOH . 
G 5 HOH B 89 689 221 HOH HOH . 
G 5 HOH B 90 690 133 HOH HOH . 
G 5 HOH B 91 691 247 HOH HOH . 
G 5 HOH B 92 692 161 HOH HOH . 
G 5 HOH B 93 693 113 HOH HOH . 
G 5 HOH B 94 694 149 HOH HOH . 
G 5 HOH B 95 695 233 HOH HOH . 
G 5 HOH B 96 696 219 HOH HOH . 
G 5 HOH B 97 697 199 HOH HOH . 
G 5 HOH B 98 698 178 HOH HOH . 
G 5 HOH B 99 699 210 HOH HOH . 
G 5 HOH B 100 700 222 HOH HOH . 
G 5 HOH B 101 701 127 HOH HOH . 
G 5 HOH B 102 702 135 HOH HOH . 
G 5 HOH B 103 703 144 HOH HOH . 
G 5 HOH B 104 704 232 HOH HOH . 
G 5 HOH B 105 705 246 HOH HOH . 
G 5 HOH B 106 706 212 HOH HOH . 
G 5 HOH B 107 707 245 HOH HOH . 
G 5 HOH B 108 708 211 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N ABU . . . D 4 -8.946 -35.329 14.515 1 37.17 ? N ABU 502 A 1 
HETATM 2 C CD ABU . . . D 4 -8.259 -35.794 15.704 1 31.65 ? CD ABU 502 A 1 
HETATM 3 C CB ABU . . . D 4 -7.447 -34.656 16.312 1 27.08 ? CB ABU 502 A 1 
HETATM 4 C CG ABU . . . D 4 -8.181 -34.033 17.492 1 22.25 ? CG ABU 502 A 1 
HETATM 5 C C ABU . . . D 4 -7.22 -33.206 18.312 1 23.34 ? C ABU 502 A 1 
HETATM 6 O O ABU . . . D 4 -6.217 -32.72 17.752 1 26.94 ? O ABU 502 A 1 
HETATM 7 O OXT ABU . . . D 4 -7.465 -33.036 19.522 1 26.23 ? OXT ABU 502 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           217 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           7 
#