data_5X0B # _model_server_result.job_id jF_SI0kz-h56T7u_iwlqNA _model_server_result.datetime_utc '2024-11-08 19:51:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x0b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5X0B # _exptl.entry_id 5X0B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5X0B _cell.length_a 40.052 _cell.length_b 69.866 _cell.length_c 87.417 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X0B _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 5X0B _atom_sites.fract_transf_matrix[1][1] 0.024968 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014313 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011439 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 301 301 AMP AMP . C 3 HOH A 1 401 73 HOH HOH . C 3 HOH A 2 402 74 HOH HOH . C 3 HOH A 3 403 100 HOH HOH . C 3 HOH A 4 404 62 HOH HOH . C 3 HOH A 5 405 35 HOH HOH . C 3 HOH A 6 406 134 HOH HOH . C 3 HOH A 7 407 57 HOH HOH . C 3 HOH A 8 408 3 HOH HOH . C 3 HOH A 9 409 31 HOH HOH . C 3 HOH A 10 410 76 HOH HOH . C 3 HOH A 11 411 63 HOH HOH . C 3 HOH A 12 412 88 HOH HOH . C 3 HOH A 13 413 77 HOH HOH . C 3 HOH A 14 414 18 HOH HOH . C 3 HOH A 15 415 37 HOH HOH . C 3 HOH A 16 416 60 HOH HOH . C 3 HOH A 17 417 89 HOH HOH . C 3 HOH A 18 418 32 HOH HOH . C 3 HOH A 19 419 81 HOH HOH . C 3 HOH A 20 420 66 HOH HOH . C 3 HOH A 21 421 86 HOH HOH . C 3 HOH A 22 422 15 HOH HOH . C 3 HOH A 23 423 49 HOH HOH . C 3 HOH A 24 424 25 HOH HOH . C 3 HOH A 25 425 51 HOH HOH . C 3 HOH A 26 426 21 HOH HOH . C 3 HOH A 27 427 83 HOH HOH . C 3 HOH A 28 428 45 HOH HOH . C 3 HOH A 29 429 103 HOH HOH . C 3 HOH A 30 430 19 HOH HOH . C 3 HOH A 31 431 106 HOH HOH . C 3 HOH A 32 432 6 HOH HOH . C 3 HOH A 33 433 90 HOH HOH . C 3 HOH A 34 434 27 HOH HOH . C 3 HOH A 35 435 44 HOH HOH . C 3 HOH A 36 436 58 HOH HOH . C 3 HOH A 37 437 20 HOH HOH . C 3 HOH A 38 438 121 HOH HOH . C 3 HOH A 39 439 69 HOH HOH . C 3 HOH A 40 440 130 HOH HOH . C 3 HOH A 41 441 10 HOH HOH . C 3 HOH A 42 442 48 HOH HOH . C 3 HOH A 43 443 119 HOH HOH . C 3 HOH A 44 444 23 HOH HOH . C 3 HOH A 45 445 17 HOH HOH . C 3 HOH A 46 446 11 HOH HOH . C 3 HOH A 47 447 47 HOH HOH . C 3 HOH A 48 448 71 HOH HOH . C 3 HOH A 49 449 123 HOH HOH . C 3 HOH A 50 450 53 HOH HOH . C 3 HOH A 51 451 125 HOH HOH . C 3 HOH A 52 452 115 HOH HOH . C 3 HOH A 53 453 26 HOH HOH . C 3 HOH A 54 454 34 HOH HOH . C 3 HOH A 55 455 5 HOH HOH . C 3 HOH A 56 456 8 HOH HOH . C 3 HOH A 57 457 1 HOH HOH . C 3 HOH A 58 458 122 HOH HOH . C 3 HOH A 59 459 104 HOH HOH . C 3 HOH A 60 460 41 HOH HOH . C 3 HOH A 61 461 118 HOH HOH . C 3 HOH A 62 462 93 HOH HOH . C 3 HOH A 63 463 40 HOH HOH . C 3 HOH A 64 464 79 HOH HOH . C 3 HOH A 65 465 84 HOH HOH . C 3 HOH A 66 466 107 HOH HOH . C 3 HOH A 67 467 120 HOH HOH . C 3 HOH A 68 468 116 HOH HOH . C 3 HOH A 69 469 124 HOH HOH . C 3 HOH A 70 470 4 HOH HOH . C 3 HOH A 71 471 9 HOH HOH . C 3 HOH A 72 472 33 HOH HOH . C 3 HOH A 73 473 94 HOH HOH . C 3 HOH A 74 474 12 HOH HOH . C 3 HOH A 75 475 97 HOH HOH . C 3 HOH A 76 476 95 HOH HOH . C 3 HOH A 77 477 38 HOH HOH . C 3 HOH A 78 478 135 HOH HOH . C 3 HOH A 79 479 142 HOH HOH . C 3 HOH A 80 480 30 HOH HOH . C 3 HOH A 81 481 61 HOH HOH . C 3 HOH A 82 482 14 HOH HOH . C 3 HOH A 83 483 72 HOH HOH . C 3 HOH A 84 484 54 HOH HOH . C 3 HOH A 85 485 85 HOH HOH . C 3 HOH A 86 486 113 HOH HOH . C 3 HOH A 87 487 50 HOH HOH . C 3 HOH A 88 488 131 HOH HOH . C 3 HOH A 89 489 117 HOH HOH . C 3 HOH A 90 490 75 HOH HOH . C 3 HOH A 91 491 39 HOH HOH . C 3 HOH A 92 492 78 HOH HOH . C 3 HOH A 93 493 56 HOH HOH . C 3 HOH A 94 494 24 HOH HOH . C 3 HOH A 95 495 29 HOH HOH . C 3 HOH A 96 496 82 HOH HOH . C 3 HOH A 97 497 126 HOH HOH . C 3 HOH A 98 498 46 HOH HOH . C 3 HOH A 99 499 16 HOH HOH . C 3 HOH A 100 500 80 HOH HOH . C 3 HOH A 101 501 7 HOH HOH . C 3 HOH A 102 502 64 HOH HOH . C 3 HOH A 103 503 2 HOH HOH . C 3 HOH A 104 504 22 HOH HOH . C 3 HOH A 105 505 102 HOH HOH . C 3 HOH A 106 506 92 HOH HOH . C 3 HOH A 107 507 127 HOH HOH . C 3 HOH A 108 508 65 HOH HOH . C 3 HOH A 109 509 55 HOH HOH . C 3 HOH A 110 510 52 HOH HOH . C 3 HOH A 111 511 87 HOH HOH . C 3 HOH A 112 512 70 HOH HOH . C 3 HOH A 113 513 68 HOH HOH . C 3 HOH A 114 514 145 HOH HOH . C 3 HOH A 115 515 13 HOH HOH . C 3 HOH A 116 516 110 HOH HOH . C 3 HOH A 117 517 108 HOH HOH . C 3 HOH A 118 518 28 HOH HOH . C 3 HOH A 119 519 144 HOH HOH . C 3 HOH A 120 520 132 HOH HOH . C 3 HOH A 121 521 133 HOH HOH . C 3 HOH A 122 522 109 HOH HOH . C 3 HOH A 123 523 111 HOH HOH . C 3 HOH A 124 524 96 HOH HOH . C 3 HOH A 125 525 141 HOH HOH . C 3 HOH A 126 526 139 HOH HOH . C 3 HOH A 127 527 128 HOH HOH . C 3 HOH A 128 528 99 HOH HOH . C 3 HOH A 129 529 59 HOH HOH . C 3 HOH A 130 530 112 HOH HOH . C 3 HOH A 131 531 146 HOH HOH . C 3 HOH A 132 532 43 HOH HOH . C 3 HOH A 133 533 114 HOH HOH . C 3 HOH A 134 534 36 HOH HOH . C 3 HOH A 135 535 101 HOH HOH . C 3 HOH A 136 536 98 HOH HOH . C 3 HOH A 137 537 140 HOH HOH . C 3 HOH A 138 538 137 HOH HOH . C 3 HOH A 139 539 138 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . B 2 3.761 13.879 10.708 1 9 ? P AMP 301 A 1 HETATM 2 O O1P AMP . . . B 2 4.636 13.044 9.804 1 8.98 ? O1P AMP 301 A 1 HETATM 3 O O2P AMP . . . B 2 3.702 15.344 10.377 1 9.07 ? O2P AMP 301 A 1 HETATM 4 O O3P AMP . . . B 2 3.971 13.644 12.188 1 8.8 ? O3P AMP 301 A 1 HETATM 5 O O5' AMP . . . B 2 2.243 13.335 10.508 1 9.61 ? O5' AMP 301 A 1 HETATM 6 C C5' AMP . . . B 2 1.832 12.699 9.304 1 10.18 ? C5' AMP 301 A 1 HETATM 7 C C4' AMP . . . B 2 1.872 13.705 8.148 1 10.63 ? C4' AMP 301 A 1 HETATM 8 O O4' AMP . . . B 2 1.66 13.063 6.886 1 10.9 ? O4' AMP 301 A 1 HETATM 9 C C3' AMP . . . B 2 0.804 14.791 8.232 1 11.07 ? C3' AMP 301 A 1 HETATM 10 O O3' AMP . . . B 2 1.436 16.043 8.526 1 12.06 ? O3' AMP 301 A 1 HETATM 11 C C2' AMP . . . B 2 0.164 14.84 6.858 1 11.16 ? C2' AMP 301 A 1 HETATM 12 O O2' AMP . . . B 2 0.051 16.166 6.34 1 11.68 ? O2' AMP 301 A 1 HETATM 13 C C1' AMP . . . B 2 1.171 14.079 6.035 1 10.69 ? C1' AMP 301 A 1 HETATM 14 N N9 AMP . . . B 2 0.677 13.391 4.851 1 10.13 ? N9 AMP 301 A 1 HETATM 15 C C8 AMP . . . B 2 -0.556 12.894 4.592 1 9.81 ? C8 AMP 301 A 1 HETATM 16 N N7 AMP . . . B 2 -0.555 12.278 3.397 1 9.38 ? N7 AMP 301 A 1 HETATM 17 C C5 AMP . . . B 2 0.698 12.364 2.894 1 9.32 ? C5 AMP 301 A 1 HETATM 18 C C6 AMP . . . B 2 1.38 11.923 1.672 1 9.4 ? C6 AMP 301 A 1 HETATM 19 N N6 AMP . . . B 2 0.683 11.251 0.712 1 9.68 ? N6 AMP 301 A 1 HETATM 20 N N1 AMP . . . B 2 2.697 12.22 1.543 1 9.07 ? N1 AMP 301 A 1 HETATM 21 C C2 AMP . . . B 2 3.389 12.895 2.493 1 8.84 ? C2 AMP 301 A 1 HETATM 22 N N3 AMP . . . B 2 2.816 13.331 3.63 1 9.01 ? N3 AMP 301 A 1 HETATM 23 C C4 AMP . . . B 2 1.506 13.1 3.864 1 9.53 ? C4 AMP 301 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #