data_5X0E # _model_server_result.job_id w3567vdt837QTeU8828MvQ _model_server_result.datetime_utc '2024-12-01 08:02:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x0e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5X0E # _exptl.entry_id 5X0E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 185.072 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHOSERINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5X0E _cell.length_a 35.667 _cell.length_b 43.224 _cell.length_c 157.519 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X0E _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 69 A ASP 69 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc2 B O3P AMP . A AMP 301 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc3 C O1P SEP . A SEP 302 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc4 D MG MG . A MG 303 1_555 E O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc5 D MG MG . A MG 303 1_555 E O HOH . A HOH 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc6 D MG MG . A MG 303 1_555 E O HOH . A HOH 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? # _chem_comp.formula 'C3 H8 N O6 P' _chem_comp.formula_weight 185.072 _chem_comp.id SEP _chem_comp.mon_nstd_flag n _chem_comp.name PHOSPHOSERINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms PHOSPHONOSERINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SEP sing 303 n n N H SEP sing 304 n n N H2 SEP sing 305 n n CA CB SEP sing 306 n n CA C SEP sing 307 n n CA HA SEP sing 308 n n CB OG SEP sing 309 n n CB HB2 SEP sing 310 n n CB HB3 SEP sing 311 n n OG P SEP sing 312 n n C O SEP doub 313 n n C OXT SEP sing 314 n n OXT HXT SEP sing 315 n n P O1P SEP doub 316 n n P O2P SEP sing 317 n n P O3P SEP sing 318 n n O2P HOP2 SEP sing 319 n n O3P HOP3 SEP sing 320 n n # _atom_sites.entry_id 5X0E _atom_sites.fract_transf_matrix[1][1] 0.028037 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023135 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006348 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 301 301 AMP AMP . C 3 SEP A 1 302 302 SEP SEP . D 4 MG A 1 303 303 MG MG . E 5 HOH A 1 401 144 HOH HOH . E 5 HOH A 2 402 61 HOH HOH . E 5 HOH A 3 403 81 HOH HOH . E 5 HOH A 4 404 114 HOH HOH . E 5 HOH A 5 405 44 HOH HOH . E 5 HOH A 6 406 67 HOH HOH . E 5 HOH A 7 407 120 HOH HOH . E 5 HOH A 8 408 105 HOH HOH . E 5 HOH A 9 409 91 HOH HOH . E 5 HOH A 10 410 48 HOH HOH . E 5 HOH A 11 411 75 HOH HOH . E 5 HOH A 12 412 65 HOH HOH . E 5 HOH A 13 413 9 HOH HOH . E 5 HOH A 14 414 155 HOH HOH . E 5 HOH A 15 415 119 HOH HOH . E 5 HOH A 16 416 3 HOH HOH . E 5 HOH A 17 417 23 HOH HOH . E 5 HOH A 18 418 88 HOH HOH . E 5 HOH A 19 419 148 HOH HOH . E 5 HOH A 20 420 11 HOH HOH . E 5 HOH A 21 421 37 HOH HOH . E 5 HOH A 22 422 47 HOH HOH . E 5 HOH A 23 423 111 HOH HOH . E 5 HOH A 24 424 108 HOH HOH . E 5 HOH A 25 425 97 HOH HOH . E 5 HOH A 26 426 49 HOH HOH . E 5 HOH A 27 427 93 HOH HOH . E 5 HOH A 28 428 72 HOH HOH . E 5 HOH A 29 429 38 HOH HOH . E 5 HOH A 30 430 25 HOH HOH . E 5 HOH A 31 431 52 HOH HOH . E 5 HOH A 32 432 13 HOH HOH . E 5 HOH A 33 433 83 HOH HOH . E 5 HOH A 34 434 12 HOH HOH . E 5 HOH A 35 435 56 HOH HOH . E 5 HOH A 36 436 59 HOH HOH . E 5 HOH A 37 437 137 HOH HOH . E 5 HOH A 38 438 84 HOH HOH . E 5 HOH A 39 439 42 HOH HOH . E 5 HOH A 40 440 4 HOH HOH . E 5 HOH A 41 441 18 HOH HOH . E 5 HOH A 42 442 53 HOH HOH . E 5 HOH A 43 443 10 HOH HOH . E 5 HOH A 44 444 20 HOH HOH . E 5 HOH A 45 445 17 HOH HOH . E 5 HOH A 46 446 36 HOH HOH . E 5 HOH A 47 447 106 HOH HOH . E 5 HOH A 48 448 138 HOH HOH . E 5 HOH A 49 449 154 HOH HOH . E 5 HOH A 50 450 55 HOH HOH . E 5 HOH A 51 451 57 HOH HOH . E 5 HOH A 52 452 27 HOH HOH . E 5 HOH A 53 453 147 HOH HOH . E 5 HOH A 54 454 39 HOH HOH . E 5 HOH A 55 455 1 HOH HOH . E 5 HOH A 56 456 16 HOH HOH . E 5 HOH A 57 457 76 HOH HOH . E 5 HOH A 58 458 94 HOH HOH . E 5 HOH A 59 459 58 HOH HOH . E 5 HOH A 60 460 89 HOH HOH . E 5 HOH A 61 461 96 HOH HOH . E 5 HOH A 62 462 34 HOH HOH . E 5 HOH A 63 463 21 HOH HOH . E 5 HOH A 64 464 71 HOH HOH . E 5 HOH A 65 465 82 HOH HOH . E 5 HOH A 66 466 19 HOH HOH . E 5 HOH A 67 467 15 HOH HOH . E 5 HOH A 68 468 79 HOH HOH . E 5 HOH A 69 469 2 HOH HOH . E 5 HOH A 70 470 68 HOH HOH . E 5 HOH A 71 471 149 HOH HOH . E 5 HOH A 72 472 113 HOH HOH . E 5 HOH A 73 473 8 HOH HOH . E 5 HOH A 74 474 90 HOH HOH . E 5 HOH A 75 475 30 HOH HOH . E 5 HOH A 76 476 70 HOH HOH . E 5 HOH A 77 477 35 HOH HOH . E 5 HOH A 78 478 6 HOH HOH . E 5 HOH A 79 479 150 HOH HOH . E 5 HOH A 80 480 100 HOH HOH . E 5 HOH A 81 481 14 HOH HOH . E 5 HOH A 82 482 45 HOH HOH . E 5 HOH A 83 483 146 HOH HOH . E 5 HOH A 84 484 5 HOH HOH . E 5 HOH A 85 485 29 HOH HOH . E 5 HOH A 86 486 85 HOH HOH . E 5 HOH A 87 487 145 HOH HOH . E 5 HOH A 88 488 86 HOH HOH . E 5 HOH A 89 489 60 HOH HOH . E 5 HOH A 90 490 99 HOH HOH . E 5 HOH A 91 491 135 HOH HOH . E 5 HOH A 92 492 116 HOH HOH . E 5 HOH A 93 493 151 HOH HOH . E 5 HOH A 94 494 32 HOH HOH . E 5 HOH A 95 495 54 HOH HOH . E 5 HOH A 96 496 140 HOH HOH . E 5 HOH A 97 497 152 HOH HOH . E 5 HOH A 98 498 7 HOH HOH . E 5 HOH A 99 499 64 HOH HOH . E 5 HOH A 100 500 43 HOH HOH . E 5 HOH A 101 501 80 HOH HOH . E 5 HOH A 102 502 22 HOH HOH . E 5 HOH A 103 503 73 HOH HOH . E 5 HOH A 104 504 123 HOH HOH . E 5 HOH A 105 505 33 HOH HOH . E 5 HOH A 106 506 28 HOH HOH . E 5 HOH A 107 507 78 HOH HOH . E 5 HOH A 108 508 41 HOH HOH . E 5 HOH A 109 509 117 HOH HOH . E 5 HOH A 110 510 62 HOH HOH . E 5 HOH A 111 511 46 HOH HOH . E 5 HOH A 112 512 109 HOH HOH . E 5 HOH A 113 513 129 HOH HOH . E 5 HOH A 114 514 87 HOH HOH . E 5 HOH A 115 515 126 HOH HOH . E 5 HOH A 116 516 125 HOH HOH . E 5 HOH A 117 517 51 HOH HOH . E 5 HOH A 118 518 124 HOH HOH . E 5 HOH A 119 519 40 HOH HOH . E 5 HOH A 120 520 26 HOH HOH . E 5 HOH A 121 521 24 HOH HOH . E 5 HOH A 122 522 103 HOH HOH . E 5 HOH A 123 523 101 HOH HOH . E 5 HOH A 124 524 31 HOH HOH . E 5 HOH A 125 525 122 HOH HOH . E 5 HOH A 126 526 142 HOH HOH . E 5 HOH A 127 527 63 HOH HOH . E 5 HOH A 128 528 107 HOH HOH . E 5 HOH A 129 529 133 HOH HOH . E 5 HOH A 130 530 139 HOH HOH . E 5 HOH A 131 531 104 HOH HOH . E 5 HOH A 132 532 69 HOH HOH . E 5 HOH A 133 533 77 HOH HOH . E 5 HOH A 134 534 128 HOH HOH . E 5 HOH A 135 535 102 HOH HOH . E 5 HOH A 136 536 121 HOH HOH . E 5 HOH A 137 537 98 HOH HOH . E 5 HOH A 138 538 130 HOH HOH . E 5 HOH A 139 539 66 HOH HOH . E 5 HOH A 140 540 136 HOH HOH . E 5 HOH A 141 541 132 HOH HOH . E 5 HOH A 142 542 141 HOH HOH . E 5 HOH A 143 543 153 HOH HOH . E 5 HOH A 144 544 127 HOH HOH . E 5 HOH A 145 545 92 HOH HOH . E 5 HOH A 146 546 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SEP . . . C 3 13.191 1.328 -24.877 1 8.52 ? N SEP 302 A 1 HETATM 2 C CA SEP . . . C 3 12.995 0.161 -25.785 1 8.52 ? CA SEP 302 A 1 HETATM 3 C CB SEP . . . C 3 13.214 -1.146 -25.033 1 8.47 ? CB SEP 302 A 1 HETATM 4 O OG SEP . . . C 3 14.554 -1.17 -24.549 1 8.46 ? OG SEP 302 A 1 HETATM 5 C C SEP . . . C 3 11.643 0.241 -26.431 1 8.83 ? C SEP 302 A 1 HETATM 6 O O SEP . . . C 3 11.107 -0.759 -26.923 1 8.85 ? O SEP 302 A 1 HETATM 7 O OXT SEP . . . C 3 11.047 1.324 -26.487 1 8.88 ? OXT SEP 302 A 1 HETATM 8 P P SEP . . . C 3 15.796 -1.427 -25.554 1 8.37 ? P SEP 302 A 1 HETATM 9 O O1P SEP . . . C 3 15.185 -2.181 -26.711 1 8.09 ? O1P SEP 302 A 1 HETATM 10 O O2P SEP . . . C 3 16.754 -2.187 -24.658 1 8.3 ? O2P SEP 302 A 1 HETATM 11 O O3P SEP . . . C 3 16.283 -0.04 -25.885 1 8.45 ? O3P SEP 302 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 40 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 11 #