data_5X0G # _model_server_result.job_id cFjI721CfVZyaYnIIa4cCg _model_server_result.datetime_utc '2024-11-08 19:38:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x0g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5X0G # _exptl.entry_id 5X0G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5X0G _cell.length_a 39.766 _cell.length_b 69.745 _cell.length_c 87.159 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X0G _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 45 n n PB O2B ADP sing 46 n n PB O3B ADP sing 47 n n PB O3A ADP sing 48 n n O2B HOB2 ADP sing 49 n n O3B HOB3 ADP sing 50 n n PA O1A ADP doub 51 n n PA O2A ADP sing 52 n n PA O3A ADP sing 53 n n PA O5' ADP sing 54 n n O2A HOA2 ADP sing 55 n n O5' C5' ADP sing 56 n n C5' C4' ADP sing 57 n n C5' "H5'1" ADP sing 58 n n C5' "H5'2" ADP sing 59 n n C4' O4' ADP sing 60 n n C4' C3' ADP sing 61 n n C4' H4' ADP sing 62 n n O4' C1' ADP sing 63 n n C3' O3' ADP sing 64 n n C3' C2' ADP sing 65 n n C3' H3' ADP sing 66 n n O3' HO3' ADP sing 67 n n C2' O2' ADP sing 68 n n C2' C1' ADP sing 69 n n C2' H2' ADP sing 70 n n O2' HO2' ADP sing 71 n n C1' N9 ADP sing 72 n n C1' H1' ADP sing 73 n n N9 C8 ADP sing 74 n y N9 C4 ADP sing 75 n y C8 N7 ADP doub 76 n y C8 H8 ADP sing 77 n n N7 C5 ADP sing 78 n y C5 C6 ADP sing 79 n y C5 C4 ADP doub 80 n y C6 N6 ADP sing 81 n n C6 N1 ADP doub 82 n y N6 HN61 ADP sing 83 n n N6 HN62 ADP sing 84 n n N1 C2 ADP sing 85 n y C2 N3 ADP doub 86 n y C2 H2 ADP sing 87 n n N3 C4 ADP sing 88 n y # _atom_sites.entry_id 5X0G _atom_sites.fract_transf_matrix[1][1] 0.025147 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014338 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011473 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 301 301 AMP AMP . C 3 ADP A 1 302 302 ADP ADP . D 4 7WF A 1 303 1 7WF 250 . E 5 HOH A 1 401 31 HOH HOH . E 5 HOH A 2 402 48 HOH HOH . E 5 HOH A 3 403 19 HOH HOH . E 5 HOH A 4 404 27 HOH HOH . E 5 HOH A 5 405 16 HOH HOH . E 5 HOH A 6 406 13 HOH HOH . E 5 HOH A 7 407 30 HOH HOH . E 5 HOH A 8 408 32 HOH HOH . E 5 HOH A 9 409 74 HOH HOH . E 5 HOH A 10 410 70 HOH HOH . E 5 HOH A 11 411 45 HOH HOH . E 5 HOH A 12 412 38 HOH HOH . E 5 HOH A 13 413 22 HOH HOH . E 5 HOH A 14 414 26 HOH HOH . E 5 HOH A 15 415 15 HOH HOH . E 5 HOH A 16 416 63 HOH HOH . E 5 HOH A 17 417 12 HOH HOH . E 5 HOH A 18 418 18 HOH HOH . E 5 HOH A 19 419 2 HOH HOH . E 5 HOH A 20 420 4 HOH HOH . E 5 HOH A 21 421 50 HOH HOH . E 5 HOH A 22 422 43 HOH HOH . E 5 HOH A 23 423 75 HOH HOH . E 5 HOH A 24 424 72 HOH HOH . E 5 HOH A 25 425 8 HOH HOH . E 5 HOH A 26 426 58 HOH HOH . E 5 HOH A 27 427 33 HOH HOH . E 5 HOH A 28 428 52 HOH HOH . E 5 HOH A 29 429 6 HOH HOH . E 5 HOH A 30 430 62 HOH HOH . E 5 HOH A 31 431 51 HOH HOH . E 5 HOH A 32 432 40 HOH HOH . E 5 HOH A 33 433 66 HOH HOH . E 5 HOH A 34 434 5 HOH HOH . E 5 HOH A 35 435 36 HOH HOH . E 5 HOH A 36 436 68 HOH HOH . E 5 HOH A 37 437 54 HOH HOH . E 5 HOH A 38 438 11 HOH HOH . E 5 HOH A 39 439 25 HOH HOH . E 5 HOH A 40 440 35 HOH HOH . E 5 HOH A 41 441 17 HOH HOH . E 5 HOH A 42 442 21 HOH HOH . E 5 HOH A 43 443 67 HOH HOH . E 5 HOH A 44 444 23 HOH HOH . E 5 HOH A 45 445 60 HOH HOH . E 5 HOH A 46 446 24 HOH HOH . E 5 HOH A 47 447 37 HOH HOH . E 5 HOH A 48 448 29 HOH HOH . E 5 HOH A 49 449 7 HOH HOH . E 5 HOH A 50 450 14 HOH HOH . E 5 HOH A 51 451 61 HOH HOH . E 5 HOH A 52 452 10 HOH HOH . E 5 HOH A 53 453 71 HOH HOH . E 5 HOH A 54 454 3 HOH HOH . E 5 HOH A 55 455 56 HOH HOH . E 5 HOH A 56 456 9 HOH HOH . E 5 HOH A 57 457 49 HOH HOH . E 5 HOH A 58 458 73 HOH HOH . E 5 HOH A 59 459 57 HOH HOH . E 5 HOH A 60 460 53 HOH HOH . E 5 HOH A 61 461 28 HOH HOH . E 5 HOH A 62 462 59 HOH HOH . E 5 HOH A 63 463 34 HOH HOH . E 5 HOH A 64 464 47 HOH HOH . E 5 HOH A 65 465 64 HOH HOH . E 5 HOH A 66 466 69 HOH HOH . E 5 HOH A 67 467 44 HOH HOH . E 5 HOH A 68 468 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . B . C 3 4.403 15.019 13.287 0.5 21.47 ? PB ADP 302 A 1 HETATM 2 O O1B ADP . B . C 3 3.978 16.298 12.594 0.5 21.41 ? O1B ADP 302 A 1 HETATM 3 O O2B ADP . B . C 3 5.9 14.847 13.368 0.5 21.21 ? O2B ADP 302 A 1 HETATM 4 O O3B ADP . B . C 3 3.637 14.724 14.55 0.5 20.93 ? O3B ADP 302 A 1 HETATM 5 P PA ADP . B . C 3 3.735 14.047 10.748 0.5 19.92 ? PA ADP 302 A 1 HETATM 6 O O1A ADP . B . C 3 4.483 12.969 10.003 0.5 19.28 ? O1A ADP 302 A 1 HETATM 7 O O2A ADP . B . C 3 4.053 15.489 10.446 0.5 20.03 ? O2A ADP 302 A 1 HETATM 8 O O3A ADP . B . C 3 3.92 13.82 12.324 0.5 20.57 ? O3A ADP 302 A 1 HETATM 9 O O5' ADP . B . C 3 2.154 13.788 10.553 0.5 19.05 ? O5' ADP 302 A 1 HETATM 10 C C5' ADP . B . C 3 1.6 13.216 9.37 0.5 17.95 ? C5' ADP 302 A 1 HETATM 11 C C4' ADP . B . C 3 1.827 14.112 8.159 0.5 17.29 ? C4' ADP 302 A 1 HETATM 12 O O4' ADP . B . C 3 1.764 13.322 6.972 0.5 16.87 ? O4' ADP 302 A 1 HETATM 13 C C3' ADP . B . C 3 0.781 15.215 7.974 0.5 16.9 ? C3' ADP 302 A 1 HETATM 14 O O3' ADP . B . C 3 1.416 16.486 7.81 0.5 16.42 ? O3' ADP 302 A 1 HETATM 15 C C2' ADP . B . C 3 0.058 14.864 6.695 0.5 16.65 ? C2' ADP 302 A 1 HETATM 16 O O2' ADP . B . C 3 -0.397 15.996 5.942 0.5 16.54 ? O2' ADP 302 A 1 HETATM 17 C C1' ADP . B . C 3 1.163 14.136 5.968 0.5 16.48 ? C1' ADP 302 A 1 HETATM 18 N N9 ADP . B . C 3 0.67 13.385 4.8 0.5 16.22 ? N9 ADP 302 A 1 HETATM 19 C C8 ADP . B . C 3 -0.578 12.926 4.582 0.5 15.87 ? C8 ADP 302 A 1 HETATM 20 N N7 ADP . B . C 3 -0.641 12.288 3.388 0.5 15.67 ? N7 ADP 302 A 1 HETATM 21 C C5 ADP . B . C 3 0.583 12.352 2.828 0.5 15.79 ? C5 ADP 302 A 1 HETATM 22 C C6 ADP . B . C 3 1.22 11.891 1.582 0.5 15.77 ? C6 ADP 302 A 1 HETATM 23 N N6 ADP . B . C 3 0.525 11.209 0.642 0.5 15.71 ? N6 ADP 302 A 1 HETATM 24 N N1 ADP . B . C 3 2.532 12.174 1.413 0.5 15.47 ? N1 ADP 302 A 1 HETATM 25 C C2 ADP . B . C 3 3.259 12.845 2.322 0.5 15.54 ? C2 ADP 302 A 1 HETATM 26 N N3 ADP . B . C 3 2.742 13.296 3.471 0.5 15.79 ? N3 ADP 302 A 1 HETATM 27 C C4 ADP . B . C 3 1.438 13.081 3.765 0.5 15.92 ? C4 ADP 302 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #