data_5X0K # _model_server_result.job_id huM0m2dw-tQLc1vsYbAxlg _model_server_result.datetime_utc '2024-11-08 20:03:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x0k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5X0K # _exptl.entry_id 5X0K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5X0K _cell.length_a 39.936 _cell.length_b 69.602 _cell.length_c 87.431 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X0K _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 5X0K _atom_sites.fract_transf_matrix[1][1] 0.02504 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014367 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011438 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 301 301 AMP AMP . C 3 HOH A 1 401 110 HOH HOH . C 3 HOH A 2 402 41 HOH HOH . C 3 HOH A 3 403 84 HOH HOH . C 3 HOH A 4 404 118 HOH HOH . C 3 HOH A 5 405 69 HOH HOH . C 3 HOH A 6 406 42 HOH HOH . C 3 HOH A 7 407 1 HOH HOH . C 3 HOH A 8 408 97 HOH HOH . C 3 HOH A 9 409 25 HOH HOH . C 3 HOH A 10 410 4 HOH HOH . C 3 HOH A 11 411 88 HOH HOH . C 3 HOH A 12 412 34 HOH HOH . C 3 HOH A 13 413 37 HOH HOH . C 3 HOH A 14 414 33 HOH HOH . C 3 HOH A 15 415 28 HOH HOH . C 3 HOH A 16 416 16 HOH HOH . C 3 HOH A 17 417 61 HOH HOH . C 3 HOH A 18 418 18 HOH HOH . C 3 HOH A 19 419 98 HOH HOH . C 3 HOH A 20 420 73 HOH HOH . C 3 HOH A 21 421 36 HOH HOH . C 3 HOH A 22 422 29 HOH HOH . C 3 HOH A 23 423 19 HOH HOH . C 3 HOH A 24 424 115 HOH HOH . C 3 HOH A 25 425 91 HOH HOH . C 3 HOH A 26 426 12 HOH HOH . C 3 HOH A 27 427 50 HOH HOH . C 3 HOH A 28 428 31 HOH HOH . C 3 HOH A 29 429 10 HOH HOH . C 3 HOH A 30 430 48 HOH HOH . C 3 HOH A 31 431 66 HOH HOH . C 3 HOH A 32 432 9 HOH HOH . C 3 HOH A 33 433 114 HOH HOH . C 3 HOH A 34 434 43 HOH HOH . C 3 HOH A 35 435 94 HOH HOH . C 3 HOH A 36 436 26 HOH HOH . C 3 HOH A 37 437 23 HOH HOH . C 3 HOH A 38 438 60 HOH HOH . C 3 HOH A 39 439 49 HOH HOH . C 3 HOH A 40 440 90 HOH HOH . C 3 HOH A 41 441 45 HOH HOH . C 3 HOH A 42 442 11 HOH HOH . C 3 HOH A 43 443 8 HOH HOH . C 3 HOH A 44 444 54 HOH HOH . C 3 HOH A 45 445 24 HOH HOH . C 3 HOH A 46 446 56 HOH HOH . C 3 HOH A 47 447 95 HOH HOH . C 3 HOH A 48 448 76 HOH HOH . C 3 HOH A 49 449 64 HOH HOH . C 3 HOH A 50 450 109 HOH HOH . C 3 HOH A 51 451 111 HOH HOH . C 3 HOH A 52 452 71 HOH HOH . C 3 HOH A 53 453 63 HOH HOH . C 3 HOH A 54 454 27 HOH HOH . C 3 HOH A 55 455 32 HOH HOH . C 3 HOH A 56 456 21 HOH HOH . C 3 HOH A 57 457 15 HOH HOH . C 3 HOH A 58 458 102 HOH HOH . C 3 HOH A 59 459 35 HOH HOH . C 3 HOH A 60 460 6 HOH HOH . C 3 HOH A 61 461 62 HOH HOH . C 3 HOH A 62 462 2 HOH HOH . C 3 HOH A 63 463 44 HOH HOH . C 3 HOH A 64 464 7 HOH HOH . C 3 HOH A 65 465 96 HOH HOH . C 3 HOH A 66 466 58 HOH HOH . C 3 HOH A 67 467 22 HOH HOH . C 3 HOH A 68 468 40 HOH HOH . C 3 HOH A 69 469 47 HOH HOH . C 3 HOH A 70 470 55 HOH HOH . C 3 HOH A 71 471 5 HOH HOH . C 3 HOH A 72 472 83 HOH HOH . C 3 HOH A 73 473 3 HOH HOH . C 3 HOH A 74 474 52 HOH HOH . C 3 HOH A 75 475 20 HOH HOH . C 3 HOH A 76 476 82 HOH HOH . C 3 HOH A 77 477 113 HOH HOH . C 3 HOH A 78 478 13 HOH HOH . C 3 HOH A 79 479 77 HOH HOH . C 3 HOH A 80 480 72 HOH HOH . C 3 HOH A 81 481 51 HOH HOH . C 3 HOH A 82 482 78 HOH HOH . C 3 HOH A 83 483 116 HOH HOH . C 3 HOH A 84 484 14 HOH HOH . C 3 HOH A 85 485 92 HOH HOH . C 3 HOH A 86 486 46 HOH HOH . C 3 HOH A 87 487 117 HOH HOH . C 3 HOH A 88 488 30 HOH HOH . C 3 HOH A 89 489 87 HOH HOH . C 3 HOH A 90 490 89 HOH HOH . C 3 HOH A 91 491 106 HOH HOH . C 3 HOH A 92 492 38 HOH HOH . C 3 HOH A 93 493 17 HOH HOH . C 3 HOH A 94 494 80 HOH HOH . C 3 HOH A 95 495 107 HOH HOH . C 3 HOH A 96 496 74 HOH HOH . C 3 HOH A 97 497 39 HOH HOH . C 3 HOH A 98 498 85 HOH HOH . C 3 HOH A 99 499 57 HOH HOH . C 3 HOH A 100 500 105 HOH HOH . C 3 HOH A 101 501 99 HOH HOH . C 3 HOH A 102 502 103 HOH HOH . C 3 HOH A 103 503 100 HOH HOH . C 3 HOH A 104 504 65 HOH HOH . C 3 HOH A 105 505 81 HOH HOH . C 3 HOH A 106 506 67 HOH HOH . C 3 HOH A 107 507 53 HOH HOH . C 3 HOH A 108 508 112 HOH HOH . C 3 HOH A 109 509 70 HOH HOH . C 3 HOH A 110 510 101 HOH HOH . C 3 HOH A 111 511 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . B 2 3.726 13.897 10.65 1 13.14 ? P AMP 301 A 1 HETATM 2 O O1P AMP . . . B 2 4.565 13.081 9.728 1 13.28 ? O1P AMP 301 A 1 HETATM 3 O O2P AMP . . . B 2 3.93 13.635 12.105 1 12.82 ? O2P AMP 301 A 1 HETATM 4 O O3P AMP . . . B 2 3.758 15.371 10.312 1 14.24 ? O3P AMP 301 A 1 HETATM 5 O O5' AMP . . . B 2 2.196 13.384 10.412 1 14.38 ? O5' AMP 301 A 1 HETATM 6 C C5' AMP . . . B 2 1.813 12.803 9.179 1 14.43 ? C5' AMP 301 A 1 HETATM 7 C C4' AMP . . . B 2 1.872 13.826 8.051 1 15.1 ? C4' AMP 301 A 1 HETATM 8 O O4' AMP . . . B 2 1.671 13.158 6.822 1 15.39 ? O4' AMP 301 A 1 HETATM 9 C C3' AMP . . . B 2 0.789 14.9 8.098 1 16.12 ? C3' AMP 301 A 1 HETATM 10 O O3' AMP . . . B 2 1.4 16.171 8.306 1 18.32 ? O3' AMP 301 A 1 HETATM 11 C C2' AMP . . . B 2 0.106 14.841 6.746 1 15.57 ? C2' AMP 301 A 1 HETATM 12 O O2' AMP . . . B 2 -0.176 16.112 6.129 1 17.22 ? O2' AMP 301 A 1 HETATM 13 C C1' AMP . . . B 2 1.148 14.113 5.931 1 14.63 ? C1' AMP 301 A 1 HETATM 14 N N9 AMP . . . B 2 0.678 13.403 4.753 1 13.74 ? N9 AMP 301 A 1 HETATM 15 C C8 AMP . . . B 2 -0.559 12.911 4.471 1 12.86 ? C8 AMP 301 A 1 HETATM 16 N N7 AMP . . . B 2 -0.554 12.301 3.271 1 12.68 ? N7 AMP 301 A 1 HETATM 17 C C5 AMP . . . B 2 0.712 12.374 2.793 1 12.11 ? C5 AMP 301 A 1 HETATM 18 C C6 AMP . . . B 2 1.354 11.932 1.561 1 12.04 ? C6 AMP 301 A 1 HETATM 19 N N6 AMP . . . B 2 0.65 11.268 0.614 1 12.18 ? N6 AMP 301 A 1 HETATM 20 N N1 AMP . . . B 2 2.681 12.218 1.424 1 11.41 ? N1 AMP 301 A 1 HETATM 21 C C2 AMP . . . B 2 3.363 12.867 2.407 1 11.22 ? C2 AMP 301 A 1 HETATM 22 N N3 AMP . . . B 2 2.83 13.327 3.556 1 11.83 ? N3 AMP 301 A 1 HETATM 23 C C4 AMP . . . B 2 1.508 13.103 3.774 1 12.53 ? C4 AMP 301 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #