data_5X13 # _model_server_result.job_id OKe1sQ-Q5C0cZ9_W37OKmQ _model_server_result.datetime_utc '2025-03-06 02:45:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x13 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5X13 # _exptl.entry_id 5X13 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.1 _cell.angle_gamma 90 _cell.entry_id 5X13 _cell.length_a 76.514 _cell.length_b 75.45 _cell.length_c 38.125 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X13 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -4.051318 0 37.909134 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 5X13 _atom_sites.fract_transf_matrix[1][1] 0.01307 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001397 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013254 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026379 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HC4 A 1 201 1 HC4 HC4 . C 3 GOL A 1 202 1 GOL GOL . D 4 HOH A 1 301 239 HOH HOH . D 4 HOH A 2 302 138 HOH HOH . D 4 HOH A 3 303 175 HOH HOH . D 4 HOH A 4 304 104 HOH HOH . D 4 HOH A 5 305 166 HOH HOH . D 4 HOH A 6 306 90 HOH HOH . D 4 HOH A 7 307 64 HOH HOH . D 4 HOH A 8 308 72 HOH HOH . D 4 HOH A 9 309 119 HOH HOH . D 4 HOH A 10 310 9 HOH HOH . D 4 HOH A 11 311 154 HOH HOH . D 4 HOH A 12 312 108 HOH HOH . D 4 HOH A 13 313 127 HOH HOH . D 4 HOH A 14 314 144 HOH HOH . D 4 HOH A 15 315 182 HOH HOH . D 4 HOH A 16 316 178 HOH HOH . D 4 HOH A 17 317 78 HOH HOH . D 4 HOH A 18 318 152 HOH HOH . D 4 HOH A 19 319 114 HOH HOH . D 4 HOH A 20 320 66 HOH HOH . D 4 HOH A 21 321 94 HOH HOH . D 4 HOH A 22 322 75 HOH HOH . D 4 HOH A 23 323 25 HOH HOH . D 4 HOH A 24 324 14 HOH HOH . D 4 HOH A 25 325 112 HOH HOH . D 4 HOH A 26 326 82 HOH HOH . D 4 HOH A 27 327 86 HOH HOH . D 4 HOH A 28 328 47 HOH HOH . D 4 HOH A 29 329 221 HOH HOH . D 4 HOH A 30 330 69 HOH HOH . D 4 HOH A 31 331 87 HOH HOH . D 4 HOH A 32 332 217 HOH HOH . D 4 HOH A 33 333 244 HOH HOH . D 4 HOH A 34 334 118 HOH HOH . D 4 HOH A 35 335 5 HOH HOH . D 4 HOH A 36 336 226 HOH HOH . D 4 HOH A 37 337 176 HOH HOH . D 4 HOH A 38 338 41 HOH HOH . D 4 HOH A 39 339 53 HOH HOH . D 4 HOH A 40 340 40 HOH HOH . D 4 HOH A 41 341 153 HOH HOH . D 4 HOH A 42 342 50 HOH HOH . D 4 HOH A 43 343 19 HOH HOH . D 4 HOH A 44 344 95 HOH HOH . D 4 HOH A 45 345 16 HOH HOH . D 4 HOH A 46 346 39 HOH HOH . D 4 HOH A 47 347 43 HOH HOH . D 4 HOH A 48 348 111 HOH HOH . D 4 HOH A 49 349 7 HOH HOH . D 4 HOH A 50 350 34 HOH HOH . D 4 HOH A 51 351 215 HOH HOH . D 4 HOH A 52 352 44 HOH HOH . D 4 HOH A 53 353 49 HOH HOH . D 4 HOH A 54 354 67 HOH HOH . D 4 HOH A 55 355 52 HOH HOH . D 4 HOH A 56 356 184 HOH HOH . D 4 HOH A 57 357 15 HOH HOH . D 4 HOH A 58 358 223 HOH HOH . D 4 HOH A 59 359 124 HOH HOH . D 4 HOH A 60 360 201 HOH HOH . D 4 HOH A 61 361 143 HOH HOH . D 4 HOH A 62 362 105 HOH HOH . D 4 HOH A 63 363 29 HOH HOH . D 4 HOH A 64 364 88 HOH HOH . D 4 HOH A 65 365 151 HOH HOH . D 4 HOH A 66 366 65 HOH HOH . D 4 HOH A 67 367 12 HOH HOH . D 4 HOH A 68 368 214 HOH HOH . D 4 HOH A 69 369 24 HOH HOH . D 4 HOH A 70 370 35 HOH HOH . D 4 HOH A 71 371 36 HOH HOH . D 4 HOH A 72 372 140 HOH HOH . D 4 HOH A 73 373 30 HOH HOH . D 4 HOH A 74 374 8 HOH HOH . D 4 HOH A 75 375 60 HOH HOH . D 4 HOH A 76 376 18 HOH HOH . D 4 HOH A 77 377 133 HOH HOH . D 4 HOH A 78 378 167 HOH HOH . D 4 HOH A 79 379 218 HOH HOH . D 4 HOH A 80 380 58 HOH HOH . D 4 HOH A 81 381 46 HOH HOH . D 4 HOH A 82 382 91 HOH HOH . D 4 HOH A 83 383 219 HOH HOH . D 4 HOH A 84 384 13 HOH HOH . D 4 HOH A 85 385 74 HOH HOH . D 4 HOH A 86 386 10 HOH HOH . D 4 HOH A 87 387 73 HOH HOH . D 4 HOH A 88 388 130 HOH HOH . D 4 HOH A 89 389 228 HOH HOH . D 4 HOH A 90 390 149 HOH HOH . D 4 HOH A 91 391 216 HOH HOH . D 4 HOH A 92 392 89 HOH HOH . D 4 HOH A 93 393 220 HOH HOH . D 4 HOH A 94 394 21 HOH HOH . D 4 HOH A 95 395 136 HOH HOH . D 4 HOH A 96 396 162 HOH HOH . D 4 HOH A 97 397 106 HOH HOH . D 4 HOH A 98 398 92 HOH HOH . D 4 HOH A 99 399 42 HOH HOH . D 4 HOH A 100 400 28 HOH HOH . D 4 HOH A 101 401 45 HOH HOH . D 4 HOH A 102 402 101 HOH HOH . D 4 HOH A 103 403 4 HOH HOH . D 4 HOH A 104 404 33 HOH HOH . D 4 HOH A 105 405 55 HOH HOH . D 4 HOH A 106 406 6 HOH HOH . D 4 HOH A 107 407 96 HOH HOH . D 4 HOH A 108 408 51 HOH HOH . D 4 HOH A 109 409 77 HOH HOH . D 4 HOH A 110 410 54 HOH HOH . D 4 HOH A 111 411 17 HOH HOH . D 4 HOH A 112 412 2 HOH HOH . D 4 HOH A 113 413 240 HOH HOH . D 4 HOH A 114 414 249 HOH HOH . D 4 HOH A 115 415 48 HOH HOH . D 4 HOH A 116 416 222 HOH HOH . D 4 HOH A 117 417 123 HOH HOH . D 4 HOH A 118 418 231 HOH HOH . D 4 HOH A 119 419 145 HOH HOH . D 4 HOH A 120 420 68 HOH HOH . D 4 HOH A 121 421 81 HOH HOH . D 4 HOH A 122 422 209 HOH HOH . D 4 HOH A 123 423 129 HOH HOH . D 4 HOH A 124 424 59 HOH HOH . D 4 HOH A 125 425 31 HOH HOH . D 4 HOH A 126 426 80 HOH HOH . D 4 HOH A 127 427 84 HOH HOH . D 4 HOH A 128 428 56 HOH HOH . D 4 HOH A 129 429 70 HOH HOH . D 4 HOH A 130 430 32 HOH HOH . D 4 HOH A 131 431 61 HOH HOH . D 4 HOH A 132 432 57 HOH HOH . D 4 HOH A 133 433 159 HOH HOH . D 4 HOH A 134 434 98 HOH HOH . D 4 HOH A 135 435 97 HOH HOH . D 4 HOH A 136 436 63 HOH HOH . D 4 HOH A 137 437 109 HOH HOH . D 4 HOH A 138 438 202 HOH HOH . D 4 HOH A 139 439 160 HOH HOH . D 4 HOH A 140 440 171 HOH HOH . D 4 HOH A 141 441 229 HOH HOH . D 4 HOH A 142 442 135 HOH HOH . D 4 HOH A 143 443 242 HOH HOH . D 4 HOH A 144 444 227 HOH HOH . D 4 HOH A 145 445 107 HOH HOH . D 4 HOH A 146 446 38 HOH HOH . D 4 HOH A 147 447 203 HOH HOH . D 4 HOH A 148 448 116 HOH HOH . D 4 HOH A 149 449 99 HOH HOH . D 4 HOH A 150 450 234 HOH HOH . D 4 HOH A 151 451 83 HOH HOH . D 4 HOH A 152 452 206 HOH HOH . D 4 HOH A 153 453 250 HOH HOH . D 4 HOH A 154 454 235 HOH HOH . D 4 HOH A 155 455 230 HOH HOH . D 4 HOH A 156 456 146 HOH HOH . D 4 HOH A 157 457 113 HOH HOH . D 4 HOH A 158 458 22 HOH HOH . D 4 HOH A 159 459 156 HOH HOH . D 4 HOH A 160 460 199 HOH HOH . D 4 HOH A 161 461 205 HOH HOH . D 4 HOH A 162 462 85 HOH HOH . D 4 HOH A 163 463 23 HOH HOH . D 4 HOH A 164 464 125 HOH HOH . D 4 HOH A 165 465 102 HOH HOH . D 4 HOH A 166 466 158 HOH HOH . D 4 HOH A 167 467 26 HOH HOH . D 4 HOH A 168 468 188 HOH HOH . D 4 HOH A 169 469 200 HOH HOH . D 4 HOH A 170 470 110 HOH HOH . D 4 HOH A 171 471 115 HOH HOH . D 4 HOH A 172 472 131 HOH HOH . D 4 HOH A 173 473 207 HOH HOH . D 4 HOH A 174 474 251 HOH HOH . D 4 HOH A 175 475 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 23.234 -5.945 26.643 1 30.06 ? C1 GOL 202 A 1 HETATM 2 O O1 GOL . . . C 3 24.419 -5.193 26.887 1 34.16 ? O1 GOL 202 A 1 HETATM 3 C C2 GOL . . . C 3 23.454 -7.002 25.559 1 26.3 ? C2 GOL 202 A 1 HETATM 4 O O2 GOL . . . C 3 22.215 -7.554 25.167 1 22.61 ? O2 GOL 202 A 1 HETATM 5 C C3 GOL . . . C 3 24.503 -8.037 25.974 1 29.4 ? C3 GOL 202 A 1 HETATM 6 O O3 GOL . . . C 3 24.215 -8.695 27.189 1 29.59 ? O3 GOL 202 A 1 # _model_server_stats.io_time_ms 286 _model_server_stats.parse_time_ms 42 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 1208 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #