data_5X18 # _model_server_result.job_id hJG5Kyr-mPEYAGMeu4ASWw _model_server_result.datetime_utc '2024-11-30 09:29:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x18 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 5X18 # _exptl.entry_id 5X18 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 104.061 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.89 _cell.angle_gamma 90 _cell.entry_id 5X18 _cell.length_a 45.503 _cell.length_b 97.918 _cell.length_c 84.737 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X18 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N # _chem_comp.formula 'C3 H4 O4' _chem_comp.formula_weight 104.061 _chem_comp.id MLA _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A MLA sing 250 n n C1 O1B MLA doub 251 n n C1 C2 MLA sing 252 n n O1A H1A MLA sing 253 n n C2 C3 MLA sing 254 n n C2 HC21 MLA sing 255 n n C2 HC22 MLA sing 256 n n C3 O3A MLA doub 257 n n C3 O3B MLA sing 258 n n O3B H3B MLA sing 259 n n # _atom_sites.entry_id 5X18 _atom_sites.fract_transf_matrix[1][1] 0.021977 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001494 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010213 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011828 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 401 1 GOL GOL . D 2 GOL A 1 402 2 GOL GOL . E 2 GOL A 1 403 5 GOL GOL . F 3 MLA A 1 404 1 MLA MLA . G 2 GOL B 1 401 3 GOL GOL . H 2 GOL B 1 402 4 GOL GOL . I 3 MLA B 1 403 2 MLA MLA . J 4 HOH A 1 501 139 HOH HOH . J 4 HOH A 2 502 266 HOH HOH . J 4 HOH A 3 503 64 HOH HOH . J 4 HOH A 4 504 66 HOH HOH . J 4 HOH A 5 505 119 HOH HOH . J 4 HOH A 6 506 301 HOH HOH . J 4 HOH A 7 507 269 HOH HOH . J 4 HOH A 8 508 189 HOH HOH . J 4 HOH A 9 509 211 HOH HOH . J 4 HOH A 10 510 40 HOH HOH . J 4 HOH A 11 511 124 HOH HOH . J 4 HOH A 12 512 302 HOH HOH . J 4 HOH A 13 513 32 HOH HOH . J 4 HOH A 14 514 294 HOH HOH . J 4 HOH A 15 515 313 HOH HOH . J 4 HOH A 16 516 62 HOH HOH . J 4 HOH A 17 517 315 HOH HOH . J 4 HOH A 18 518 1 HOH HOH . J 4 HOH A 19 519 10 HOH HOH . J 4 HOH A 20 520 70 HOH HOH . J 4 HOH A 21 521 14 HOH HOH . J 4 HOH A 22 522 185 HOH HOH . J 4 HOH A 23 523 84 HOH HOH . J 4 HOH A 24 524 8 HOH HOH . J 4 HOH A 25 525 284 HOH HOH . J 4 HOH A 26 526 24 HOH HOH . J 4 HOH A 27 527 200 HOH HOH . J 4 HOH A 28 528 215 HOH HOH . J 4 HOH A 29 529 314 HOH HOH . J 4 HOH A 30 530 41 HOH HOH . J 4 HOH A 31 531 107 HOH HOH . J 4 HOH A 32 532 161 HOH HOH . J 4 HOH A 33 533 149 HOH HOH . J 4 HOH A 34 534 212 HOH HOH . J 4 HOH A 35 535 288 HOH HOH . J 4 HOH A 36 536 37 HOH HOH . J 4 HOH A 37 537 196 HOH HOH . J 4 HOH A 38 538 54 HOH HOH . J 4 HOH A 39 539 49 HOH HOH . J 4 HOH A 40 540 85 HOH HOH . J 4 HOH A 41 541 121 HOH HOH . J 4 HOH A 42 542 187 HOH HOH . J 4 HOH A 43 543 111 HOH HOH . J 4 HOH A 44 544 65 HOH HOH . J 4 HOH A 45 545 26 HOH HOH . J 4 HOH A 46 546 208 HOH HOH . J 4 HOH A 47 547 228 HOH HOH . J 4 HOH A 48 548 145 HOH HOH . J 4 HOH A 49 549 90 HOH HOH . J 4 HOH A 50 550 188 HOH HOH . J 4 HOH A 51 551 186 HOH HOH . J 4 HOH A 52 552 75 HOH HOH . J 4 HOH A 53 553 120 HOH HOH . J 4 HOH A 54 554 136 HOH HOH . J 4 HOH A 55 555 109 HOH HOH . J 4 HOH A 56 556 7 HOH HOH . J 4 HOH A 57 557 154 HOH HOH . J 4 HOH A 58 558 11 HOH HOH . J 4 HOH A 59 559 204 HOH HOH . J 4 HOH A 60 560 295 HOH HOH . J 4 HOH A 61 561 59 HOH HOH . J 4 HOH A 62 562 13 HOH HOH . J 4 HOH A 63 563 300 HOH HOH . J 4 HOH A 64 564 138 HOH HOH . J 4 HOH A 65 565 184 HOH HOH . J 4 HOH A 66 566 244 HOH HOH . J 4 HOH A 67 567 176 HOH HOH . J 4 HOH A 68 568 216 HOH HOH . J 4 HOH A 69 569 115 HOH HOH . J 4 HOH A 70 570 27 HOH HOH . J 4 HOH A 71 571 89 HOH HOH . J 4 HOH A 72 572 174 HOH HOH . J 4 HOH A 73 573 148 HOH HOH . J 4 HOH A 74 574 129 HOH HOH . J 4 HOH A 75 575 53 HOH HOH . J 4 HOH A 76 576 128 HOH HOH . J 4 HOH A 77 577 253 HOH HOH . J 4 HOH A 78 578 157 HOH HOH . J 4 HOH A 79 579 20 HOH HOH . J 4 HOH A 80 580 114 HOH HOH . J 4 HOH A 81 581 235 HOH HOH . J 4 HOH A 82 582 275 HOH HOH . J 4 HOH A 83 583 309 HOH HOH . J 4 HOH A 84 584 190 HOH HOH . J 4 HOH A 85 585 93 HOH HOH . J 4 HOH A 86 586 29 HOH HOH . J 4 HOH A 87 587 210 HOH HOH . J 4 HOH A 88 588 308 HOH HOH . J 4 HOH A 89 589 181 HOH HOH . J 4 HOH A 90 590 274 HOH HOH . J 4 HOH A 91 591 201 HOH HOH . J 4 HOH A 92 592 207 HOH HOH . J 4 HOH A 93 593 220 HOH HOH . J 4 HOH A 94 594 74 HOH HOH . J 4 HOH A 95 595 73 HOH HOH . J 4 HOH A 96 596 83 HOH HOH . J 4 HOH A 97 597 158 HOH HOH . J 4 HOH A 98 598 155 HOH HOH . J 4 HOH A 99 599 141 HOH HOH . J 4 HOH A 100 600 312 HOH HOH . J 4 HOH A 101 601 177 HOH HOH . J 4 HOH A 102 602 61 HOH HOH . J 4 HOH A 103 603 112 HOH HOH . J 4 HOH A 104 604 213 HOH HOH . J 4 HOH A 105 605 22 HOH HOH . J 4 HOH A 106 606 165 HOH HOH . J 4 HOH A 107 607 98 HOH HOH . J 4 HOH A 108 608 198 HOH HOH . J 4 HOH A 109 609 63 HOH HOH . J 4 HOH A 110 610 292 HOH HOH . J 4 HOH A 111 611 180 HOH HOH . J 4 HOH A 112 612 193 HOH HOH . J 4 HOH A 113 613 263 HOH HOH . J 4 HOH A 114 614 147 HOH HOH . J 4 HOH A 115 615 137 HOH HOH . J 4 HOH A 116 616 262 HOH HOH . J 4 HOH A 117 617 293 HOH HOH . J 4 HOH A 118 618 142 HOH HOH . J 4 HOH A 119 619 167 HOH HOH . J 4 HOH A 120 620 12 HOH HOH . J 4 HOH A 121 621 209 HOH HOH . J 4 HOH A 122 622 47 HOH HOH . J 4 HOH A 123 623 297 HOH HOH . J 4 HOH A 124 624 81 HOH HOH . J 4 HOH A 125 625 173 HOH HOH . J 4 HOH A 126 626 286 HOH HOH . J 4 HOH A 127 627 15 HOH HOH . J 4 HOH A 128 628 256 HOH HOH . J 4 HOH A 129 629 291 HOH HOH . J 4 HOH A 130 630 229 HOH HOH . J 4 HOH A 131 631 144 HOH HOH . J 4 HOH A 132 632 289 HOH HOH . J 4 HOH A 133 633 69 HOH HOH . J 4 HOH A 134 634 214 HOH HOH . J 4 HOH A 135 635 241 HOH HOH . J 4 HOH A 136 636 80 HOH HOH . J 4 HOH A 137 637 276 HOH HOH . J 4 HOH A 138 638 240 HOH HOH . J 4 HOH A 139 639 223 HOH HOH . J 4 HOH A 140 640 249 HOH HOH . J 4 HOH A 141 641 43 HOH HOH . J 4 HOH A 142 642 250 HOH HOH . J 4 HOH A 143 643 246 HOH HOH . J 4 HOH A 144 644 279 HOH HOH . J 4 HOH A 145 645 130 HOH HOH . J 4 HOH A 146 646 257 HOH HOH . J 4 HOH A 147 647 285 HOH HOH . J 4 HOH A 148 648 296 HOH HOH . J 4 HOH A 149 649 76 HOH HOH . J 4 HOH A 150 650 105 HOH HOH . J 4 HOH A 151 651 118 HOH HOH . J 4 HOH A 152 652 238 HOH HOH . J 4 HOH A 153 653 232 HOH HOH . J 4 HOH A 154 654 194 HOH HOH . J 4 HOH A 155 655 224 HOH HOH . J 4 HOH A 156 656 236 HOH HOH . J 4 HOH A 157 657 113 HOH HOH . J 4 HOH A 158 658 127 HOH HOH . J 4 HOH A 159 659 122 HOH HOH . J 4 HOH A 160 660 233 HOH HOH . J 4 HOH A 161 661 225 HOH HOH . K 4 HOH B 1 501 94 HOH HOH . K 4 HOH B 2 502 234 HOH HOH . K 4 HOH B 3 503 152 HOH HOH . K 4 HOH B 4 504 52 HOH HOH . K 4 HOH B 5 505 159 HOH HOH . K 4 HOH B 6 506 101 HOH HOH . K 4 HOH B 7 507 68 HOH HOH . K 4 HOH B 8 508 86 HOH HOH . K 4 HOH B 9 509 42 HOH HOH . K 4 HOH B 10 510 97 HOH HOH . K 4 HOH B 11 511 48 HOH HOH . K 4 HOH B 12 512 247 HOH HOH . K 4 HOH B 13 513 19 HOH HOH . K 4 HOH B 14 514 273 HOH HOH . K 4 HOH B 15 515 277 HOH HOH . K 4 HOH B 16 516 57 HOH HOH . K 4 HOH B 17 517 304 HOH HOH . K 4 HOH B 18 518 38 HOH HOH . K 4 HOH B 19 519 17 HOH HOH . K 4 HOH B 20 520 9 HOH HOH . K 4 HOH B 21 521 31 HOH HOH . K 4 HOH B 22 522 35 HOH HOH . K 4 HOH B 23 523 36 HOH HOH . K 4 HOH B 24 524 163 HOH HOH . K 4 HOH B 25 525 287 HOH HOH . K 4 HOH B 26 526 195 HOH HOH . K 4 HOH B 27 527 104 HOH HOH . K 4 HOH B 28 528 51 HOH HOH . K 4 HOH B 29 529 117 HOH HOH . K 4 HOH B 30 530 254 HOH HOH . K 4 HOH B 31 531 162 HOH HOH . K 4 HOH B 32 532 58 HOH HOH . K 4 HOH B 33 533 87 HOH HOH . K 4 HOH B 34 534 46 HOH HOH . K 4 HOH B 35 535 218 HOH HOH . K 4 HOH B 36 536 206 HOH HOH . K 4 HOH B 37 537 307 HOH HOH . K 4 HOH B 38 538 103 HOH HOH . K 4 HOH B 39 539 116 HOH HOH . K 4 HOH B 40 540 160 HOH HOH . K 4 HOH B 41 541 169 HOH HOH . K 4 HOH B 42 542 21 HOH HOH . K 4 HOH B 43 543 282 HOH HOH . K 4 HOH B 44 544 272 HOH HOH . K 4 HOH B 45 545 2 HOH HOH . K 4 HOH B 46 546 170 HOH HOH . K 4 HOH B 47 547 237 HOH HOH . K 4 HOH B 48 548 123 HOH HOH . K 4 HOH B 49 549 281 HOH HOH . K 4 HOH B 50 550 25 HOH HOH . K 4 HOH B 51 551 100 HOH HOH . K 4 HOH B 52 552 202 HOH HOH . K 4 HOH B 53 553 280 HOH HOH . K 4 HOH B 54 554 67 HOH HOH . K 4 HOH B 55 555 146 HOH HOH . K 4 HOH B 56 556 55 HOH HOH . K 4 HOH B 57 557 39 HOH HOH . K 4 HOH B 58 558 205 HOH HOH . K 4 HOH B 59 559 110 HOH HOH . K 4 HOH B 60 560 16 HOH HOH . K 4 HOH B 61 561 151 HOH HOH . K 4 HOH B 62 562 153 HOH HOH . K 4 HOH B 63 563 199 HOH HOH . K 4 HOH B 64 564 150 HOH HOH . K 4 HOH B 65 565 191 HOH HOH . K 4 HOH B 66 566 305 HOH HOH . K 4 HOH B 67 567 88 HOH HOH . K 4 HOH B 68 568 33 HOH HOH . K 4 HOH B 69 569 197 HOH HOH . K 4 HOH B 70 570 30 HOH HOH . K 4 HOH B 71 571 71 HOH HOH . K 4 HOH B 72 572 164 HOH HOH . K 4 HOH B 73 573 179 HOH HOH . K 4 HOH B 74 574 267 HOH HOH . K 4 HOH B 75 575 192 HOH HOH . K 4 HOH B 76 576 92 HOH HOH . K 4 HOH B 77 577 306 HOH HOH . K 4 HOH B 78 578 56 HOH HOH . K 4 HOH B 79 579 82 HOH HOH . K 4 HOH B 80 580 44 HOH HOH . K 4 HOH B 81 581 203 HOH HOH . K 4 HOH B 82 582 72 HOH HOH . K 4 HOH B 83 583 221 HOH HOH . K 4 HOH B 84 584 171 HOH HOH . K 4 HOH B 85 585 91 HOH HOH . K 4 HOH B 86 586 45 HOH HOH . K 4 HOH B 87 587 219 HOH HOH . K 4 HOH B 88 588 18 HOH HOH . K 4 HOH B 89 589 133 HOH HOH . K 4 HOH B 90 590 99 HOH HOH . K 4 HOH B 91 591 166 HOH HOH . K 4 HOH B 92 592 60 HOH HOH . K 4 HOH B 93 593 34 HOH HOH . K 4 HOH B 94 594 252 HOH HOH . K 4 HOH B 95 595 102 HOH HOH . K 4 HOH B 96 596 79 HOH HOH . K 4 HOH B 97 597 50 HOH HOH . K 4 HOH B 98 598 140 HOH HOH . K 4 HOH B 99 599 310 HOH HOH . K 4 HOH B 100 600 258 HOH HOH . K 4 HOH B 101 601 143 HOH HOH . K 4 HOH B 102 602 175 HOH HOH . K 4 HOH B 103 603 23 HOH HOH . K 4 HOH B 104 604 135 HOH HOH . K 4 HOH B 105 605 78 HOH HOH . K 4 HOH B 106 606 242 HOH HOH . K 4 HOH B 107 607 4 HOH HOH . K 4 HOH B 108 608 95 HOH HOH . K 4 HOH B 109 609 132 HOH HOH . K 4 HOH B 110 610 182 HOH HOH . K 4 HOH B 111 611 6 HOH HOH . K 4 HOH B 112 612 106 HOH HOH . K 4 HOH B 113 613 271 HOH HOH . K 4 HOH B 114 614 156 HOH HOH . K 4 HOH B 115 615 255 HOH HOH . K 4 HOH B 116 616 259 HOH HOH . K 4 HOH B 117 617 270 HOH HOH . K 4 HOH B 118 618 125 HOH HOH . K 4 HOH B 119 619 217 HOH HOH . K 4 HOH B 120 620 168 HOH HOH . K 4 HOH B 121 621 126 HOH HOH . K 4 HOH B 122 622 261 HOH HOH . K 4 HOH B 123 623 183 HOH HOH . K 4 HOH B 124 624 248 HOH HOH . K 4 HOH B 125 625 5 HOH HOH . K 4 HOH B 126 626 290 HOH HOH . K 4 HOH B 127 627 264 HOH HOH . K 4 HOH B 128 628 172 HOH HOH . K 4 HOH B 129 629 260 HOH HOH . K 4 HOH B 130 630 178 HOH HOH . K 4 HOH B 131 631 283 HOH HOH . K 4 HOH B 132 632 298 HOH HOH . K 4 HOH B 133 633 231 HOH HOH . K 4 HOH B 134 634 265 HOH HOH . K 4 HOH B 135 635 251 HOH HOH . K 4 HOH B 136 636 268 HOH HOH . K 4 HOH B 137 637 245 HOH HOH . K 4 HOH B 138 638 96 HOH HOH . K 4 HOH B 139 639 278 HOH HOH . K 4 HOH B 140 640 239 HOH HOH . K 4 HOH B 141 641 227 HOH HOH . K 4 HOH B 142 642 108 HOH HOH . K 4 HOH B 143 643 243 HOH HOH . K 4 HOH B 144 644 230 HOH HOH . K 4 HOH B 145 645 134 HOH HOH . K 4 HOH B 146 646 303 HOH HOH . K 4 HOH B 147 647 299 HOH HOH . K 4 HOH B 148 648 3 HOH HOH . K 4 HOH B 149 649 226 HOH HOH . K 4 HOH B 150 650 131 HOH HOH . K 4 HOH B 151 651 222 HOH HOH . K 4 HOH B 152 652 28 HOH HOH . K 4 HOH B 153 653 77 HOH HOH . K 4 HOH B 154 654 311 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLA . . . F 3 -4.977 16.569 34.357 1 61.54 ? C1 MLA 404 A 1 HETATM 2 O O1A MLA . . . F 3 -5.19 15.64 33.552 1 57.69 ? O1A MLA 404 A 1 HETATM 3 O O1B MLA . . . F 3 -3.983 16.609 35.114 1 60.79 ? O1B MLA 404 A 1 HETATM 4 C C2 MLA . . . F 3 -5.969 17.704 34.399 1 62.75 ? C2 MLA 404 A 1 HETATM 5 C C3 MLA . . . F 3 -5.482 18.858 33.557 1 62.16 ? C3 MLA 404 A 1 HETATM 6 O O3A MLA . . . F 3 -5.942 19.987 33.808 1 64.44 ? O3A MLA 404 A 1 HETATM 7 O O3B MLA . . . F 3 -4.65 18.675 32.636 1 59.81 ? O3B MLA 404 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 7 #