data_5X1K # _model_server_result.job_id bkwPZcrPHB-gbqjdhTo8wg _model_server_result.datetime_utc '2024-11-08 03:16:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x1k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":502}' # _entry.id 5X1K # _exptl.entry_id 5X1K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5X1K _cell.length_a 104.055 _cell.length_b 118.066 _cell.length_c 132.823 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X1K _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,N 1 1,2 B,C,J,K,L,M,O,P 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 K N N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 367 n n C C2 TRS sing 368 n n C C3 TRS sing 369 n n C N TRS sing 370 n n C1 O1 TRS sing 371 n n C1 H11 TRS sing 372 n n C1 H12 TRS sing 373 n n C2 O2 TRS sing 374 n n C2 H21 TRS sing 375 n n C2 H22 TRS sing 376 n n C3 O3 TRS sing 377 n n C3 H31 TRS sing 378 n n C3 H32 TRS sing 379 n n N HN1 TRS sing 380 n n N HN2 TRS sing 381 n n N HN3 TRS sing 382 n n O1 HO1 TRS sing 383 n n O2 HO2 TRS sing 384 n n O3 HO3 TRS sing 385 n n # _atom_sites.entry_id 5X1K _atom_sites.fract_transf_matrix[1][1] 0.00961 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00847 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007529 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 7WR A 1 501 1 7WR LIG . E 3 TRS A 1 502 2 TRS TRS . F 4 PEG A 1 503 3 PEG PEG . G 5 EDO A 1 504 5 EDO EDO . H 5 EDO A 1 505 6 EDO EDO . I 5 EDO A 1 506 7 EDO EDO . J 2 7WR B 1 501 2 7WR LIG . K 3 TRS B 1 502 1 TRS TRS . L 5 EDO B 1 503 4 EDO EDO . M 2 7WR C 1 501 3 7WR LIG . N 6 HOH A 1 601 182 HOH HOH . N 6 HOH A 2 602 181 HOH HOH . N 6 HOH A 3 603 120 HOH HOH . N 6 HOH A 4 604 220 HOH HOH . N 6 HOH A 5 605 142 HOH HOH . N 6 HOH A 6 606 188 HOH HOH . N 6 HOH A 7 607 252 HOH HOH . N 6 HOH A 8 608 83 HOH HOH . N 6 HOH A 9 609 185 HOH HOH . N 6 HOH A 10 610 174 HOH HOH . N 6 HOH A 11 611 72 HOH HOH . N 6 HOH A 12 612 36 HOH HOH . N 6 HOH A 13 613 85 HOH HOH . N 6 HOH A 14 614 214 HOH HOH . N 6 HOH A 15 615 232 HOH HOH . N 6 HOH A 16 616 67 HOH HOH . N 6 HOH A 17 617 215 HOH HOH . N 6 HOH A 18 618 39 HOH HOH . N 6 HOH A 19 619 74 HOH HOH . N 6 HOH A 20 620 210 HOH HOH . N 6 HOH A 21 621 238 HOH HOH . N 6 HOH A 22 622 69 HOH HOH . N 6 HOH A 23 623 41 HOH HOH . N 6 HOH A 24 624 261 HOH HOH . N 6 HOH A 25 625 96 HOH HOH . N 6 HOH A 26 626 37 HOH HOH . N 6 HOH A 27 627 73 HOH HOH . N 6 HOH A 28 628 115 HOH HOH . N 6 HOH A 29 629 102 HOH HOH . N 6 HOH A 30 630 26 HOH HOH . N 6 HOH A 31 631 200 HOH HOH . N 6 HOH A 32 632 197 HOH HOH . N 6 HOH A 33 633 108 HOH HOH . N 6 HOH A 34 634 256 HOH HOH . N 6 HOH A 35 635 86 HOH HOH . N 6 HOH A 36 636 10 HOH HOH . N 6 HOH A 37 637 128 HOH HOH . N 6 HOH A 38 638 176 HOH HOH . N 6 HOH A 39 639 47 HOH HOH . N 6 HOH A 40 640 15 HOH HOH . N 6 HOH A 41 641 76 HOH HOH . N 6 HOH A 42 642 199 HOH HOH . N 6 HOH A 43 643 91 HOH HOH . N 6 HOH A 44 644 191 HOH HOH . N 6 HOH A 45 645 46 HOH HOH . N 6 HOH A 46 646 163 HOH HOH . N 6 HOH A 47 647 161 HOH HOH . N 6 HOH A 48 648 61 HOH HOH . N 6 HOH A 49 649 130 HOH HOH . N 6 HOH A 50 650 40 HOH HOH . N 6 HOH A 51 651 263 HOH HOH . N 6 HOH A 52 652 75 HOH HOH . N 6 HOH A 53 653 212 HOH HOH . N 6 HOH A 54 654 173 HOH HOH . N 6 HOH A 55 655 112 HOH HOH . N 6 HOH A 56 656 245 HOH HOH . N 6 HOH A 57 657 153 HOH HOH . N 6 HOH A 58 658 175 HOH HOH . N 6 HOH A 59 659 60 HOH HOH . N 6 HOH A 60 660 70 HOH HOH . N 6 HOH A 61 661 204 HOH HOH . N 6 HOH A 62 662 158 HOH HOH . N 6 HOH A 63 663 54 HOH HOH . N 6 HOH A 64 664 248 HOH HOH . N 6 HOH A 65 665 201 HOH HOH . N 6 HOH A 66 666 29 HOH HOH . N 6 HOH A 67 667 225 HOH HOH . N 6 HOH A 68 668 192 HOH HOH . N 6 HOH A 69 669 35 HOH HOH . N 6 HOH A 70 670 147 HOH HOH . N 6 HOH A 71 671 5 HOH HOH . N 6 HOH A 72 672 12 HOH HOH . N 6 HOH A 73 673 235 HOH HOH . N 6 HOH A 74 674 160 HOH HOH . N 6 HOH A 75 675 124 HOH HOH . N 6 HOH A 76 676 43 HOH HOH . N 6 HOH A 77 677 217 HOH HOH . N 6 HOH A 78 678 186 HOH HOH . N 6 HOH A 79 679 118 HOH HOH . N 6 HOH A 80 680 32 HOH HOH . N 6 HOH A 81 681 11 HOH HOH . N 6 HOH A 82 682 57 HOH HOH . N 6 HOH A 83 683 177 HOH HOH . N 6 HOH A 84 684 98 HOH HOH . N 6 HOH A 85 685 95 HOH HOH . N 6 HOH A 86 686 89 HOH HOH . N 6 HOH A 87 687 134 HOH HOH . N 6 HOH A 88 688 100 HOH HOH . N 6 HOH A 89 689 148 HOH HOH . N 6 HOH A 90 690 262 HOH HOH . N 6 HOH A 91 691 66 HOH HOH . N 6 HOH A 92 692 52 HOH HOH . N 6 HOH A 93 693 241 HOH HOH . N 6 HOH A 94 694 63 HOH HOH . N 6 HOH A 95 695 58 HOH HOH . N 6 HOH A 96 696 250 HOH HOH . N 6 HOH A 97 697 107 HOH HOH . N 6 HOH A 98 698 77 HOH HOH . N 6 HOH A 99 699 151 HOH HOH . N 6 HOH A 100 700 119 HOH HOH . N 6 HOH A 101 701 129 HOH HOH . N 6 HOH A 102 702 81 HOH HOH . N 6 HOH A 103 703 240 HOH HOH . N 6 HOH A 104 704 152 HOH HOH . N 6 HOH A 105 705 34 HOH HOH . N 6 HOH A 106 706 38 HOH HOH . N 6 HOH A 107 707 53 HOH HOH . N 6 HOH A 108 708 104 HOH HOH . N 6 HOH A 109 709 168 HOH HOH . N 6 HOH A 110 710 127 HOH HOH . N 6 HOH A 111 711 84 HOH HOH . N 6 HOH A 112 712 48 HOH HOH . N 6 HOH A 113 713 51 HOH HOH . N 6 HOH A 114 714 157 HOH HOH . N 6 HOH A 115 715 27 HOH HOH . N 6 HOH A 116 716 23 HOH HOH . N 6 HOH A 117 717 49 HOH HOH . N 6 HOH A 118 718 164 HOH HOH . N 6 HOH A 119 719 59 HOH HOH . N 6 HOH A 120 720 114 HOH HOH . N 6 HOH A 121 721 62 HOH HOH . N 6 HOH A 122 722 222 HOH HOH . N 6 HOH A 123 723 166 HOH HOH . N 6 HOH A 124 724 136 HOH HOH . N 6 HOH A 125 725 159 HOH HOH . N 6 HOH A 126 726 155 HOH HOH . N 6 HOH A 127 727 97 HOH HOH . N 6 HOH A 128 728 116 HOH HOH . N 6 HOH A 129 729 55 HOH HOH . N 6 HOH A 130 730 150 HOH HOH . N 6 HOH A 131 731 106 HOH HOH . N 6 HOH A 132 732 92 HOH HOH . N 6 HOH A 133 733 233 HOH HOH . N 6 HOH A 134 734 93 HOH HOH . N 6 HOH A 135 735 20 HOH HOH . N 6 HOH A 136 736 33 HOH HOH . N 6 HOH A 137 737 167 HOH HOH . N 6 HOH A 138 738 79 HOH HOH . N 6 HOH A 139 739 4 HOH HOH . N 6 HOH A 140 740 162 HOH HOH . N 6 HOH A 141 741 82 HOH HOH . N 6 HOH A 142 742 90 HOH HOH . N 6 HOH A 143 743 253 HOH HOH . N 6 HOH A 144 744 14 HOH HOH . N 6 HOH A 145 745 211 HOH HOH . N 6 HOH A 146 746 113 HOH HOH . N 6 HOH A 147 747 42 HOH HOH . N 6 HOH A 148 748 234 HOH HOH . N 6 HOH A 149 749 193 HOH HOH . N 6 HOH A 150 750 122 HOH HOH . N 6 HOH A 151 751 179 HOH HOH . N 6 HOH A 152 752 56 HOH HOH . N 6 HOH A 153 753 132 HOH HOH . N 6 HOH A 154 754 126 HOH HOH . N 6 HOH A 155 755 137 HOH HOH . N 6 HOH A 156 756 228 HOH HOH . N 6 HOH A 157 757 180 HOH HOH . N 6 HOH A 158 758 45 HOH HOH . N 6 HOH A 159 759 258 HOH HOH . N 6 HOH A 160 760 135 HOH HOH . O 6 HOH B 1 601 203 HOH HOH . O 6 HOH B 2 602 183 HOH HOH . O 6 HOH B 3 603 184 HOH HOH . O 6 HOH B 4 604 198 HOH HOH . O 6 HOH B 5 605 226 HOH HOH . O 6 HOH B 6 606 78 HOH HOH . O 6 HOH B 7 607 219 HOH HOH . O 6 HOH B 8 608 187 HOH HOH . O 6 HOH B 9 609 189 HOH HOH . O 6 HOH B 10 610 243 HOH HOH . O 6 HOH B 11 611 254 HOH HOH . O 6 HOH B 12 612 237 HOH HOH . O 6 HOH B 13 613 9 HOH HOH . O 6 HOH B 14 614 213 HOH HOH . O 6 HOH B 15 615 13 HOH HOH . O 6 HOH B 16 616 206 HOH HOH . O 6 HOH B 17 617 172 HOH HOH . O 6 HOH B 18 618 123 HOH HOH . O 6 HOH B 19 619 16 HOH HOH . O 6 HOH B 20 620 25 HOH HOH . O 6 HOH B 21 621 165 HOH HOH . O 6 HOH B 22 622 31 HOH HOH . O 6 HOH B 23 623 242 HOH HOH . O 6 HOH B 24 624 264 HOH HOH . O 6 HOH B 25 625 21 HOH HOH . O 6 HOH B 26 626 111 HOH HOH . O 6 HOH B 27 627 230 HOH HOH . O 6 HOH B 28 628 209 HOH HOH . O 6 HOH B 29 629 68 HOH HOH . O 6 HOH B 30 630 94 HOH HOH . O 6 HOH B 31 631 205 HOH HOH . O 6 HOH B 32 632 8 HOH HOH . O 6 HOH B 33 633 190 HOH HOH . O 6 HOH B 34 634 221 HOH HOH . O 6 HOH B 35 635 236 HOH HOH . O 6 HOH B 36 636 50 HOH HOH . O 6 HOH B 37 637 101 HOH HOH . O 6 HOH B 38 638 17 HOH HOH . O 6 HOH B 39 639 246 HOH HOH . O 6 HOH B 40 640 24 HOH HOH . O 6 HOH B 41 641 244 HOH HOH . O 6 HOH B 42 642 194 HOH HOH . O 6 HOH B 43 643 88 HOH HOH . O 6 HOH B 44 644 18 HOH HOH . O 6 HOH B 45 645 169 HOH HOH . O 6 HOH B 46 646 247 HOH HOH . O 6 HOH B 47 647 171 HOH HOH . O 6 HOH B 48 648 207 HOH HOH . O 6 HOH B 49 649 224 HOH HOH . O 6 HOH B 50 650 117 HOH HOH . O 6 HOH B 51 651 216 HOH HOH . O 6 HOH B 52 652 105 HOH HOH . O 6 HOH B 53 653 103 HOH HOH . O 6 HOH B 54 654 44 HOH HOH . O 6 HOH B 55 655 259 HOH HOH . O 6 HOH B 56 656 251 HOH HOH . O 6 HOH B 57 657 80 HOH HOH . O 6 HOH B 58 658 110 HOH HOH . O 6 HOH B 59 659 71 HOH HOH . O 6 HOH B 60 660 141 HOH HOH . O 6 HOH B 61 661 154 HOH HOH . O 6 HOH B 62 662 30 HOH HOH . O 6 HOH B 63 663 170 HOH HOH . O 6 HOH B 64 664 149 HOH HOH . O 6 HOH B 65 665 121 HOH HOH . O 6 HOH B 66 666 19 HOH HOH . O 6 HOH B 67 667 178 HOH HOH . O 6 HOH B 68 668 133 HOH HOH . O 6 HOH B 69 669 87 HOH HOH . O 6 HOH B 70 670 99 HOH HOH . O 6 HOH B 71 671 218 HOH HOH . O 6 HOH B 72 672 144 HOH HOH . O 6 HOH B 73 673 156 HOH HOH . O 6 HOH B 74 674 6 HOH HOH . O 6 HOH B 75 675 125 HOH HOH . O 6 HOH B 76 676 239 HOH HOH . O 6 HOH B 77 677 139 HOH HOH . O 6 HOH B 78 678 64 HOH HOH . O 6 HOH B 79 679 229 HOH HOH . O 6 HOH B 80 680 109 HOH HOH . P 6 HOH C 1 601 227 HOH HOH . P 6 HOH C 2 602 196 HOH HOH . P 6 HOH C 3 603 208 HOH HOH . P 6 HOH C 4 604 257 HOH HOH . P 6 HOH C 5 605 202 HOH HOH . P 6 HOH C 6 606 195 HOH HOH . P 6 HOH C 7 607 260 HOH HOH . P 6 HOH C 8 608 249 HOH HOH . P 6 HOH C 9 609 255 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . K 3 -25.06 -43.488 -25.129 1 39.9 ? C TRS 502 B 1 HETATM 2 C C1 TRS . . . K 3 -24.232 -42.205 -25.074 1 38.57 ? C1 TRS 502 B 1 HETATM 3 C C2 TRS . . . K 3 -26.537 -43.171 -24.955 1 36.24 ? C2 TRS 502 B 1 HETATM 4 C C3 TRS . . . K 3 -24.717 -44.428 -23.991 1 38.3 ? C3 TRS 502 B 1 HETATM 5 N N TRS . . . K 3 -24.845 -44.111 -26.442 1 33.47 ? N TRS 502 B 1 HETATM 6 O O1 TRS . . . K 3 -24.807 -41.252 -24.21 1 34.39 ? O1 TRS 502 B 1 HETATM 7 O O2 TRS . . . K 3 -26.765 -41.996 -25.688 1 36.55 ? O2 TRS 502 B 1 HETATM 8 O O3 TRS . . . K 3 -25.463 -43.954 -22.891 1 40.68 ? O3 TRS 502 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #