data_5X1K
#
_model_server_result.job_id            ktXiXxGbZApzrB9mEPSA0g 
_model_server_result.datetime_utc      '2024-11-08 03:23:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5x1k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":504}' 
#
_entry.id    5X1K 
#
_exptl.entry_id    5X1K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5X1K 
_cell.length_a            104.055 
_cell.length_b            118.066 
_cell.length_c            132.823 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5X1K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,N 1 1,2 
B,C,J,K,L,M,O,P 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 L N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 91 n n 
C1 C2 EDO sing 92 n n 
C1 H11 EDO sing 93 n n 
C1 H12 EDO sing 94 n n 
O1 HO1 EDO sing 95 n n 
C2 O2 EDO sing 96 n n 
C2 H21 EDO sing 97 n n 
C2 H22 EDO sing 98 n n 
O2 HO2 EDO sing 99 n n 
#
_atom_sites.entry_id                     5X1K 
_atom_sites.fract_transf_matrix[1][1]    0.00961 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00847 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007529 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 7WR A 1 501 1 7WR LIG . 
E 3 TRS A 1 502 2 TRS TRS . 
F 4 PEG A 1 503 3 PEG PEG . 
G 5 EDO A 1 504 5 EDO EDO . 
H 5 EDO A 1 505 6 EDO EDO . 
I 5 EDO A 1 506 7 EDO EDO . 
J 2 7WR B 1 501 2 7WR LIG . 
K 3 TRS B 1 502 1 TRS TRS . 
L 5 EDO B 1 503 4 EDO EDO . 
M 2 7WR C 1 501 3 7WR LIG . 
N 6 HOH A 1 601 182 HOH HOH . 
N 6 HOH A 2 602 181 HOH HOH . 
N 6 HOH A 3 603 120 HOH HOH . 
N 6 HOH A 4 604 220 HOH HOH . 
N 6 HOH A 5 605 142 HOH HOH . 
N 6 HOH A 6 606 188 HOH HOH . 
N 6 HOH A 7 607 252 HOH HOH . 
N 6 HOH A 8 608 83 HOH HOH . 
N 6 HOH A 9 609 185 HOH HOH . 
N 6 HOH A 10 610 174 HOH HOH . 
N 6 HOH A 11 611 72 HOH HOH . 
N 6 HOH A 12 612 36 HOH HOH . 
N 6 HOH A 13 613 85 HOH HOH . 
N 6 HOH A 14 614 214 HOH HOH . 
N 6 HOH A 15 615 232 HOH HOH . 
N 6 HOH A 16 616 67 HOH HOH . 
N 6 HOH A 17 617 215 HOH HOH . 
N 6 HOH A 18 618 39 HOH HOH . 
N 6 HOH A 19 619 74 HOH HOH . 
N 6 HOH A 20 620 210 HOH HOH . 
N 6 HOH A 21 621 238 HOH HOH . 
N 6 HOH A 22 622 69 HOH HOH . 
N 6 HOH A 23 623 41 HOH HOH . 
N 6 HOH A 24 624 261 HOH HOH . 
N 6 HOH A 25 625 96 HOH HOH . 
N 6 HOH A 26 626 37 HOH HOH . 
N 6 HOH A 27 627 73 HOH HOH . 
N 6 HOH A 28 628 115 HOH HOH . 
N 6 HOH A 29 629 102 HOH HOH . 
N 6 HOH A 30 630 26 HOH HOH . 
N 6 HOH A 31 631 200 HOH HOH . 
N 6 HOH A 32 632 197 HOH HOH . 
N 6 HOH A 33 633 108 HOH HOH . 
N 6 HOH A 34 634 256 HOH HOH . 
N 6 HOH A 35 635 86 HOH HOH . 
N 6 HOH A 36 636 10 HOH HOH . 
N 6 HOH A 37 637 128 HOH HOH . 
N 6 HOH A 38 638 176 HOH HOH . 
N 6 HOH A 39 639 47 HOH HOH . 
N 6 HOH A 40 640 15 HOH HOH . 
N 6 HOH A 41 641 76 HOH HOH . 
N 6 HOH A 42 642 199 HOH HOH . 
N 6 HOH A 43 643 91 HOH HOH . 
N 6 HOH A 44 644 191 HOH HOH . 
N 6 HOH A 45 645 46 HOH HOH . 
N 6 HOH A 46 646 163 HOH HOH . 
N 6 HOH A 47 647 161 HOH HOH . 
N 6 HOH A 48 648 61 HOH HOH . 
N 6 HOH A 49 649 130 HOH HOH . 
N 6 HOH A 50 650 40 HOH HOH . 
N 6 HOH A 51 651 263 HOH HOH . 
N 6 HOH A 52 652 75 HOH HOH . 
N 6 HOH A 53 653 212 HOH HOH . 
N 6 HOH A 54 654 173 HOH HOH . 
N 6 HOH A 55 655 112 HOH HOH . 
N 6 HOH A 56 656 245 HOH HOH . 
N 6 HOH A 57 657 153 HOH HOH . 
N 6 HOH A 58 658 175 HOH HOH . 
N 6 HOH A 59 659 60 HOH HOH . 
N 6 HOH A 60 660 70 HOH HOH . 
N 6 HOH A 61 661 204 HOH HOH . 
N 6 HOH A 62 662 158 HOH HOH . 
N 6 HOH A 63 663 54 HOH HOH . 
N 6 HOH A 64 664 248 HOH HOH . 
N 6 HOH A 65 665 201 HOH HOH . 
N 6 HOH A 66 666 29 HOH HOH . 
N 6 HOH A 67 667 225 HOH HOH . 
N 6 HOH A 68 668 192 HOH HOH . 
N 6 HOH A 69 669 35 HOH HOH . 
N 6 HOH A 70 670 147 HOH HOH . 
N 6 HOH A 71 671 5 HOH HOH . 
N 6 HOH A 72 672 12 HOH HOH . 
N 6 HOH A 73 673 235 HOH HOH . 
N 6 HOH A 74 674 160 HOH HOH . 
N 6 HOH A 75 675 124 HOH HOH . 
N 6 HOH A 76 676 43 HOH HOH . 
N 6 HOH A 77 677 217 HOH HOH . 
N 6 HOH A 78 678 186 HOH HOH . 
N 6 HOH A 79 679 118 HOH HOH . 
N 6 HOH A 80 680 32 HOH HOH . 
N 6 HOH A 81 681 11 HOH HOH . 
N 6 HOH A 82 682 57 HOH HOH . 
N 6 HOH A 83 683 177 HOH HOH . 
N 6 HOH A 84 684 98 HOH HOH . 
N 6 HOH A 85 685 95 HOH HOH . 
N 6 HOH A 86 686 89 HOH HOH . 
N 6 HOH A 87 687 134 HOH HOH . 
N 6 HOH A 88 688 100 HOH HOH . 
N 6 HOH A 89 689 148 HOH HOH . 
N 6 HOH A 90 690 262 HOH HOH . 
N 6 HOH A 91 691 66 HOH HOH . 
N 6 HOH A 92 692 52 HOH HOH . 
N 6 HOH A 93 693 241 HOH HOH . 
N 6 HOH A 94 694 63 HOH HOH . 
N 6 HOH A 95 695 58 HOH HOH . 
N 6 HOH A 96 696 250 HOH HOH . 
N 6 HOH A 97 697 107 HOH HOH . 
N 6 HOH A 98 698 77 HOH HOH . 
N 6 HOH A 99 699 151 HOH HOH . 
N 6 HOH A 100 700 119 HOH HOH . 
N 6 HOH A 101 701 129 HOH HOH . 
N 6 HOH A 102 702 81 HOH HOH . 
N 6 HOH A 103 703 240 HOH HOH . 
N 6 HOH A 104 704 152 HOH HOH . 
N 6 HOH A 105 705 34 HOH HOH . 
N 6 HOH A 106 706 38 HOH HOH . 
N 6 HOH A 107 707 53 HOH HOH . 
N 6 HOH A 108 708 104 HOH HOH . 
N 6 HOH A 109 709 168 HOH HOH . 
N 6 HOH A 110 710 127 HOH HOH . 
N 6 HOH A 111 711 84 HOH HOH . 
N 6 HOH A 112 712 48 HOH HOH . 
N 6 HOH A 113 713 51 HOH HOH . 
N 6 HOH A 114 714 157 HOH HOH . 
N 6 HOH A 115 715 27 HOH HOH . 
N 6 HOH A 116 716 23 HOH HOH . 
N 6 HOH A 117 717 49 HOH HOH . 
N 6 HOH A 118 718 164 HOH HOH . 
N 6 HOH A 119 719 59 HOH HOH . 
N 6 HOH A 120 720 114 HOH HOH . 
N 6 HOH A 121 721 62 HOH HOH . 
N 6 HOH A 122 722 222 HOH HOH . 
N 6 HOH A 123 723 166 HOH HOH . 
N 6 HOH A 124 724 136 HOH HOH . 
N 6 HOH A 125 725 159 HOH HOH . 
N 6 HOH A 126 726 155 HOH HOH . 
N 6 HOH A 127 727 97 HOH HOH . 
N 6 HOH A 128 728 116 HOH HOH . 
N 6 HOH A 129 729 55 HOH HOH . 
N 6 HOH A 130 730 150 HOH HOH . 
N 6 HOH A 131 731 106 HOH HOH . 
N 6 HOH A 132 732 92 HOH HOH . 
N 6 HOH A 133 733 233 HOH HOH . 
N 6 HOH A 134 734 93 HOH HOH . 
N 6 HOH A 135 735 20 HOH HOH . 
N 6 HOH A 136 736 33 HOH HOH . 
N 6 HOH A 137 737 167 HOH HOH . 
N 6 HOH A 138 738 79 HOH HOH . 
N 6 HOH A 139 739 4 HOH HOH . 
N 6 HOH A 140 740 162 HOH HOH . 
N 6 HOH A 141 741 82 HOH HOH . 
N 6 HOH A 142 742 90 HOH HOH . 
N 6 HOH A 143 743 253 HOH HOH . 
N 6 HOH A 144 744 14 HOH HOH . 
N 6 HOH A 145 745 211 HOH HOH . 
N 6 HOH A 146 746 113 HOH HOH . 
N 6 HOH A 147 747 42 HOH HOH . 
N 6 HOH A 148 748 234 HOH HOH . 
N 6 HOH A 149 749 193 HOH HOH . 
N 6 HOH A 150 750 122 HOH HOH . 
N 6 HOH A 151 751 179 HOH HOH . 
N 6 HOH A 152 752 56 HOH HOH . 
N 6 HOH A 153 753 132 HOH HOH . 
N 6 HOH A 154 754 126 HOH HOH . 
N 6 HOH A 155 755 137 HOH HOH . 
N 6 HOH A 156 756 228 HOH HOH . 
N 6 HOH A 157 757 180 HOH HOH . 
N 6 HOH A 158 758 45 HOH HOH . 
N 6 HOH A 159 759 258 HOH HOH . 
N 6 HOH A 160 760 135 HOH HOH . 
O 6 HOH B 1 601 203 HOH HOH . 
O 6 HOH B 2 602 183 HOH HOH . 
O 6 HOH B 3 603 184 HOH HOH . 
O 6 HOH B 4 604 198 HOH HOH . 
O 6 HOH B 5 605 226 HOH HOH . 
O 6 HOH B 6 606 78 HOH HOH . 
O 6 HOH B 7 607 219 HOH HOH . 
O 6 HOH B 8 608 187 HOH HOH . 
O 6 HOH B 9 609 189 HOH HOH . 
O 6 HOH B 10 610 243 HOH HOH . 
O 6 HOH B 11 611 254 HOH HOH . 
O 6 HOH B 12 612 237 HOH HOH . 
O 6 HOH B 13 613 9 HOH HOH . 
O 6 HOH B 14 614 213 HOH HOH . 
O 6 HOH B 15 615 13 HOH HOH . 
O 6 HOH B 16 616 206 HOH HOH . 
O 6 HOH B 17 617 172 HOH HOH . 
O 6 HOH B 18 618 123 HOH HOH . 
O 6 HOH B 19 619 16 HOH HOH . 
O 6 HOH B 20 620 25 HOH HOH . 
O 6 HOH B 21 621 165 HOH HOH . 
O 6 HOH B 22 622 31 HOH HOH . 
O 6 HOH B 23 623 242 HOH HOH . 
O 6 HOH B 24 624 264 HOH HOH . 
O 6 HOH B 25 625 21 HOH HOH . 
O 6 HOH B 26 626 111 HOH HOH . 
O 6 HOH B 27 627 230 HOH HOH . 
O 6 HOH B 28 628 209 HOH HOH . 
O 6 HOH B 29 629 68 HOH HOH . 
O 6 HOH B 30 630 94 HOH HOH . 
O 6 HOH B 31 631 205 HOH HOH . 
O 6 HOH B 32 632 8 HOH HOH . 
O 6 HOH B 33 633 190 HOH HOH . 
O 6 HOH B 34 634 221 HOH HOH . 
O 6 HOH B 35 635 236 HOH HOH . 
O 6 HOH B 36 636 50 HOH HOH . 
O 6 HOH B 37 637 101 HOH HOH . 
O 6 HOH B 38 638 17 HOH HOH . 
O 6 HOH B 39 639 246 HOH HOH . 
O 6 HOH B 40 640 24 HOH HOH . 
O 6 HOH B 41 641 244 HOH HOH . 
O 6 HOH B 42 642 194 HOH HOH . 
O 6 HOH B 43 643 88 HOH HOH . 
O 6 HOH B 44 644 18 HOH HOH . 
O 6 HOH B 45 645 169 HOH HOH . 
O 6 HOH B 46 646 247 HOH HOH . 
O 6 HOH B 47 647 171 HOH HOH . 
O 6 HOH B 48 648 207 HOH HOH . 
O 6 HOH B 49 649 224 HOH HOH . 
O 6 HOH B 50 650 117 HOH HOH . 
O 6 HOH B 51 651 216 HOH HOH . 
O 6 HOH B 52 652 105 HOH HOH . 
O 6 HOH B 53 653 103 HOH HOH . 
O 6 HOH B 54 654 44 HOH HOH . 
O 6 HOH B 55 655 259 HOH HOH . 
O 6 HOH B 56 656 251 HOH HOH . 
O 6 HOH B 57 657 80 HOH HOH . 
O 6 HOH B 58 658 110 HOH HOH . 
O 6 HOH B 59 659 71 HOH HOH . 
O 6 HOH B 60 660 141 HOH HOH . 
O 6 HOH B 61 661 154 HOH HOH . 
O 6 HOH B 62 662 30 HOH HOH . 
O 6 HOH B 63 663 170 HOH HOH . 
O 6 HOH B 64 664 149 HOH HOH . 
O 6 HOH B 65 665 121 HOH HOH . 
O 6 HOH B 66 666 19 HOH HOH . 
O 6 HOH B 67 667 178 HOH HOH . 
O 6 HOH B 68 668 133 HOH HOH . 
O 6 HOH B 69 669 87 HOH HOH . 
O 6 HOH B 70 670 99 HOH HOH . 
O 6 HOH B 71 671 218 HOH HOH . 
O 6 HOH B 72 672 144 HOH HOH . 
O 6 HOH B 73 673 156 HOH HOH . 
O 6 HOH B 74 674 6 HOH HOH . 
O 6 HOH B 75 675 125 HOH HOH . 
O 6 HOH B 76 676 239 HOH HOH . 
O 6 HOH B 77 677 139 HOH HOH . 
O 6 HOH B 78 678 64 HOH HOH . 
O 6 HOH B 79 679 229 HOH HOH . 
O 6 HOH B 80 680 109 HOH HOH . 
P 6 HOH C 1 601 227 HOH HOH . 
P 6 HOH C 2 602 196 HOH HOH . 
P 6 HOH C 3 603 208 HOH HOH . 
P 6 HOH C 4 604 257 HOH HOH . 
P 6 HOH C 5 605 202 HOH HOH . 
P 6 HOH C 6 606 195 HOH HOH . 
P 6 HOH C 7 607 260 HOH HOH . 
P 6 HOH C 8 608 249 HOH HOH . 
P 6 HOH C 9 609 255 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 5 -12.163 10.046 -21.795 1 20.26 ? C1 EDO 504 A 1 
HETATM 2 O O1 EDO . . . G 5 -13.44 9.414 -21.951 1 18.1 ? O1 EDO 504 A 1 
HETATM 3 C C2 EDO . . . G 5 -11.941 10.403 -20.321 1 20.58 ? C2 EDO 504 A 1 
HETATM 4 O O2 EDO . . . G 5 -11.728 9.206 -19.549 1 18.93 ? O2 EDO 504 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    51 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#