data_5X1O # _model_server_result.job_id MLFQaf0nkRGZjX6qOo0btg _model_server_result.datetime_utc '2024-11-14 06:45:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x1o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5X1O # _exptl.entry_id 5X1O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 420.096 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5X1O _cell.length_a 34.616 _cell.length_b 67.346 _cell.length_c 122.196 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X1O _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 69 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 69 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 69 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 69 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.052 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H15 O15 P3' _chem_comp.formula_weight 420.096 _chem_comp.id I3P _chem_comp.mon_nstd_flag . _chem_comp.name D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 I3P sing 152 n n C1 C6 I3P sing 153 n n C1 O1 I3P sing 154 n n C1 H1 I3P sing 155 n n C2 C3 I3P sing 156 n n C2 O2 I3P sing 157 n n C2 H2 I3P sing 158 n n C3 C4 I3P sing 159 n n C3 O3 I3P sing 160 n n C3 H3 I3P sing 161 n n C4 C5 I3P sing 162 n n C4 O4 I3P sing 163 n n C4 H4 I3P sing 164 n n C5 C6 I3P sing 165 n n C5 O5 I3P sing 166 n n C5 H5 I3P sing 167 n n C6 O6 I3P sing 168 n n C6 H6 I3P sing 169 n n O1 P1 I3P sing 170 n n O2 HO2 I3P sing 171 n n O3 HO3 I3P sing 172 n n O4 P4 I3P sing 173 n n O5 P5 I3P sing 174 n n O6 HO6 I3P sing 175 n n P1 O11 I3P doub 176 n n P1 O12 I3P sing 177 n n P1 O13 I3P sing 178 n n O12 HO12 I3P sing 179 n n O13 HO13 I3P sing 180 n n P4 O41 I3P doub 181 n n P4 O42 I3P sing 182 n n P4 O43 I3P sing 183 n n O42 HO42 I3P sing 184 n n O43 HO43 I3P sing 185 n n P5 O51 I3P doub 186 n n P5 O52 I3P sing 187 n n P5 O53 I3P sing 188 n n O52 HO52 I3P sing 189 n n O53 HO53 I3P sing 190 n n # _atom_sites.entry_id 5X1O _atom_sites.fract_transf_matrix[1][1] 0.028888 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014849 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008184 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 I3P A 1 201 2 I3P I3P . D 2 I3P A 1 202 4 I3P I3P . E 3 HOH A 1 301 42 HOH HOH . E 3 HOH A 2 302 69 HOH HOH . E 3 HOH A 3 303 49 HOH HOH . E 3 HOH A 4 304 31 HOH HOH . E 3 HOH A 5 305 106 HOH HOH . E 3 HOH A 6 306 100 HOH HOH . E 3 HOH A 7 307 29 HOH HOH . E 3 HOH A 8 308 169 HOH HOH . E 3 HOH A 9 309 39 HOH HOH . E 3 HOH A 10 310 161 HOH HOH . E 3 HOH A 11 311 3 HOH HOH . E 3 HOH A 12 312 134 HOH HOH . E 3 HOH A 13 313 118 HOH HOH . E 3 HOH A 14 314 184 HOH HOH . E 3 HOH A 15 315 120 HOH HOH . E 3 HOH A 16 316 46 HOH HOH . E 3 HOH A 17 317 55 HOH HOH . E 3 HOH A 18 318 22 HOH HOH . E 3 HOH A 19 319 43 HOH HOH . E 3 HOH A 20 320 40 HOH HOH . E 3 HOH A 21 321 50 HOH HOH . E 3 HOH A 22 322 180 HOH HOH . E 3 HOH A 23 323 48 HOH HOH . E 3 HOH A 24 324 92 HOH HOH . E 3 HOH A 25 325 164 HOH HOH . E 3 HOH A 26 326 192 HOH HOH . E 3 HOH A 27 327 157 HOH HOH . E 3 HOH A 28 328 34 HOH HOH . E 3 HOH A 29 329 132 HOH HOH . E 3 HOH A 30 330 88 HOH HOH . E 3 HOH A 31 331 8 HOH HOH . E 3 HOH A 32 332 57 HOH HOH . E 3 HOH A 33 333 54 HOH HOH . E 3 HOH A 34 334 79 HOH HOH . E 3 HOH A 35 335 20 HOH HOH . E 3 HOH A 36 336 16 HOH HOH . E 3 HOH A 37 337 113 HOH HOH . E 3 HOH A 38 338 56 HOH HOH . E 3 HOH A 39 339 33 HOH HOH . E 3 HOH A 40 340 36 HOH HOH . E 3 HOH A 41 341 104 HOH HOH . E 3 HOH A 42 342 186 HOH HOH . E 3 HOH A 43 343 77 HOH HOH . E 3 HOH A 44 344 37 HOH HOH . E 3 HOH A 45 345 112 HOH HOH . E 3 HOH A 46 346 45 HOH HOH . E 3 HOH A 47 347 99 HOH HOH . E 3 HOH A 48 348 189 HOH HOH . E 3 HOH A 49 349 121 HOH HOH . E 3 HOH A 50 350 32 HOH HOH . E 3 HOH A 51 351 141 HOH HOH . E 3 HOH A 52 352 60 HOH HOH . E 3 HOH A 53 353 90 HOH HOH . E 3 HOH A 54 354 44 HOH HOH . E 3 HOH A 55 355 197 HOH HOH . E 3 HOH A 56 356 30 HOH HOH . E 3 HOH A 57 357 179 HOH HOH . E 3 HOH A 58 358 85 HOH HOH . E 3 HOH A 59 359 156 HOH HOH . E 3 HOH A 60 360 194 HOH HOH . E 3 HOH A 61 361 66 HOH HOH . E 3 HOH A 62 362 53 HOH HOH . E 3 HOH A 63 363 38 HOH HOH . E 3 HOH A 64 364 168 HOH HOH . E 3 HOH A 65 365 51 HOH HOH . E 3 HOH A 66 366 65 HOH HOH . E 3 HOH A 67 367 133 HOH HOH . E 3 HOH A 68 368 125 HOH HOH . E 3 HOH A 69 369 188 HOH HOH . E 3 HOH A 70 370 102 HOH HOH . E 3 HOH A 71 371 185 HOH HOH . E 3 HOH A 72 372 129 HOH HOH . E 3 HOH A 73 373 190 HOH HOH . E 3 HOH A 74 374 127 HOH HOH . E 3 HOH A 75 375 159 HOH HOH . E 3 HOH A 76 376 155 HOH HOH . E 3 HOH A 77 377 52 HOH HOH . E 3 HOH A 78 378 67 HOH HOH . E 3 HOH A 79 379 105 HOH HOH . E 3 HOH A 80 380 108 HOH HOH . E 3 HOH A 81 381 131 HOH HOH . E 3 HOH A 82 382 91 HOH HOH . E 3 HOH A 83 383 114 HOH HOH . E 3 HOH A 84 384 196 HOH HOH . E 3 HOH A 85 385 150 HOH HOH . E 3 HOH A 86 386 116 HOH HOH . E 3 HOH A 87 387 47 HOH HOH . E 3 HOH A 88 388 87 HOH HOH . E 3 HOH A 89 389 89 HOH HOH . E 3 HOH A 90 390 78 HOH HOH . E 3 HOH A 91 391 148 HOH HOH . E 3 HOH A 92 392 86 HOH HOH . E 3 HOH A 93 393 151 HOH HOH . E 3 HOH A 94 394 165 HOH HOH . E 3 HOH A 95 395 153 HOH HOH . F 3 HOH B 1 201 167 HOH HOH . F 3 HOH B 2 202 110 HOH HOH . F 3 HOH B 3 203 126 HOH HOH . F 3 HOH B 4 204 61 HOH HOH . F 3 HOH B 5 205 187 HOH HOH . F 3 HOH B 6 206 28 HOH HOH . F 3 HOH B 7 207 119 HOH HOH . F 3 HOH B 8 208 176 HOH HOH . F 3 HOH B 9 209 59 HOH HOH . F 3 HOH B 10 210 21 HOH HOH . F 3 HOH B 11 211 107 HOH HOH . F 3 HOH B 12 212 73 HOH HOH . F 3 HOH B 13 213 117 HOH HOH . F 3 HOH B 14 214 111 HOH HOH . F 3 HOH B 15 215 123 HOH HOH . F 3 HOH B 16 216 9 HOH HOH . F 3 HOH B 17 217 160 HOH HOH . F 3 HOH B 18 218 95 HOH HOH . F 3 HOH B 19 219 193 HOH HOH . F 3 HOH B 20 220 10 HOH HOH . F 3 HOH B 21 221 139 HOH HOH . F 3 HOH B 22 222 84 HOH HOH . F 3 HOH B 23 223 6 HOH HOH . F 3 HOH B 24 224 72 HOH HOH . F 3 HOH B 25 225 25 HOH HOH . F 3 HOH B 26 226 63 HOH HOH . F 3 HOH B 27 227 76 HOH HOH . F 3 HOH B 28 228 64 HOH HOH . F 3 HOH B 29 229 2 HOH HOH . F 3 HOH B 30 230 5 HOH HOH . F 3 HOH B 31 231 1 HOH HOH . F 3 HOH B 32 232 15 HOH HOH . F 3 HOH B 33 233 13 HOH HOH . F 3 HOH B 34 234 142 HOH HOH . F 3 HOH B 35 235 146 HOH HOH . F 3 HOH B 36 236 14 HOH HOH . F 3 HOH B 37 237 171 HOH HOH . F 3 HOH B 38 238 12 HOH HOH . F 3 HOH B 39 239 35 HOH HOH . F 3 HOH B 40 240 23 HOH HOH . F 3 HOH B 41 241 18 HOH HOH . F 3 HOH B 42 242 41 HOH HOH . F 3 HOH B 43 243 163 HOH HOH . F 3 HOH B 44 244 97 HOH HOH . F 3 HOH B 45 245 75 HOH HOH . F 3 HOH B 46 246 98 HOH HOH . F 3 HOH B 47 247 4 HOH HOH . F 3 HOH B 48 248 183 HOH HOH . F 3 HOH B 49 249 94 HOH HOH . F 3 HOH B 50 250 96 HOH HOH . F 3 HOH B 51 251 147 HOH HOH . F 3 HOH B 52 252 101 HOH HOH . F 3 HOH B 53 253 149 HOH HOH . F 3 HOH B 54 254 138 HOH HOH . F 3 HOH B 55 255 136 HOH HOH . F 3 HOH B 56 256 103 HOH HOH . F 3 HOH B 57 257 173 HOH HOH . F 3 HOH B 58 258 80 HOH HOH . F 3 HOH B 59 259 140 HOH HOH . F 3 HOH B 60 260 17 HOH HOH . F 3 HOH B 61 261 172 HOH HOH . F 3 HOH B 62 262 82 HOH HOH . F 3 HOH B 63 263 62 HOH HOH . F 3 HOH B 64 264 7 HOH HOH . F 3 HOH B 65 265 177 HOH HOH . F 3 HOH B 66 266 24 HOH HOH . F 3 HOH B 67 267 195 HOH HOH . F 3 HOH B 68 268 83 HOH HOH . F 3 HOH B 69 269 178 HOH HOH . F 3 HOH B 70 270 11 HOH HOH . F 3 HOH B 71 271 74 HOH HOH . F 3 HOH B 72 272 166 HOH HOH . F 3 HOH B 73 273 130 HOH HOH . F 3 HOH B 74 274 122 HOH HOH . F 3 HOH B 75 275 174 HOH HOH . F 3 HOH B 76 276 124 HOH HOH . F 3 HOH B 77 277 26 HOH HOH . F 3 HOH B 78 278 170 HOH HOH . F 3 HOH B 79 279 143 HOH HOH . F 3 HOH B 80 280 58 HOH HOH . F 3 HOH B 81 281 145 HOH HOH . F 3 HOH B 82 282 152 HOH HOH . F 3 HOH B 83 283 93 HOH HOH . F 3 HOH B 84 284 109 HOH HOH . F 3 HOH B 85 285 68 HOH HOH . F 3 HOH B 86 286 154 HOH HOH . F 3 HOH B 87 287 70 HOH HOH . F 3 HOH B 88 288 144 HOH HOH . F 3 HOH B 89 289 158 HOH HOH . F 3 HOH B 90 290 135 HOH HOH . F 3 HOH B 91 291 19 HOH HOH . F 3 HOH B 92 292 81 HOH HOH . F 3 HOH B 93 293 27 HOH HOH . F 3 HOH B 94 294 181 HOH HOH . F 3 HOH B 95 295 71 HOH HOH . F 3 HOH B 96 296 191 HOH HOH . F 3 HOH B 97 297 182 HOH HOH . F 3 HOH B 98 298 162 HOH HOH . F 3 HOH B 99 299 175 HOH HOH . F 3 HOH B 100 300 115 HOH HOH . F 3 HOH B 101 301 137 HOH HOH . F 3 HOH B 102 302 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I3P . . . D 2 38.924 16.867 258.727 1 112.14 ? C1 I3P 202 A 1 HETATM 2 C C2 I3P . . . D 2 39.133 17.1 260.243 1 111.49 ? C2 I3P 202 A 1 HETATM 3 C C3 I3P . . . D 2 37.985 17.768 261.034 1 114.71 ? C3 I3P 202 A 1 HETATM 4 C C4 I3P . . . D 2 36.779 18.317 260.234 1 120.81 ? C4 I3P 202 A 1 HETATM 5 C C5 I3P . . . D 2 36.392 17.582 258.916 1 115.29 ? C5 I3P 202 A 1 HETATM 6 C C6 I3P . . . D 2 37.464 16.684 258.254 1 113.4 ? C6 I3P 202 A 1 HETATM 7 O O1 I3P . . . D 2 39.803 15.811 258.334 1 112.3 ? O1 I3P 202 A 1 HETATM 8 O O2 I3P . . . D 2 39.483 15.891 260.882 1 110.44 ? O2 I3P 202 A 1 HETATM 9 O O3 I3P . . . D 2 37.522 16.928 262.076 1 112.1 ? O3 I3P 202 A 1 HETATM 10 O O4 I3P . . . D 2 37.007 19.704 260.017 1 131.44 ? O4 I3P 202 A 1 HETATM 11 O O5 I3P . . . D 2 35.277 16.737 259.154 1 115.22 ? O5 I3P 202 A 1 HETATM 12 O O6 I3P . . . D 2 37.423 16.924 256.863 1 112.59 ? O6 I3P 202 A 1 HETATM 13 P P1 I3P . . . D 2 39.46 14.359 257.593 1 111.12 ? P1 I3P 202 A 1 HETATM 14 O O11 I3P . . . D 2 39.049 14.548 256.149 1 107.39 ? O11 I3P 202 A 1 HETATM 15 O O12 I3P . . . D 2 40.737 13.547 257.619 1 113.18 ? O12 I3P 202 A 1 HETATM 16 O O13 I3P . . . D 2 38.387 13.573 258.313 1 107.99 ? O13 I3P 202 A 1 HETATM 17 P P4 I3P . . . D 2 37.046 20.804 261.27 1 136.19 ? P4 I3P 202 A 1 HETATM 18 O O41 I3P . . . D 2 35.86 21.735 261.153 1 137.47 ? O41 I3P 202 A 1 HETATM 19 O O42 I3P . . . D 2 38.316 21.624 261.192 1 130.8 ? O42 I3P 202 A 1 HETATM 20 O O43 I3P . . . D 2 36.97 20.141 262.63 1 138.2 ? O43 I3P 202 A 1 HETATM 21 P P5 I3P . . . D 2 33.714 17.14 258.778 1 112.05 ? P5 I3P 202 A 1 HETATM 22 O O51 I3P . . . D 2 33.693 18.176 257.677 1 111.4 ? O51 I3P 202 A 1 HETATM 23 O O52 I3P . . . D 2 33.04 17.662 260.021 1 111.65 ? O52 I3P 202 A 1 HETATM 24 O O53 I3P . . . D 2 32.932 15.924 258.333 1 111.1 ? O53 I3P 202 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #