data_5X1Y # _model_server_result.job_id iJ56Ba3rhnZotnpu2stclQ _model_server_result.datetime_utc '2025-02-05 10:45:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x1y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 5X1Y # _exptl.entry_id 5X1Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.62 _cell.angle_gamma 90 _cell.entry_id 5X1Y _cell.length_a 236.38 _cell.length_b 150.27 _cell.length_c 122.78 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X1Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G,I 1 1 B,E,H,K 2 1 D,F,J,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 122 B CYS 122 1_555 A SG CYS 127 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 B SG CYS 122 A CYS 122 1_555 B SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 C SG CYS 122 C CYS 122 1_555 C SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 D SG CYS 122 D CYS 122 1_555 D SG CYS 127 D CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf5 E SG CYS 122 E CYS 122 1_555 E SG CYS 127 E CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 F SG CYS 122 F CYS 122 1_555 F SG CYS 127 F CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 5X1Y _atom_sites.fract_transf_matrix[1][1] 0.00423 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000194 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008153 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 FAD B 1 601 2 FAD FAD . H 2 FAD A 1 601 1 FAD FAD . I 2 FAD C 1 601 4 FAD FAD . J 2 FAD D 1 601 3 FAD FAD . K 2 FAD E 1 601 5 FAD FAD . L 2 FAD F 1 601 6 FAD FAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . G 2 -15.577 -50.894 -7.299 1 33.89 ? PA FAD 601 B 1 HETATM 2 O O1A FAD . . . G 2 -16.847 -51.33 -7.988 1 47.98 ? O1A FAD 601 B 1 HETATM 3 O O2A FAD . . . G 2 -15.138 -51.921 -6.278 1 40.71 ? O2A FAD 601 B 1 HETATM 4 O O5B FAD . . . G 2 -14.42 -50.731 -8.402 1 35.57 ? O5B FAD 601 B 1 HETATM 5 C C5B FAD . . . G 2 -13.052 -50.753 -8.002 1 51.83 ? C5B FAD 601 B 1 HETATM 6 C C4B FAD . . . G 2 -12.187 -51.071 -9.215 1 54.13 ? C4B FAD 601 B 1 HETATM 7 O O4B FAD . . . G 2 -10.98 -50.309 -9.161 1 50.22 ? O4B FAD 601 B 1 HETATM 8 C C3B FAD . . . G 2 -11.78 -52.538 -9.321 1 51.77 ? C3B FAD 601 B 1 HETATM 9 O O3B FAD . . . G 2 -12.318 -53.101 -10.521 1 60.18 ? O3B FAD 601 B 1 HETATM 10 C C2B FAD . . . G 2 -10.266 -52.532 -9.354 1 48.24 ? C2B FAD 601 B 1 HETATM 11 O O2B FAD . . . G 2 -9.765 -53.437 -10.34 1 52.67 ? O2B FAD 601 B 1 HETATM 12 C C1B FAD . . . G 2 -9.912 -51.092 -9.694 1 54.49 ? C1B FAD 601 B 1 HETATM 13 N N9A FAD . . . G 2 -8.618 -50.661 -9.109 1 55.74 ? N9A FAD 601 B 1 HETATM 14 C C8A FAD . . . G 2 -8.302 -50.699 -7.807 1 57.63 ? C8A FAD 601 B 1 HETATM 15 N N7A FAD . . . G 2 -7.046 -50.226 -7.605 1 64.33 ? N7A FAD 601 B 1 HETATM 16 C C5A FAD . . . G 2 -6.546 -49.867 -8.797 1 52.04 ? C5A FAD 601 B 1 HETATM 17 C C6A FAD . . . G 2 -5.276 -49.296 -9.286 1 53.38 ? C6A FAD 601 B 1 HETATM 18 N N6A FAD . . . G 2 -4.272 -49.009 -8.425 1 51.69 ? N6A FAD 601 B 1 HETATM 19 N N1A FAD . . . G 2 -5.154 -49.079 -10.612 1 52.3 ? N1A FAD 601 B 1 HETATM 20 C C2A FAD . . . G 2 -6.147 -49.367 -11.473 1 47.68 ? C2A FAD 601 B 1 HETATM 21 N N3A FAD . . . G 2 -7.326 -49.885 -11.087 1 47.95 ? N3A FAD 601 B 1 HETATM 22 C C4A FAD . . . G 2 -7.585 -50.155 -9.787 1 49 ? C4A FAD 601 B 1 HETATM 23 N N1 FAD . . . G 2 -23.823 -52.229 -2.879 1 45.75 ? N1 FAD 601 B 1 HETATM 24 C C2 FAD . . . G 2 -25.149 -51.978 -3.058 1 43.25 ? C2 FAD 601 B 1 HETATM 25 O O2 FAD . . . G 2 -25.503 -50.831 -3.406 1 46.85 ? O2 FAD 601 B 1 HETATM 26 N N3 FAD . . . G 2 -26.101 -52.91 -2.874 1 41.92 ? N3 FAD 601 B 1 HETATM 27 C C4 FAD . . . G 2 -25.796 -54.159 -2.498 1 47.01 ? C4 FAD 601 B 1 HETATM 28 O O4 FAD . . . G 2 -26.684 -55.024 -2.326 1 40.93 ? O4 FAD 601 B 1 HETATM 29 C C4X FAD . . . G 2 -24.371 -54.505 -2.286 1 46.32 ? C4X FAD 601 B 1 HETATM 30 N N5 FAD . . . G 2 -24.006 -55.74 -1.91 1 51 ? N5 FAD 601 B 1 HETATM 31 C C5X FAD . . . G 2 -22.704 -56.04 -1.718 1 48.81 ? C5X FAD 601 B 1 HETATM 32 C C6 FAD . . . G 2 -22.384 -57.335 -1.33 1 56.49 ? C6 FAD 601 B 1 HETATM 33 C C7 FAD . . . G 2 -21.065 -57.703 -1.118 1 47.31 ? C7 FAD 601 B 1 HETATM 34 C C7M FAD . . . G 2 -20.753 -59.114 -0.699 1 65.84 ? C7M FAD 601 B 1 HETATM 35 C C8 FAD . . . G 2 -19.986 -56.705 -1.312 1 38.32 ? C8 FAD 601 B 1 HETATM 36 C C8M FAD . . . G 2 -18.541 -57.06 -1.097 1 51.24 ? C8M FAD 601 B 1 HETATM 37 C C9 FAD . . . G 2 -20.299 -55.409 -1.699 1 46.82 ? C9 FAD 601 B 1 HETATM 38 C C9A FAD . . . G 2 -21.624 -55.023 -1.914 1 47.65 ? C9A FAD 601 B 1 HETATM 39 N N10 FAD . . . G 2 -21.993 -53.707 -2.318 1 44.36 ? N10 FAD 601 B 1 HETATM 40 C C10 FAD . . . G 2 -23.366 -53.443 -2.502 1 44.11 ? C10 FAD 601 B 1 HETATM 41 C C1' FAD . . . G 2 -21.048 -52.598 -2.527 1 41.86 ? C1' FAD 601 B 1 HETATM 42 C C2' FAD . . . G 2 -20.88 -52.228 -3.992 1 41.67 ? C2' FAD 601 B 1 HETATM 43 O O2' FAD . . . G 2 -20.432 -53.353 -4.755 1 36.9 ? O2' FAD 601 B 1 HETATM 44 C C3' FAD . . . G 2 -19.853 -51.11 -4.082 1 41.2 ? C3' FAD 601 B 1 HETATM 45 O O3' FAD . . . G 2 -20.248 -50.047 -3.207 1 49.87 ? O3' FAD 601 B 1 HETATM 46 C C4' FAD . . . G 2 -19.711 -50.576 -5.499 1 44.28 ? C4' FAD 601 B 1 HETATM 47 O O4' FAD . . . G 2 -19.192 -51.599 -6.356 1 48.54 ? O4' FAD 601 B 1 HETATM 48 C C5' FAD . . . G 2 -18.786 -49.364 -5.496 1 40.42 ? C5' FAD 601 B 1 HETATM 49 O O5' FAD . . . G 2 -18.365 -49.065 -6.82 1 35.53 ? O5' FAD 601 B 1 HETATM 50 P P FAD . . . G 2 -16.909 -48.44 -7.06 1 46.14 ? P FAD 601 B 1 HETATM 51 O O1P FAD . . . G 2 -16.706 -48.165 -8.53 1 52.01 ? O1P FAD 601 B 1 HETATM 52 O O2P FAD . . . G 2 -16.771 -47.182 -6.245 1 37.33 ? O2P FAD 601 B 1 HETATM 53 O O3P FAD . . . G 2 -15.814 -49.494 -6.544 1 40.7 ? O3P FAD 601 B 1 HETATM 54 H H51A FAD . . . G 2 -12.903 -51.511 -7.231 1 62.19 ? H51A FAD 601 B 1 HETATM 55 H H52A FAD . . . G 2 -12.771 -49.782 -7.589 1 62.19 ? H52A FAD 601 B 1 HETATM 56 H H4B FAD . . . G 2 -12.749 -50.802 -10.12 1 64.96 ? H4B FAD 601 B 1 HETATM 57 H H3B FAD . . . G 2 -12.131 -53.087 -8.435 1 62.12 ? H3B FAD 601 B 1 HETATM 58 H HO3A FAD . . . G 2 -12.026 -54.019 -10.606 1 72.22 ? HO3A FAD 601 B 1 HETATM 59 H H2B FAD . . . G 2 -9.874 -52.783 -8.358 1 57.89 ? H2B FAD 601 B 1 HETATM 60 H HO2A FAD . . . G 2 -10.003 -54.342 -10.098 1 63.2 ? HO2A FAD 601 B 1 HETATM 61 H H1B FAD . . . G 2 -9.881 -50.985 -10.787 1 65.38 ? H1B FAD 601 B 1 HETATM 62 H H8A FAD . . . G 2 -8.957 -51.061 -7.024 1 69.15 ? H8A FAD 601 B 1 HETATM 63 H H61A FAD . . . G 2 -3.407 -48.62 -8.77 1 62.03 ? H61A FAD 601 B 1 HETATM 64 H H62A FAD . . . G 2 -4.389 -49.184 -7.437 1 62.03 ? H62A FAD 601 B 1 HETATM 65 H H2A FAD . . . G 2 -5.992 -49.166 -12.525 1 57.21 ? H2A FAD 601 B 1 HETATM 66 H HN3 FAD . . . G 2 -27.097 -52.655 -3.026 1 50.3 ? HN3 FAD 601 B 1 HETATM 67 H H6 FAD . . . G 2 -23.174 -58.063 -1.193 1 67.79 ? H6 FAD 601 B 1 HETATM 68 H HM71 FAD . . . G 2 -21.562 -59.502 -0.137 1 79.01 ? HM71 FAD 601 B 1 HETATM 69 H HM72 FAD . . . G 2 -20.602 -59.712 -1.56 1 79.01 ? HM72 FAD 601 B 1 HETATM 70 H HM73 FAD . . . G 2 -19.876 -59.12 -0.106 1 79.01 ? HM73 FAD 601 B 1 HETATM 71 H HM81 FAD . . . G 2 -18.394 -58.087 -1.312 1 61.49 ? HM81 FAD 601 B 1 HETATM 72 H HM82 FAD . . . G 2 -17.934 -56.475 -1.737 1 61.49 ? HM82 FAD 601 B 1 HETATM 73 H HM83 FAD . . . G 2 -18.277 -56.87 -0.089 1 61.49 ? HM83 FAD 601 B 1 HETATM 74 H H9 FAD . . . G 2 -19.504 -54.686 -1.834 1 56.19 ? H9 FAD 601 B 1 HETATM 75 H "H1'1" FAD . . . G 2 -20.075 -52.877 -2.116 1 50.24 ? "H1'1" FAD 601 B 1 HETATM 76 H "H1'2" FAD . . . G 2 -21.399 -51.723 -1.976 1 50.24 ? "H1'2" FAD 601 B 1 HETATM 77 H H2' FAD . . . G 2 -21.84 -51.864 -4.382 1 50.01 ? H2' FAD 601 B 1 HETATM 78 H HO2' FAD . . . G 2 -21.085 -54.064 -4.695 1 44.28 ? HO2' FAD 601 B 1 HETATM 79 H H3' FAD . . . G 2 -18.88 -51.507 -3.761 1 49.44 ? H3' FAD 601 B 1 HETATM 80 H H4' FAD . . . G 2 -20.701 -50.26 -5.855 1 53.14 ? H4' FAD 601 B 1 HETATM 81 H HO4' FAD . . . G 2 -19.118 -51.257 -7.258 1 58.24 ? HO4' FAD 601 B 1 HETATM 82 H "H5'1" FAD . . . G 2 -19.31 -48.504 -5.074 1 48.5 ? "H5'1" FAD 601 B 1 HETATM 83 H "H5'2" FAD . . . G 2 -17.915 -49.569 -4.871 1 48.5 ? "H5'2" FAD 601 B 1 # _model_server_stats.io_time_ms 131 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 83 #