data_5X1Y # _model_server_result.job_id zHoXxdqoi_2SaY4T3dA_fA _model_server_result.datetime_utc '2025-02-05 10:53:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x1y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":601}' # _entry.id 5X1Y # _exptl.entry_id 5X1Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.62 _cell.angle_gamma 90 _cell.entry_id 5X1Y _cell.length_a 236.38 _cell.length_b 150.27 _cell.length_c 122.78 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X1Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G,I 1 1 B,E,H,K 2 1 D,F,J,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 122 B CYS 122 1_555 A SG CYS 127 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 B SG CYS 122 A CYS 122 1_555 B SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 C SG CYS 122 C CYS 122 1_555 C SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 D SG CYS 122 D CYS 122 1_555 D SG CYS 127 D CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf5 E SG CYS 122 E CYS 122 1_555 E SG CYS 127 E CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 F SG CYS 122 F CYS 122 1_555 F SG CYS 127 F CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 5X1Y _atom_sites.fract_transf_matrix[1][1] 0.00423 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000194 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008153 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 FAD B 1 601 2 FAD FAD . H 2 FAD A 1 601 1 FAD FAD . I 2 FAD C 1 601 4 FAD FAD . J 2 FAD D 1 601 3 FAD FAD . K 2 FAD E 1 601 5 FAD FAD . L 2 FAD F 1 601 6 FAD FAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . H 2 -12.488 -57.747 -40.578 1 50.31 ? PA FAD 601 A 1 HETATM 2 O O1A FAD . . . H 2 -12.972 -58.833 -39.649 1 57.7 ? O1A FAD 601 A 1 HETATM 3 O O2A FAD . . . H 2 -13.602 -57.308 -41.502 1 44.88 ? O2A FAD 601 A 1 HETATM 4 O O5B FAD . . . H 2 -11.995 -56.48 -39.725 1 37.86 ? O5B FAD 601 A 1 HETATM 5 C C5B FAD . . . H 2 -12.691 -55.252 -39.902 1 53.71 ? C5B FAD 601 A 1 HETATM 6 C C4B FAD . . . H 2 -12.441 -54.343 -38.713 1 43.46 ? C4B FAD 601 A 1 HETATM 7 O O4B FAD . . . H 2 -11.219 -53.633 -38.878 1 45.38 ? O4B FAD 601 A 1 HETATM 8 C C3B FAD . . . H 2 -13.532 -53.296 -38.565 1 46.78 ? C3B FAD 601 A 1 HETATM 9 O O3B FAD . . . H 2 -14.517 -53.725 -37.618 1 66.42 ? O3B FAD 601 A 1 HETATM 10 C C2B FAD . . . H 2 -12.816 -52.029 -38.132 1 47.8 ? C2B FAD 601 A 1 HETATM 11 O O2B FAD . . . H 2 -13.133 -51.666 -36.785 1 62.16 ? O2B FAD 601 A 1 HETATM 12 C C1B FAD . . . H 2 -11.334 -52.349 -38.258 1 54.92 ? C1B FAD 601 A 1 HETATM 13 N N9A FAD . . . H 2 -10.664 -51.317 -39.082 1 53.53 ? N9A FAD 601 A 1 HETATM 14 C C8A FAD . . . H 2 -10.733 -51.249 -40.421 1 51.77 ? C8A FAD 601 A 1 HETATM 15 N N7A FAD . . . H 2 -10.01 -50.194 -40.878 1 51.54 ? N7A FAD 601 A 1 HETATM 16 C C5A FAD . . . H 2 -9.464 -49.576 -39.815 1 43.27 ? C5A FAD 601 A 1 HETATM 17 C C6A FAD . . . H 2 -8.592 -48.403 -39.593 1 51.12 ? C6A FAD 601 A 1 HETATM 18 N N6A FAD . . . H 2 -8.16 -47.672 -40.65 1 64.28 ? N6A FAD 601 A 1 HETATM 19 N N1A FAD . . . H 2 -8.249 -48.094 -38.319 1 46.55 ? N1A FAD 601 A 1 HETATM 20 C C2A FAD . . . H 2 -8.675 -48.818 -37.267 1 43.49 ? C2A FAD 601 A 1 HETATM 21 N N3A FAD . . . H 2 -9.473 -49.893 -37.41 1 49.37 ? N3A FAD 601 A 1 HETATM 22 C C4A FAD . . . H 2 -9.895 -50.319 -38.628 1 48.2 ? C4A FAD 601 A 1 HETATM 23 N N1 FAD . . . H 2 -16.279 -65.369 -44.684 1 42.36 ? N1 FAD 601 A 1 HETATM 24 C C2 FAD . . . H 2 -16.36 -66.726 -44.583 1 46.69 ? C2 FAD 601 A 1 HETATM 25 O O2 FAD . . . H 2 -15.324 -67.381 -44.334 1 50.72 ? O2 FAD 601 A 1 HETATM 26 N N3 FAD . . . H 2 -17.511 -67.402 -44.74 1 50.91 ? N3 FAD 601 A 1 HETATM 27 C C4 FAD . . . H 2 -18.659 -66.772 -45.008 1 52.5 ? C4 FAD 601 A 1 HETATM 28 O O4 FAD . . . H 2 -19.72 -67.415 -45.154 1 46.83 ? O4 FAD 601 A 1 HETATM 29 C C4X FAD . . . H 2 -18.65 -65.295 -45.131 1 52.94 ? C4X FAD 601 A 1 HETATM 30 N N5 FAD . . . H 2 -19.779 -64.619 -45.4 1 54.21 ? N5 FAD 601 A 1 HETATM 31 C C5X FAD . . . H 2 -19.756 -63.273 -45.512 1 54.64 ? C5X FAD 601 A 1 HETATM 32 C C6 FAD . . . H 2 -20.956 -62.625 -45.791 1 54.87 ? C6 FAD 601 A 1 HETATM 33 C C7 FAD . . . H 2 -20.991 -61.243 -45.915 1 48.87 ? C7 FAD 601 A 1 HETATM 34 C C7M FAD . . . H 2 -22.285 -60.545 -46.226 1 40.96 ? C7M FAD 601 A 1 HETATM 35 C C8 FAD . . . H 2 -19.743 -60.458 -45.751 1 52.92 ? C8 FAD 601 A 1 HETATM 36 C C8M FAD . . . H 2 -19.736 -58.958 -45.877 1 57.22 ? C8M FAD 601 A 1 HETATM 37 C C9 FAD . . . H 2 -18.545 -61.1 -45.473 1 59 ? C9 FAD 601 A 1 HETATM 38 C C9A FAD . . . H 2 -18.487 -62.488 -45.344 1 49.65 ? C9A FAD 601 A 1 HETATM 39 N N10 FAD . . . H 2 -17.276 -63.181 -45.048 1 44.61 ? N10 FAD 601 A 1 HETATM 40 C C10 FAD . . . H 2 -17.356 -64.593 -44.95 1 47.66 ? C10 FAD 601 A 1 HETATM 41 C C1' FAD . . . H 2 -15.954 -62.532 -44.883 1 45.77 ? C1' FAD 601 A 1 HETATM 42 C C2' FAD . . . H 2 -15.415 -62.505 -43.456 1 42.23 ? C2' FAD 601 A 1 HETATM 43 O O2' FAD . . . H 2 -16.132 -61.553 -42.658 1 40.35 ? O2' FAD 601 A 1 HETATM 44 C C3' FAD . . . H 2 -13.951 -62.084 -43.507 1 37.7 ? C3' FAD 601 A 1 HETATM 45 O O3' FAD . . . H 2 -13.19 -63.021 -44.276 1 38.48 ? O3' FAD 601 A 1 HETATM 46 C C4' FAD . . . H 2 -13.343 -61.954 -42.114 1 51.7 ? C4' FAD 601 A 1 HETATM 47 O O4' FAD . . . H 2 -14.228 -61.225 -41.256 1 59.89 ? O4' FAD 601 A 1 HETATM 48 C C5' FAD . . . H 2 -11.99 -61.259 -42.233 1 51.06 ? C5' FAD 601 A 1 HETATM 49 O O5' FAD . . . H 2 -11.483 -60.824 -40.971 1 45.1 ? O5' FAD 601 A 1 HETATM 50 P P FAD . . . H 2 -10.45 -59.589 -40.94 1 47.36 ? P FAD 601 A 1 HETATM 51 O O1P FAD . . . H 2 -9.944 -59.359 -39.536 1 56.71 ? O1P FAD 601 A 1 HETATM 52 O O2P FAD . . . H 2 -9.289 -59.859 -41.866 1 36.04 ? O2P FAD 601 A 1 HETATM 53 O O3P FAD . . . H 2 -11.247 -58.287 -41.441 1 60.3 ? O3P FAD 601 A 1 HETATM 54 H H51A FAD . . . H 2 -13.761 -55.446 -39.999 1 64.45 ? H51A FAD 601 A 1 HETATM 55 H H52A FAD . . . H 2 -12.35 -54.763 -40.817 1 64.45 ? H52A FAD 601 A 1 HETATM 56 H H4B FAD . . . H 2 -12.404 -54.951 -37.799 1 52.15 ? H4B FAD 601 A 1 HETATM 57 H H3B FAD . . . H 2 -13.998 -53.125 -39.545 1 56.14 ? H3B FAD 601 A 1 HETATM 58 H HO3A FAD . . . H 2 -14.096 -53.878 -36.762 1 79.7 ? HO3A FAD 601 A 1 HETATM 59 H H2B FAD . . . H 2 -13.072 -51.212 -38.822 1 57.36 ? H2B FAD 601 A 1 HETATM 60 H HO2A FAD . . . H 2 -14.077 -51.464 -36.719 1 74.59 ? HO2A FAD 601 A 1 HETATM 61 H H1B FAD . . . H 2 -10.89 -52.376 -37.254 1 65.91 ? H1B FAD 601 A 1 HETATM 62 H H8A FAD . . . H 2 -11.291 -51.934 -41.047 1 62.13 ? H8A FAD 601 A 1 HETATM 63 H H61A FAD . . . H 2 -8.433 -47.93 -41.588 1 77.14 ? H61A FAD 601 A 1 HETATM 64 H H62A FAD . . . H 2 -7.563 -46.871 -40.5 1 77.14 ? H62A FAD 601 A 1 HETATM 65 H H2A FAD . . . H 2 -8.37 -48.522 -36.27 1 52.19 ? H2A FAD 601 A 1 HETATM 66 H HN3 FAD . . . H 2 -17.508 -68.438 -44.65 1 61.09 ? HN3 FAD 601 A 1 HETATM 67 H H6 FAD . . . H 2 -21.865 -63.201 -45.912 1 65.85 ? H6 FAD 601 A 1 HETATM 68 H HM71 FAD . . . H 2 -22.9 -61.184 -46.804 1 49.15 ? HM71 FAD 601 A 1 HETATM 69 H HM72 FAD . . . H 2 -22.085 -59.659 -46.772 1 49.15 ? HM72 FAD 601 A 1 HETATM 70 H HM73 FAD . . . H 2 -22.779 -60.299 -45.323 1 49.15 ? HM73 FAD 601 A 1 HETATM 71 H HM81 FAD . . . H 2 -20.677 -58.575 -45.578 1 68.66 ? HM81 FAD 601 A 1 HETATM 72 H HM82 FAD . . . H 2 -19.549 -58.69 -46.884 1 68.66 ? HM82 FAD 601 A 1 HETATM 73 H HM83 FAD . . . H 2 -18.978 -58.556 -45.257 1 68.66 ? HM83 FAD 601 A 1 HETATM 74 H H9 FAD . . . H 2 -17.641 -60.515 -45.356 1 70.8 ? H9 FAD 601 A 1 HETATM 75 H "H1'1" FAD . . . H 2 -15.231 -63.049 -45.517 1 54.92 ? "H1'1" FAD 601 A 1 HETATM 76 H "H1'2" FAD . . . H 2 -16.023 -61.505 -45.247 1 54.92 ? "H1'2" FAD 601 A 1 HETATM 77 H H2' FAD . . . H 2 -15.491 -63.51 -43.018 1 50.68 ? H2' FAD 601 A 1 HETATM 78 H HO2' FAD . . . H 2 -17.065 -61.805 -42.616 1 48.42 ? HO2' FAD 601 A 1 HETATM 79 H H3' FAD . . . H 2 -13.9 -61.098 -43.99 1 45.24 ? H3' FAD 601 A 1 HETATM 80 H H4' FAD . . . H 2 -13.183 -62.963 -41.707 1 62.04 ? H4' FAD 601 A 1 HETATM 81 H HO4' FAD . . . H 2 -13.839 -61.156 -40.374 1 71.87 ? HO4' FAD 601 A 1 HETATM 82 H "H5'1" FAD . . . H 2 -12.089 -60.396 -42.895 1 61.27 ? "H5'1" FAD 601 A 1 HETATM 83 H "H5'2" FAD . . . H 2 -11.274 -61.945 -42.689 1 61.27 ? "H5'2" FAD 601 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 73 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 83 #