data_5X1Y # _model_server_result.job_id mVV-pKFA7e7Xcr2xlKzgUg _model_server_result.datetime_utc '2025-02-05 10:49:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x1y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":601}' # _entry.id 5X1Y # _exptl.entry_id 5X1Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.62 _cell.angle_gamma 90 _cell.entry_id 5X1Y _cell.length_a 236.38 _cell.length_b 150.27 _cell.length_c 122.78 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X1Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G,I 1 1 B,E,H,K 2 1 D,F,J,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 122 B CYS 122 1_555 A SG CYS 127 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 B SG CYS 122 A CYS 122 1_555 B SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 C SG CYS 122 C CYS 122 1_555 C SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 D SG CYS 122 D CYS 122 1_555 D SG CYS 127 D CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf5 E SG CYS 122 E CYS 122 1_555 E SG CYS 127 E CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 F SG CYS 122 F CYS 122 1_555 F SG CYS 127 F CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 5X1Y _atom_sites.fract_transf_matrix[1][1] 0.00423 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000194 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008153 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 FAD B 1 601 2 FAD FAD . H 2 FAD A 1 601 1 FAD FAD . I 2 FAD C 1 601 4 FAD FAD . J 2 FAD D 1 601 3 FAD FAD . K 2 FAD E 1 601 5 FAD FAD . L 2 FAD F 1 601 6 FAD FAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . I 2 -69.387 -56.185 0.489 1 48.49 ? PA FAD 601 C 1 HETATM 2 O O1A FAD . . . I 2 -68.044 -56.198 1.181 1 51.57 ? O1A FAD 601 C 1 HETATM 3 O O2A FAD . . . I 2 -69.511 -57.303 -0.522 1 47.87 ? O2A FAD 601 C 1 HETATM 4 O O5B FAD . . . I 2 -70.539 -56.367 1.591 1 33.87 ? O5B FAD 601 C 1 HETATM 5 C C5B FAD . . . I 2 -71.875 -56.615 1.173 1 38.6 ? C5B FAD 601 C 1 HETATM 6 C C4B FAD . . . I 2 -72.709 -57.031 2.377 1 38.25 ? C4B FAD 601 C 1 HETATM 7 O O4B FAD . . . I 2 -74.037 -56.529 2.219 1 36.39 ? O4B FAD 601 C 1 HETATM 8 C C3B FAD . . . I 2 -72.815 -58.542 2.545 1 38.44 ? C3B FAD 601 C 1 HETATM 9 O O3B FAD . . . I 2 -72.49 -58.916 3.884 1 48.57 ? O3B FAD 601 C 1 HETATM 10 C C2B FAD . . . I 2 -74.263 -58.867 2.263 1 46.51 ? C2B FAD 601 C 1 HETATM 11 O O2B FAD . . . I 2 -74.737 -59.915 3.111 1 54.02 ? O2B FAD 601 C 1 HETATM 12 C C1B FAD . . . I 2 -74.976 -57.552 2.549 1 43.26 ? C1B FAD 601 C 1 HETATM 13 N N9A FAD . . . I 2 -76.235 -57.41 1.778 1 40.01 ? N9A FAD 601 C 1 HETATM 14 C C8A FAD . . . I 2 -76.387 -57.606 0.457 1 43.01 ? C8A FAD 601 C 1 HETATM 15 N N7A FAD . . . I 2 -77.677 -57.383 0.093 1 54.89 ? N7A FAD 601 C 1 HETATM 16 C C5A FAD . . . I 2 -78.366 -57.034 1.193 1 53.96 ? C5A FAD 601 C 1 HETATM 17 C C6A FAD . . . I 2 -79.766 -56.666 1.508 1 67.63 ? C6A FAD 601 C 1 HETATM 18 N N6A FAD . . . I 2 -80.712 -56.626 0.539 1 73.37 ? N6A FAD 601 C 1 HETATM 19 N N1A FAD . . . I 2 -80.066 -56.374 2.793 1 58.36 ? N1A FAD 601 C 1 HETATM 20 C C2A FAD . . . I 2 -79.137 -56.41 3.765 1 46.01 ? C2A FAD 601 C 1 HETATM 21 N N3A FAD . . . I 2 -77.852 -56.736 3.539 1 45.15 ? N3A FAD 601 C 1 HETATM 22 C C4A FAD . . . I 2 -77.409 -57.052 2.301 1 43.05 ? C4A FAD 601 C 1 HETATM 23 N N1 FAD . . . I 2 -60.937 -56.208 -3.693 1 45.5 ? N1 FAD 601 C 1 HETATM 24 C C2 FAD . . . I 2 -59.704 -55.657 -3.546 1 45.63 ? C2 FAD 601 C 1 HETATM 25 O O2 FAD . . . I 2 -59.619 -54.432 -3.313 1 51.79 ? O2 FAD 601 C 1 HETATM 26 N N3 FAD . . . I 2 -58.566 -56.367 -3.642 1 51.1 ? N3 FAD 601 C 1 HETATM 27 C C4 FAD . . . I 2 -58.571 -57.682 -3.891 1 47.56 ? C4 FAD 601 C 1 HETATM 28 O O4 FAD . . . I 2 -57.504 -58.335 -3.982 1 35.87 ? O4 FAD 601 C 1 HETATM 29 C C4X FAD . . . I 2 -59.882 -58.351 -4.06 1 50.36 ? C4X FAD 601 C 1 HETATM 30 N N5 FAD . . . I 2 -59.956 -59.665 -4.311 1 52.23 ? N5 FAD 601 C 1 HETATM 31 C C5X FAD . . . I 2 -61.155 -60.261 -4.466 1 43.79 ? C5X FAD 601 C 1 HETATM 32 C C6 FAD . . . I 2 -61.162 -61.623 -4.724 1 48.06 ? C6 FAD 601 C 1 HETATM 33 C C7 FAD . . . I 2 -62.359 -62.298 -4.894 1 45.7 ? C7 FAD 601 C 1 HETATM 34 C C7M FAD . . . I 2 -62.338 -63.776 -5.173 1 48.26 ? C7M FAD 601 C 1 HETATM 35 C C8 FAD . . . I 2 -63.64 -61.553 -4.797 1 44.87 ? C8 FAD 601 C 1 HETATM 36 C C8M FAD . . . I 2 -64.962 -62.25 -4.971 1 57.52 ? C8M FAD 601 C 1 HETATM 37 C C9 FAD . . . I 2 -63.638 -60.188 -4.538 1 42.92 ? C9 FAD 601 C 1 HETATM 38 C C9A FAD . . . I 2 -62.438 -59.496 -4.366 1 41.52 ? C9A FAD 601 C 1 HETATM 39 N N10 FAD . . . I 2 -62.383 -58.1 -4.094 1 44.76 ? N10 FAD 601 C 1 HETATM 40 C C10 FAD . . . I 2 -61.103 -57.523 -3.946 1 47.24 ? C10 FAD 601 C 1 HETATM 41 C C1' FAD . . . I 2 -63.557 -57.211 -3.989 1 43.92 ? C1' FAD 601 C 1 HETATM 42 C C2' FAD . . . I 2 -63.825 -56.732 -2.568 1 45.88 ? C2' FAD 601 C 1 HETATM 43 O O2' FAD . . . I 2 -64.212 -57.836 -1.741 1 52.04 ? O2' FAD 601 C 1 HETATM 44 C C3' FAD . . . I 2 -64.952 -55.708 -2.593 1 45.06 ? C3' FAD 601 C 1 HETATM 45 O O3' FAD . . . I 2 -64.573 -54.622 -3.447 1 36.83 ? O3' FAD 601 C 1 HETATM 46 C C4' FAD . . . I 2 -65.295 -55.18 -1.201 1 58.31 ? C4' FAD 601 C 1 HETATM 47 O O4' FAD . . . I 2 -65.523 -56.271 -0.297 1 53.43 ? O4' FAD 601 C 1 HETATM 48 C C5' FAD . . . I 2 -66.526 -54.275 -1.291 1 51.58 ? C5' FAD 601 C 1 HETATM 49 O O5' FAD . . . I 2 -67.076 -53.981 -0.007 1 42.08 ? O5' FAD 601 C 1 HETATM 50 P P FAD . . . I 2 -68.623 -53.539 0.114 1 46.54 ? P FAD 601 C 1 HETATM 51 O O1P FAD . . . I 2 -68.937 -53.095 1.525 1 56.45 ? O1P FAD 601 C 1 HETATM 52 O O2P FAD . . . I 2 -68.914 -52.431 -0.865 1 50.39 ? O2P FAD 601 C 1 HETATM 53 O O3P FAD . . . I 2 -69.564 -54.782 -0.271 1 42.65 ? O3P FAD 601 C 1 HETATM 54 H H51A FAD . . . I 2 -71.887 -57.408 0.423 1 46.33 ? H51A FAD 601 C 1 HETATM 55 H H52A FAD . . . I 2 -72.297 -55.713 0.725 1 46.33 ? H52A FAD 601 C 1 HETATM 56 H H4B FAD . . . I 2 -72.255 -56.606 3.284 1 45.9 ? H4B FAD 601 C 1 HETATM 57 H H3B FAD . . . I 2 -72.165 -59.05 1.819 1 46.13 ? H3B FAD 601 C 1 HETATM 58 H HO3A FAD . . . I 2 -72.611 -59.869 3.992 1 58.28 ? HO3A FAD 601 C 1 HETATM 59 H H2B FAD . . . I 2 -74.384 -59.132 1.203 1 55.81 ? H2B FAD 601 C 1 HETATM 60 H HO2A FAD . . . I 2 -74.266 -60.734 2.905 1 64.82 ? HO2A FAD 601 C 1 HETATM 61 H H1B FAD . . . I 2 -75.201 -57.509 3.624 1 51.91 ? H1B FAD 601 C 1 HETATM 62 H H8A FAD . . . I 2 -75.596 -57.902 -0.22 1 51.61 ? H8A FAD 601 C 1 HETATM 63 H H61A FAD . . . I 2 -81.662 -56.373 0.77 1 88.04 ? H61A FAD 601 C 1 HETATM 64 H H62A FAD . . . I 2 -80.467 -56.849 -0.415 1 88.04 ? H62A FAD 601 C 1 HETATM 65 H H2A FAD . . . I 2 -79.438 -56.164 4.776 1 55.21 ? H2A FAD 601 C 1 HETATM 66 H HN3 FAD . . . I 2 -57.655 -55.881 -3.519 1 61.32 ? HN3 FAD 601 C 1 HETATM 67 H H6 FAD . . . I 2 -60.225 -62.163 -4.793 1 57.68 ? H6 FAD 601 C 1 HETATM 68 H HM71 FAD . . . I 2 -63.181 -64.037 -5.759 1 57.92 ? HM71 FAD 601 C 1 HETATM 69 H HM72 FAD . . . I 2 -61.452 -64.023 -5.698 1 57.92 ? HM72 FAD 601 C 1 HETATM 70 H HM73 FAD . . . I 2 -62.366 -64.308 -4.258 1 57.92 ? HM73 FAD 601 C 1 HETATM 71 H HM81 FAD . . . I 2 -64.874 -63.256 -4.652 1 69.02 ? HM81 FAD 601 C 1 HETATM 72 H HM82 FAD . . . I 2 -65.699 -61.759 -4.392 1 69.02 ? HM82 FAD 601 C 1 HETATM 73 H HM83 FAD . . . I 2 -65.241 -62.227 -5.992 1 69.02 ? HM83 FAD 601 C 1 HETATM 74 H H9 FAD . . . I 2 -64.578 -59.655 -4.471 1 51.5 ? H9 FAD 601 C 1 HETATM 75 H "H1'1" FAD . . . I 2 -63.404 -56.343 -4.633 1 52.7 ? "H1'1" FAD 601 C 1 HETATM 76 H "H1'2" FAD . . . I 2 -64.438 -57.741 -4.357 1 52.7 ? "H1'2" FAD 601 C 1 HETATM 77 H H2' FAD . . . I 2 -62.917 -56.258 -2.17 1 55.06 ? H2' FAD 601 C 1 HETATM 78 H HO2' FAD . . . I 2 -63.5 -58.49 -1.723 1 62.44 ? HO2' FAD 601 C 1 HETATM 79 H H3' FAD . . . I 2 -65.847 -56.196 -3.004 1 54.08 ? H3' FAD 601 C 1 HETATM 80 H H4' FAD . . . I 2 -64.449 -54.577 -0.842 1 69.98 ? H4' FAD 601 C 1 HETATM 81 H HO4' FAD . . . I 2 -65.718 -55.924 0.584 1 64.11 ? HO4' FAD 601 C 1 HETATM 82 H "H5'1" FAD . . . I 2 -67.286 -54.763 -1.905 1 61.89 ? "H5'1" FAD 601 C 1 HETATM 83 H "H5'2" FAD . . . I 2 -66.25 -53.342 -1.786 1 61.89 ? "H5'2" FAD 601 C 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 48 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 83 #