data_5X1Y # _model_server_result.job_id yJSMoeERmk2MEXmcLnTx8g _model_server_result.datetime_utc '2025-02-05 10:47:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x1y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":601}' # _entry.id 5X1Y # _exptl.entry_id 5X1Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.62 _cell.angle_gamma 90 _cell.entry_id 5X1Y _cell.length_a 236.38 _cell.length_b 150.27 _cell.length_c 122.78 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X1Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G,I 1 1 B,E,H,K 2 1 D,F,J,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 122 B CYS 122 1_555 A SG CYS 127 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 B SG CYS 122 A CYS 122 1_555 B SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 C SG CYS 122 C CYS 122 1_555 C SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 D SG CYS 122 D CYS 122 1_555 D SG CYS 127 D CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf5 E SG CYS 122 E CYS 122 1_555 E SG CYS 127 E CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 F SG CYS 122 F CYS 122 1_555 F SG CYS 127 F CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 5X1Y _atom_sites.fract_transf_matrix[1][1] 0.00423 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000194 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008153 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 FAD B 1 601 2 FAD FAD . H 2 FAD A 1 601 1 FAD FAD . I 2 FAD C 1 601 4 FAD FAD . J 2 FAD D 1 601 3 FAD FAD . K 2 FAD E 1 601 5 FAD FAD . L 2 FAD F 1 601 6 FAD FAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . J 2 -74.255 -61.784 33.585 1 40.27 ? PA FAD 601 D 1 HETATM 2 O O1A FAD . . . J 2 -73.37 -62.782 32.883 1 42.25 ? O1A FAD 601 D 1 HETATM 3 O O2A FAD . . . J 2 -73.477 -61.059 34.655 1 46.38 ? O2A FAD 601 D 1 HETATM 4 O O5B FAD . . . J 2 -74.793 -60.704 32.511 1 36.25 ? O5B FAD 601 D 1 HETATM 5 C C5B FAD . . . J 2 -75.584 -59.578 32.904 1 40.8 ? C5B FAD 601 D 1 HETATM 6 C C4B FAD . . . J 2 -75.793 -58.643 31.712 1 43.42 ? C4B FAD 601 D 1 HETATM 7 O O4B FAD . . . J 2 -77.023 -57.915 31.823 1 50.77 ? O4B FAD 601 D 1 HETATM 8 C C3B FAD . . . J 2 -74.698 -57.594 31.575 1 28.96 ? C3B FAD 601 D 1 HETATM 9 O O3B FAD . . . J 2 -74.023 -57.752 30.327 1 37.49 ? O3B FAD 601 D 1 HETATM 10 C C2B FAD . . . J 2 -75.409 -56.26 31.62 1 31.89 ? C2B FAD 601 D 1 HETATM 11 O O2B FAD . . . J 2 -74.886 -55.351 30.656 1 50.14 ? O2B FAD 601 D 1 HETATM 12 C C1B FAD . . . J 2 -76.843 -56.601 31.291 1 42.87 ? C1B FAD 601 D 1 HETATM 13 N N9A FAD . . . J 2 -77.78 -55.632 31.9 1 44.08 ? N9A FAD 601 D 1 HETATM 14 C C8A FAD . . . J 2 -77.941 -55.44 33.219 1 54.67 ? C8A FAD 601 D 1 HETATM 15 N N7A FAD . . . J 2 -78.885 -54.493 33.453 1 58.08 ? N7A FAD 601 D 1 HETATM 16 C C5A FAD . . . J 2 -79.337 -54.067 32.264 1 48.84 ? C5A FAD 601 D 1 HETATM 17 C C6A FAD . . . J 2 -80.333 -53.079 31.806 1 53.63 ? C6A FAD 601 D 1 HETATM 18 N N6A FAD . . . J 2 -81.038 -52.349 32.703 1 60.95 ? N6A FAD 601 D 1 HETATM 19 N N1A FAD . . . J 2 -80.504 -52.937 30.475 1 51.84 ? N1A FAD 601 D 1 HETATM 20 C C2A FAD . . . J 2 -79.801 -53.664 29.583 1 46.14 ? C2A FAD 601 D 1 HETATM 21 N N3A FAD . . . J 2 -78.881 -54.577 29.938 1 38.04 ? N3A FAD 601 D 1 HETATM 22 C C4A FAD . . . J 2 -78.607 -54.821 31.24 1 42.57 ? C4A FAD 601 D 1 HETATM 23 N N1 FAD . . . J 2 -69.448 -68.949 37.81 1 48.3 ? N1 FAD 601 D 1 HETATM 24 C C2 FAD . . . J 2 -68.94 -70.196 37.64 1 48.44 ? C2 FAD 601 D 1 HETATM 25 O O2 FAD . . . J 2 -69.706 -71.117 37.291 1 65.31 ? O2 FAD 601 D 1 HETATM 26 N N3 FAD . . . J 2 -67.646 -70.494 37.83 1 53.07 ? N3 FAD 601 D 1 HETATM 27 C C4 FAD . . . J 2 -66.763 -69.563 38.207 1 54.76 ? C4 FAD 601 D 1 HETATM 28 O O4 FAD . . . J 2 -65.554 -69.832 38.391 1 61.27 ? O4 FAD 601 D 1 HETATM 29 C C4X FAD . . . J 2 -67.242 -68.182 38.41 1 39.76 ? C4X FAD 601 D 1 HETATM 30 N N5 FAD . . . J 2 -66.392 -67.218 38.785 1 43.3 ? N5 FAD 601 D 1 HETATM 31 C C5X FAD . . . J 2 -66.837 -65.964 38.97 1 42.21 ? C5X FAD 601 D 1 HETATM 32 C C6 FAD . . . J 2 -65.915 -65.005 39.357 1 38.65 ? C6 FAD 601 D 1 HETATM 33 C C7 FAD . . . J 2 -66.315 -63.697 39.56 1 40.98 ? C7 FAD 601 D 1 HETATM 34 C C7M FAD . . . J 2 -65.301 -62.673 39.986 1 47.63 ? C7M FAD 601 D 1 HETATM 35 C C8 FAD . . . J 2 -67.739 -63.327 39.359 1 58.17 ? C8 FAD 601 D 1 HETATM 36 C C8M FAD . . . J 2 -68.21 -61.915 39.574 1 69.71 ? C8M FAD 601 D 1 HETATM 37 C C9 FAD . . . J 2 -68.667 -64.286 38.973 1 57.22 ? C9 FAD 601 D 1 HETATM 38 C C9A FAD . . . J 2 -68.274 -65.605 38.767 1 43.6 ? C9A FAD 601 D 1 HETATM 39 N N10 FAD . . . J 2 -69.194 -66.607 38.36 1 47.22 ? N10 FAD 601 D 1 HETATM 40 C C10 FAD . . . J 2 -68.677 -67.91 38.188 1 42.8 ? C10 FAD 601 D 1 HETATM 41 C C1' FAD . . . J 2 -70.639 -66.364 38.148 1 50.45 ? C1' FAD 601 D 1 HETATM 42 C C2' FAD . . . J 2 -70.997 -65.979 36.715 1 40.83 ? C2' FAD 601 D 1 HETATM 43 O O2' FAD . . . J 2 -70.198 -64.874 36.286 1 41.31 ? O2' FAD 601 D 1 HETATM 44 C C3' FAD . . . J 2 -72.47 -65.601 36.655 1 49.05 ? C3' FAD 601 D 1 HETATM 45 O O3' FAD . . . J 2 -73.201 -66.482 37.517 1 56.31 ? O3' FAD 601 D 1 HETATM 46 C C4' FAD . . . J 2 -73.048 -65.678 35.243 1 60.28 ? C4' FAD 601 D 1 HETATM 47 O O4' FAD . . . J 2 -72.406 -64.749 34.364 1 50.35 ? O4' FAD 601 D 1 HETATM 48 C C5' FAD . . . J 2 -74.541 -65.375 35.264 1 54.34 ? C5' FAD 601 D 1 HETATM 49 O O5' FAD . . . J 2 -74.992 -65.103 33.943 1 33.5 ? O5' FAD 601 D 1 HETATM 50 P P FAD . . . J 2 -76.08 -63.945 33.738 1 49.65 ? P FAD 601 D 1 HETATM 51 O O1P FAD . . . J 2 -76.425 -63.834 32.269 1 49.4 ? O1P FAD 601 D 1 HETATM 52 O O2P FAD . . . J 2 -77.302 -64.281 34.558 1 48.77 ? O2P FAD 601 D 1 HETATM 53 O O3P FAD . . . J 2 -75.48 -62.556 34.293 1 53.61 ? O3P FAD 601 D 1 HETATM 54 H H51A FAD . . . J 2 -76.552 -59.921 33.277 1 48.96 ? H51A FAD 601 D 1 HETATM 55 H H52A FAD . . . J 2 -75.081 -59.04 33.711 1 48.96 ? H52A FAD 601 D 1 HETATM 56 H H4B FAD . . . J 2 -75.807 -59.25 30.796 1 52.11 ? H4B FAD 601 D 1 HETATM 57 H H3B FAD . . . J 2 -73.996 -57.672 32.417 1 34.75 ? H3B FAD 601 D 1 HETATM 58 H HO3A FAD . . . J 2 -73.358 -57.057 30.23 1 44.99 ? HO3A FAD 601 D 1 HETATM 59 H H2B FAD . . . J 2 -75.349 -55.839 32.634 1 38.27 ? H2B FAD 601 D 1 HETATM 60 H HO2A FAD . . . J 2 -73.969 -55.14 30.876 1 60.16 ? HO2A FAD 601 D 1 HETATM 61 H H1B FAD . . . J 2 -76.967 -56.614 30.199 1 51.44 ? H1B FAD 601 D 1 HETATM 62 H H8A FAD . . . J 2 -77.397 -55.972 33.99 1 65.61 ? H8A FAD 601 D 1 HETATM 63 H H61A FAD . . . J 2 -81.717 -51.674 32.382 1 73.13 ? H61A FAD 601 D 1 HETATM 64 H H62A FAD . . . J 2 -80.884 -52.479 33.693 1 73.13 ? H62A FAD 601 D 1 HETATM 65 H H2A FAD . . . J 2 -79.986 -53.503 28.528 1 55.36 ? H2A FAD 601 D 1 HETATM 66 H HN3 FAD . . . J 2 -67.323 -71.472 37.684 1 63.69 ? HN3 FAD 601 D 1 HETATM 67 H H6 FAD . . . J 2 -64.878 -65.281 39.502 1 46.38 ? H6 FAD 601 D 1 HETATM 68 H HM71 FAD . . . J 2 -64.544 -63.142 40.559 1 57.15 ? HM71 FAD 601 D 1 HETATM 69 H HM72 FAD . . . J 2 -65.776 -61.928 40.571 1 57.15 ? HM72 FAD 601 D 1 HETATM 70 H HM73 FAD . . . J 2 -64.87 -62.226 39.129 1 57.15 ? HM73 FAD 601 D 1 HETATM 71 H HM81 FAD . . . J 2 -69.028 -61.714 38.931 1 83.65 ? HM81 FAD 601 D 1 HETATM 72 H HM82 FAD . . . J 2 -67.42 -61.243 39.362 1 83.65 ? HM82 FAD 601 D 1 HETATM 73 H HM83 FAD . . . J 2 -68.515 -61.794 40.581 1 83.65 ? HM83 FAD 601 D 1 HETATM 74 H H9 FAD . . . J 2 -69.703 -64.005 38.83 1 68.66 ? H9 FAD 601 D 1 HETATM 75 H "H1'1" FAD . . . J 2 -70.965 -65.567 38.82 1 60.53 ? "H1'1" FAD 601 D 1 HETATM 76 H "H1'2" FAD . . . J 2 -71.192 -67.265 38.42 1 60.53 ? "H1'2" FAD 601 D 1 HETATM 77 H H2' FAD . . . J 2 -70.825 -66.845 36.061 1 48.99 ? H2' FAD 601 D 1 HETATM 78 H HO2' FAD . . . J 2 -70.43 -64.642 35.377 1 49.58 ? HO2' FAD 601 D 1 HETATM 79 H H3' FAD . . . J 2 -72.576 -64.568 37.014 1 58.85 ? H3' FAD 601 D 1 HETATM 80 H H4' FAD . . . J 2 -72.907 -66.7 34.865 1 72.33 ? H4' FAD 601 D 1 HETATM 81 H HO4' FAD . . . J 2 -72.773 -64.84 33.474 1 60.42 ? HO4' FAD 601 D 1 HETATM 82 H "H5'1" FAD . . . J 2 -74.734 -64.512 35.905 1 65.21 ? "H5'1" FAD 601 D 1 HETATM 83 H "H5'2" FAD . . . J 2 -75.085 -66.23 35.672 1 65.21 ? "H5'2" FAD 601 D 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 83 #