data_5X1Y # _model_server_result.job_id acJhfYf2qWZLKcze5pHEwA _model_server_result.datetime_utc '2025-02-05 10:51:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x1y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":601}' # _entry.id 5X1Y # _exptl.entry_id 5X1Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.62 _cell.angle_gamma 90 _cell.entry_id 5X1Y _cell.length_a 236.38 _cell.length_b 150.27 _cell.length_c 122.78 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X1Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G,I 1 1 B,E,H,K 2 1 D,F,J,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 122 B CYS 122 1_555 A SG CYS 127 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 B SG CYS 122 A CYS 122 1_555 B SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 C SG CYS 122 C CYS 122 1_555 C SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 D SG CYS 122 D CYS 122 1_555 D SG CYS 127 D CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf5 E SG CYS 122 E CYS 122 1_555 E SG CYS 127 E CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 F SG CYS 122 F CYS 122 1_555 F SG CYS 127 F CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 5X1Y _atom_sites.fract_transf_matrix[1][1] 0.00423 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000194 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008153 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 FAD B 1 601 2 FAD FAD . H 2 FAD A 1 601 1 FAD FAD . I 2 FAD C 1 601 4 FAD FAD . J 2 FAD D 1 601 3 FAD FAD . K 2 FAD E 1 601 5 FAD FAD . L 2 FAD F 1 601 6 FAD FAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . L 2 -44.675 -107.57 39.434 1 54.14 ? PA FAD 601 F 1 HETATM 2 O O1A FAD . . . L 2 -45.008 -106.368 40.287 1 42.55 ? O1A FAD 601 F 1 HETATM 3 O O2A FAD . . . L 2 -43.67 -107.227 38.36 1 47.56 ? O2A FAD 601 F 1 HETATM 4 O O5B FAD . . . L 2 -44.027 -108.715 40.347 1 48.39 ? O5B FAD 601 F 1 HETATM 5 C C5B FAD . . . L 2 -42.713 -109.143 40.018 1 51.88 ? C5B FAD 601 F 1 HETATM 6 C C4B FAD . . . L 2 -42.129 -109.912 41.192 1 48.13 ? C4B FAD 601 F 1 HETATM 7 O O4B FAD . . . L 2 -42.084 -111.306 40.888 1 46.06 ? O4B FAD 601 F 1 HETATM 8 C C3B FAD . . . L 2 -40.706 -109.492 41.528 1 51.4 ? C3B FAD 601 F 1 HETATM 9 O O3B FAD . . . L 2 -40.633 -109.122 42.904 1 65.14 ? O3B FAD 601 F 1 HETATM 10 C C2B FAD . . . L 2 -39.86 -110.712 41.261 1 42.83 ? C2B FAD 601 F 1 HETATM 11 O O2B FAD . . . L 2 -38.8 -110.833 42.212 1 59.28 ? O2B FAD 601 F 1 HETATM 12 C C1B FAD . . . L 2 -40.857 -111.846 41.384 1 53.74 ? C1B FAD 601 F 1 HETATM 13 N N9A FAD . . . L 2 -40.407 -113.033 40.617 1 60.18 ? N9A FAD 601 F 1 HETATM 14 C C8A FAD . . . L 2 -40.277 -113.112 39.281 1 59.72 ? C8A FAD 601 F 1 HETATM 15 N N7A FAD . . . L 2 -39.844 -114.347 38.915 1 62.39 ? N7A FAD 601 F 1 HETATM 16 C C5A FAD . . . L 2 -39.695 -115.077 40.034 1 60.29 ? C5A FAD 601 F 1 HETATM 17 C C6A FAD . . . L 2 -39.273 -116.455 40.359 1 66.69 ? C6A FAD 601 F 1 HETATM 18 N N6A FAD . . . L 2 -38.912 -117.317 39.379 1 66.32 ? N6A FAD 601 F 1 HETATM 19 N N1A FAD . . . L 2 -39.26 -116.817 41.661 1 65.42 ? N1A FAD 601 F 1 HETATM 20 C C2A FAD . . . L 2 -39.616 -115.968 42.645 1 55.47 ? C2A FAD 601 F 1 HETATM 21 N N3A FAD . . . L 2 -40.009 -114.704 42.413 1 45.47 ? N3A FAD 601 F 1 HETATM 22 C C4A FAD . . . L 2 -40.069 -114.208 41.155 1 55.85 ? C4A FAD 601 F 1 HETATM 23 N N1 FAD . . . L 2 -48.962 -99.507 35.772 1 52.47 ? N1 FAD 601 F 1 HETATM 24 C C2 FAD . . . L 2 -50.011 -98.658 35.949 1 51.58 ? C2 FAD 601 F 1 HETATM 25 O O2 FAD . . . L 2 -51.149 -99.139 36.149 1 48.11 ? O2 FAD 601 F 1 HETATM 26 N N3 FAD . . . L 2 -49.879 -97.319 35.919 1 53.21 ? N3 FAD 601 F 1 HETATM 27 C C4 FAD . . . L 2 -48.693 -96.734 35.709 1 54.7 ? C4 FAD 601 F 1 HETATM 28 O O4 FAD . . . L 2 -48.587 -95.486 35.682 1 51.16 ? O4 FAD 601 F 1 HETATM 29 C C4X FAD . . . L 2 -47.504 -97.599 35.51 1 53.35 ? C4X FAD 601 F 1 HETATM 30 N N5 FAD . . . L 2 -46.283 -97.079 35.296 1 68.62 ? N5 FAD 601 F 1 HETATM 31 C C5X FAD . . . L 2 -45.209 -97.882 35.114 1 60.03 ? C5X FAD 601 F 1 HETATM 32 C C6 FAD . . . L 2 -43.968 -97.295 34.896 1 56.23 ? C6 FAD 601 F 1 HETATM 33 C C7 FAD . . . L 2 -42.837 -98.079 34.703 1 52.97 ? C7 FAD 601 F 1 HETATM 34 C C7M FAD . . . L 2 -41.502 -97.421 34.469 1 61.92 ? C7M FAD 601 F 1 HETATM 35 C C8 FAD . . . L 2 -42.957 -99.559 34.735 1 58.45 ? C8 FAD 601 F 1 HETATM 36 C C8M FAD . . . L 2 -41.761 -100.451 34.533 1 71.47 ? C8M FAD 601 F 1 HETATM 37 C C9 FAD . . . L 2 -44.191 -100.15 34.952 1 51.02 ? C9 FAD 601 F 1 HETATM 38 C C9A FAD . . . L 2 -45.332 -99.372 35.144 1 50.66 ? C9A FAD 601 F 1 HETATM 39 N N10 FAD . . . L 2 -46.613 -99.942 35.379 1 56.53 ? N10 FAD 601 F 1 HETATM 40 C C10 FAD . . . L 2 -47.704 -99.062 35.554 1 51.76 ? C10 FAD 601 F 1 HETATM 41 C C1' FAD . . . L 2 -46.893 -101.388 35.398 1 57.99 ? C1' FAD 601 F 1 HETATM 42 C C2' FAD . . . L 2 -47.174 -101.951 36.784 1 47.11 ? C2' FAD 601 F 1 HETATM 43 O O2' FAD . . . L 2 -46.021 -101.761 37.605 1 47.67 ? O2' FAD 601 F 1 HETATM 44 C C3' FAD . . . L 2 -47.498 -103.439 36.686 1 41.64 ? C3' FAD 601 F 1 HETATM 45 O O3' FAD . . . L 2 -48.763 -103.636 36.041 1 53.58 ? O3' FAD 601 F 1 HETATM 46 C C4' FAD . . . L 2 -47.601 -104.103 38.051 1 45.79 ? C4' FAD 601 F 1 HETATM 47 O O4' FAD . . . L 2 -46.535 -103.679 38.906 1 47.75 ? O4' FAD 601 F 1 HETATM 48 C C5' FAD . . . L 2 -47.584 -105.621 37.891 1 44.39 ? C5' FAD 601 F 1 HETATM 49 O O5' FAD . . . L 2 -47.739 -106.263 39.156 1 51.51 ? O5' FAD 601 F 1 HETATM 50 P P FAD . . . L 2 -47.468 -107.843 39.294 1 40.35 ? P FAD 601 F 1 HETATM 51 O O1P FAD . . . L 2 -47.539 -108.257 40.745 1 51.27 ? O1P FAD 601 F 1 HETATM 52 O O2P FAD . . . L 2 -48.481 -108.605 38.477 1 41.39 ? O2P FAD 601 F 1 HETATM 53 O O3P FAD . . . L 2 -45.999 -108.155 38.727 1 65.9 ? O3P FAD 601 F 1 HETATM 54 H H51A FAD . . . L 2 -42.087 -108.278 39.793 1 62.26 ? H51A FAD 601 F 1 HETATM 55 H H52A FAD . . . L 2 -42.743 -109.784 39.134 1 62.26 ? H52A FAD 601 F 1 HETATM 56 H H4B FAD . . . L 2 -42.763 -109.743 42.073 1 57.75 ? H4B FAD 601 F 1 HETATM 57 H H3B FAD . . . L 2 -40.393 -108.665 40.876 1 61.68 ? H3B FAD 601 F 1 HETATM 58 H HO3A FAD . . . L 2 -39.72 -108.901 43.13 1 78.17 ? HO3A FAD 601 F 1 HETATM 59 H H2B FAD . . . L 2 -39.466 -110.674 40.235 1 51.4 ? H2B FAD 601 F 1 HETATM 60 H HO2A FAD . . . L 2 -38.184 -110.096 42.104 1 71.14 ? HO2A FAD 601 F 1 HETATM 61 H H1B FAD . . . L 2 -40.966 -112.106 42.446 1 64.49 ? H1B FAD 601 F 1 HETATM 62 H H8A FAD . . . L 2 -40.484 -112.302 38.592 1 71.67 ? H8A FAD 601 F 1 HETATM 63 H H61A FAD . . . L 2 -38.625 -118.257 39.613 1 79.59 ? H61A FAD 601 F 1 HETATM 64 H H62A FAD . . . L 2 -38.932 -117.02 38.413 1 79.59 ? H62A FAD 601 F 1 HETATM 65 H H2A FAD . . . L 2 -39.583 -116.32 43.668 1 66.56 ? H2A FAD 601 F 1 HETATM 66 H HN3 FAD . . . L 2 -50.72 -96.724 36.061 1 63.85 ? HN3 FAD 601 F 1 HETATM 67 H H6 FAD . . . L 2 -43.881 -96.216 34.877 1 67.48 ? H6 FAD 601 F 1 HETATM 68 H HM71 FAD . . . L 2 -41.647 -96.492 33.983 1 74.3 ? HM71 FAD 601 F 1 HETATM 69 H HM72 FAD . . . L 2 -41.02 -97.262 35.399 1 74.3 ? HM72 FAD 601 F 1 HETATM 70 H HM73 FAD . . . L 2 -40.901 -98.047 33.863 1 74.3 ? HM73 FAD 601 F 1 HETATM 71 H HM81 FAD . . . L 2 -41.897 -101.351 35.074 1 85.77 ? HM81 FAD 601 F 1 HETATM 72 H HM82 FAD . . . L 2 -41.655 -100.671 33.502 1 85.77 ? HM82 FAD 601 F 1 HETATM 73 H HM83 FAD . . . L 2 -40.891 -99.959 34.88 1 85.77 ? HM83 FAD 601 F 1 HETATM 74 H H9 FAD . . . L 2 -44.272 -101.23 34.967 1 61.22 ? H9 FAD 601 F 1 HETATM 75 H "H1'1" FAD . . . L 2 -46.04 -101.918 34.971 1 69.59 ? "H1'1" FAD 601 F 1 HETATM 76 H "H1'2" FAD . . . L 2 -47.754 -101.589 34.757 1 69.59 ? "H1'2" FAD 601 F 1 HETATM 77 H H2' FAD . . . L 2 -48.037 -101.424 37.216 1 56.54 ? H2' FAD 601 F 1 HETATM 78 H HO2' FAD . . . L 2 -45.269 -102.229 37.218 1 57.2 ? HO2' FAD 601 F 1 HETATM 79 H H3' FAD . . . L 2 -46.704 -103.936 36.111 1 49.96 ? H3' FAD 601 F 1 HETATM 80 H HO3' FAD . . . L 2 -48.744 -103.228 35.164 1 64.29 ? HO3' FAD 601 F 1 HETATM 81 H H4' FAD . . . L 2 -48.562 -103.816 38.5 1 54.95 ? H4' FAD 601 F 1 HETATM 82 H HO4' FAD . . . L 2 -46.638 -104.089 39.776 1 57.3 ? HO4' FAD 601 F 1 HETATM 83 H "H5'1" FAD . . . L 2 -46.64 -105.93 37.437 1 53.27 ? "H5'1" FAD 601 F 1 HETATM 84 H "H5'2" FAD . . . L 2 -48.394 -105.927 37.225 1 53.27 ? "H5'2" FAD 601 F 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 59 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 84 #