data_5X23 # _model_server_result.job_id Htj34vLDC0ay2tySyL8q1A _model_server_result.datetime_utc '2024-11-23 04:35:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x23 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 5X23 # _exptl.entry_id 5X23 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5X23 _cell.length_a 74.952 _cell.length_b 142.273 _cell.length_c 161.831 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X23 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 417 A CYS 435 1_555 B FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc2 B FE HEM . A HEM 501 1_555 H O HOH . A HOH 662 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 398 n n P O2 PO4 sing 399 n n P O3 PO4 sing 400 n n P O4 PO4 sing 401 n n # _atom_sites.entry_id 5X23 _atom_sites.fract_transf_matrix[1][1] 0.013342 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006179 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 500 HEM HEM . C 3 LSN A 1 502 501 LSN lsn . D 3 LSN A 1 503 502 LSN lsn . E 3 LSN A 1 504 504 LSN lsn . F 4 PO4 A 1 505 1 PO4 PO4 . G 5 K A 1 506 1 K K . H 6 HOH A 1 601 197 HOH HOH . H 6 HOH A 2 602 208 HOH HOH . H 6 HOH A 3 603 263 HOH HOH . H 6 HOH A 4 604 19 HOH HOH . H 6 HOH A 5 605 296 HOH HOH . H 6 HOH A 6 606 300 HOH HOH . H 6 HOH A 7 607 303 HOH HOH . H 6 HOH A 8 608 9 HOH HOH . H 6 HOH A 9 609 107 HOH HOH . H 6 HOH A 10 610 172 HOH HOH . H 6 HOH A 11 611 68 HOH HOH . H 6 HOH A 12 612 219 HOH HOH . H 6 HOH A 13 613 15 HOH HOH . H 6 HOH A 14 614 69 HOH HOH . H 6 HOH A 15 615 322 HOH HOH . H 6 HOH A 16 616 5 HOH HOH . H 6 HOH A 17 617 75 HOH HOH . H 6 HOH A 18 618 115 HOH HOH . H 6 HOH A 19 619 319 HOH HOH . H 6 HOH A 20 620 23 HOH HOH . H 6 HOH A 21 621 86 HOH HOH . H 6 HOH A 22 622 94 HOH HOH . H 6 HOH A 23 623 339 HOH HOH . H 6 HOH A 24 624 124 HOH HOH . H 6 HOH A 25 625 84 HOH HOH . H 6 HOH A 26 626 370 HOH HOH . H 6 HOH A 27 627 173 HOH HOH . H 6 HOH A 28 628 128 HOH HOH . H 6 HOH A 29 629 72 HOH HOH . H 6 HOH A 30 630 12 HOH HOH . H 6 HOH A 31 631 235 HOH HOH . H 6 HOH A 32 632 20 HOH HOH . H 6 HOH A 33 633 36 HOH HOH . H 6 HOH A 34 634 21 HOH HOH . H 6 HOH A 35 635 231 HOH HOH . H 6 HOH A 36 636 85 HOH HOH . H 6 HOH A 37 637 335 HOH HOH . H 6 HOH A 38 638 81 HOH HOH . H 6 HOH A 39 639 47 HOH HOH . H 6 HOH A 40 640 37 HOH HOH . H 6 HOH A 41 641 63 HOH HOH . H 6 HOH A 42 642 10 HOH HOH . H 6 HOH A 43 643 98 HOH HOH . H 6 HOH A 44 644 83 HOH HOH . H 6 HOH A 45 645 143 HOH HOH . H 6 HOH A 46 646 66 HOH HOH . H 6 HOH A 47 647 30 HOH HOH . H 6 HOH A 48 648 265 HOH HOH . H 6 HOH A 49 649 18 HOH HOH . H 6 HOH A 50 650 40 HOH HOH . H 6 HOH A 51 651 206 HOH HOH . H 6 HOH A 52 652 96 HOH HOH . H 6 HOH A 53 653 120 HOH HOH . H 6 HOH A 54 654 233 HOH HOH . H 6 HOH A 55 655 217 HOH HOH . H 6 HOH A 56 656 6 HOH HOH . H 6 HOH A 57 657 118 HOH HOH . H 6 HOH A 58 658 52 HOH HOH . H 6 HOH A 59 659 88 HOH HOH . H 6 HOH A 60 660 45 HOH HOH . H 6 HOH A 61 661 291 HOH HOH . H 6 HOH A 62 662 180 HOH HOH . H 6 HOH A 63 663 49 HOH HOH . H 6 HOH A 64 664 205 HOH HOH . H 6 HOH A 65 665 1 HOH HOH . H 6 HOH A 66 666 31 HOH HOH . H 6 HOH A 67 667 28 HOH HOH . H 6 HOH A 68 668 156 HOH HOH . H 6 HOH A 69 669 146 HOH HOH . H 6 HOH A 70 670 91 HOH HOH . H 6 HOH A 71 671 174 HOH HOH . H 6 HOH A 72 672 50 HOH HOH . H 6 HOH A 73 673 105 HOH HOH . H 6 HOH A 74 674 249 HOH HOH . H 6 HOH A 75 675 3 HOH HOH . H 6 HOH A 76 676 126 HOH HOH . H 6 HOH A 77 677 57 HOH HOH . H 6 HOH A 78 678 214 HOH HOH . H 6 HOH A 79 679 26 HOH HOH . H 6 HOH A 80 680 11 HOH HOH . H 6 HOH A 81 681 276 HOH HOH . H 6 HOH A 82 682 41 HOH HOH . H 6 HOH A 83 683 142 HOH HOH . H 6 HOH A 84 684 114 HOH HOH . H 6 HOH A 85 685 95 HOH HOH . H 6 HOH A 86 686 48 HOH HOH . H 6 HOH A 87 687 58 HOH HOH . H 6 HOH A 88 688 167 HOH HOH . H 6 HOH A 89 689 309 HOH HOH . H 6 HOH A 90 690 4 HOH HOH . H 6 HOH A 91 691 177 HOH HOH . H 6 HOH A 92 692 108 HOH HOH . H 6 HOH A 93 693 53 HOH HOH . H 6 HOH A 94 694 73 HOH HOH . H 6 HOH A 95 695 2 HOH HOH . H 6 HOH A 96 696 16 HOH HOH . H 6 HOH A 97 697 42 HOH HOH . H 6 HOH A 98 698 90 HOH HOH . H 6 HOH A 99 699 82 HOH HOH . H 6 HOH A 100 700 43 HOH HOH . H 6 HOH A 101 701 190 HOH HOH . H 6 HOH A 102 702 195 HOH HOH . H 6 HOH A 103 703 33 HOH HOH . H 6 HOH A 104 704 27 HOH HOH . H 6 HOH A 105 705 14 HOH HOH . H 6 HOH A 106 706 360 HOH HOH . H 6 HOH A 107 707 97 HOH HOH . H 6 HOH A 108 708 56 HOH HOH . H 6 HOH A 109 709 25 HOH HOH . H 6 HOH A 110 710 71 HOH HOH . H 6 HOH A 111 711 7 HOH HOH . H 6 HOH A 112 712 8 HOH HOH . H 6 HOH A 113 713 13 HOH HOH . H 6 HOH A 114 714 62 HOH HOH . H 6 HOH A 115 715 259 HOH HOH . H 6 HOH A 116 716 138 HOH HOH . H 6 HOH A 117 717 183 HOH HOH . H 6 HOH A 118 718 363 HOH HOH . H 6 HOH A 119 719 140 HOH HOH . H 6 HOH A 120 720 225 HOH HOH . H 6 HOH A 121 721 74 HOH HOH . H 6 HOH A 122 722 294 HOH HOH . H 6 HOH A 123 723 119 HOH HOH . H 6 HOH A 124 724 168 HOH HOH . H 6 HOH A 125 725 22 HOH HOH . H 6 HOH A 126 726 29 HOH HOH . H 6 HOH A 127 727 262 HOH HOH . H 6 HOH A 128 728 34 HOH HOH . H 6 HOH A 129 729 161 HOH HOH . H 6 HOH A 130 730 141 HOH HOH . H 6 HOH A 131 731 216 HOH HOH . H 6 HOH A 132 732 93 HOH HOH . H 6 HOH A 133 733 162 HOH HOH . H 6 HOH A 134 734 139 HOH HOH . H 6 HOH A 135 735 92 HOH HOH . H 6 HOH A 136 736 89 HOH HOH . H 6 HOH A 137 737 80 HOH HOH . H 6 HOH A 138 738 301 HOH HOH . H 6 HOH A 139 739 310 HOH HOH . H 6 HOH A 140 740 65 HOH HOH . H 6 HOH A 141 741 169 HOH HOH . H 6 HOH A 142 742 70 HOH HOH . H 6 HOH A 143 743 221 HOH HOH . H 6 HOH A 144 744 103 HOH HOH . H 6 HOH A 145 745 123 HOH HOH . H 6 HOH A 146 746 144 HOH HOH . H 6 HOH A 147 747 67 HOH HOH . H 6 HOH A 148 748 38 HOH HOH . H 6 HOH A 149 749 224 HOH HOH . H 6 HOH A 150 750 133 HOH HOH . H 6 HOH A 151 751 285 HOH HOH . H 6 HOH A 152 752 334 HOH HOH . H 6 HOH A 153 753 46 HOH HOH . H 6 HOH A 154 754 211 HOH HOH . H 6 HOH A 155 755 32 HOH HOH . H 6 HOH A 156 756 212 HOH HOH . H 6 HOH A 157 757 117 HOH HOH . H 6 HOH A 158 758 304 HOH HOH . H 6 HOH A 159 759 272 HOH HOH . H 6 HOH A 160 760 116 HOH HOH . H 6 HOH A 161 761 104 HOH HOH . H 6 HOH A 162 762 17 HOH HOH . H 6 HOH A 163 763 288 HOH HOH . H 6 HOH A 164 764 253 HOH HOH . H 6 HOH A 165 765 39 HOH HOH . H 6 HOH A 166 766 61 HOH HOH . H 6 HOH A 167 767 35 HOH HOH . H 6 HOH A 168 768 149 HOH HOH . H 6 HOH A 169 769 227 HOH HOH . H 6 HOH A 170 770 267 HOH HOH . H 6 HOH A 171 771 77 HOH HOH . H 6 HOH A 172 772 130 HOH HOH . H 6 HOH A 173 773 152 HOH HOH . H 6 HOH A 174 774 346 HOH HOH . H 6 HOH A 175 775 60 HOH HOH . H 6 HOH A 176 776 357 HOH HOH . H 6 HOH A 177 777 359 HOH HOH . H 6 HOH A 178 778 201 HOH HOH . H 6 HOH A 179 779 203 HOH HOH . H 6 HOH A 180 780 191 HOH HOH . H 6 HOH A 181 781 127 HOH HOH . H 6 HOH A 182 782 157 HOH HOH . H 6 HOH A 183 783 196 HOH HOH . H 6 HOH A 184 784 87 HOH HOH . H 6 HOH A 185 785 102 HOH HOH . H 6 HOH A 186 786 106 HOH HOH . H 6 HOH A 187 787 137 HOH HOH . H 6 HOH A 188 788 165 HOH HOH . H 6 HOH A 189 789 132 HOH HOH . H 6 HOH A 190 790 153 HOH HOH . H 6 HOH A 191 791 194 HOH HOH . H 6 HOH A 192 792 355 HOH HOH . H 6 HOH A 193 793 170 HOH HOH . H 6 HOH A 194 794 331 HOH HOH . H 6 HOH A 195 795 264 HOH HOH . H 6 HOH A 196 796 222 HOH HOH . H 6 HOH A 197 797 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . F 4 34.756 49.427 21.715 1 101.12 ? P PO4 505 A 1 HETATM 2 O O1 PO4 . . . F 4 35.377 49.863 20.444 1 99.69 ? O1 PO4 505 A 1 HETATM 3 O O2 PO4 . . . F 4 33.31 49.183 21.483 1 100.89 ? O2 PO4 505 A 1 HETATM 4 O O3 PO4 . . . F 4 35.425 48.179 22.168 1 99.65 ? O3 PO4 505 A 1 HETATM 5 O O4 PO4 . . . F 4 34.85 50.497 22.738 1 99.64 ? O4 PO4 505 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 5 #