data_5X24 # _model_server_result.job_id 79I_XDG4K_MUwlAs8doSvQ _model_server_result.datetime_utc '2024-12-04 18:33:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x24 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5X24 # _exptl.entry_id 5X24 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5X24 _cell.length_a 74.858 _cell.length_b 141.777 _cell.length_c 160.656 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X24 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 417 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 435 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.269 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 5X24 _atom_sites.fract_transf_matrix[1][1] 0.013359 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007053 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006224 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 500 HEM HEM . C 3 LSN A 1 502 501 LSN lsn . D 3 LSN A 1 503 502 LSN lsn . E 4 PO4 A 1 504 1 PO4 PO4 . F 5 K A 1 505 1 K K . G 6 HOH A 1 601 3 HOH HOH . G 6 HOH A 2 602 119 HOH HOH . G 6 HOH A 3 603 118 HOH HOH . G 6 HOH A 4 604 62 HOH HOH . G 6 HOH A 5 605 85 HOH HOH . G 6 HOH A 6 606 23 HOH HOH . G 6 HOH A 7 607 90 HOH HOH . G 6 HOH A 8 608 56 HOH HOH . G 6 HOH A 9 609 60 HOH HOH . G 6 HOH A 10 610 102 HOH HOH . G 6 HOH A 11 611 122 HOH HOH . G 6 HOH A 12 612 49 HOH HOH . G 6 HOH A 13 613 58 HOH HOH . G 6 HOH A 14 614 25 HOH HOH . G 6 HOH A 15 615 63 HOH HOH . G 6 HOH A 16 616 20 HOH HOH . G 6 HOH A 17 617 6 HOH HOH . G 6 HOH A 18 618 55 HOH HOH . G 6 HOH A 19 619 24 HOH HOH . G 6 HOH A 20 620 105 HOH HOH . G 6 HOH A 21 621 93 HOH HOH . G 6 HOH A 22 622 66 HOH HOH . G 6 HOH A 23 623 101 HOH HOH . G 6 HOH A 24 624 92 HOH HOH . G 6 HOH A 25 625 125 HOH HOH . G 6 HOH A 26 626 111 HOH HOH . G 6 HOH A 27 627 38 HOH HOH . G 6 HOH A 28 628 1 HOH HOH . G 6 HOH A 29 629 110 HOH HOH . G 6 HOH A 30 630 112 HOH HOH . G 6 HOH A 31 631 117 HOH HOH . G 6 HOH A 32 632 96 HOH HOH . G 6 HOH A 33 633 115 HOH HOH . G 6 HOH A 34 634 108 HOH HOH . G 6 HOH A 35 635 120 HOH HOH . G 6 HOH A 36 636 95 HOH HOH . G 6 HOH A 37 637 114 HOH HOH . G 6 HOH A 38 638 113 HOH HOH . G 6 HOH A 39 639 126 HOH HOH . G 6 HOH A 40 640 27 HOH HOH . G 6 HOH A 41 641 121 HOH HOH . G 6 HOH A 42 642 16 HOH HOH . G 6 HOH A 43 643 116 HOH HOH . G 6 HOH A 44 644 39 HOH HOH . G 6 HOH A 45 645 123 HOH HOH . G 6 HOH A 46 646 104 HOH HOH . G 6 HOH A 47 647 99 HOH HOH . G 6 HOH A 48 648 109 HOH HOH . G 6 HOH A 49 649 86 HOH HOH . G 6 HOH A 50 650 19 HOH HOH . G 6 HOH A 51 651 30 HOH HOH . G 6 HOH A 52 652 98 HOH HOH . G 6 HOH A 53 653 100 HOH HOH . G 6 HOH A 54 654 103 HOH HOH . G 6 HOH A 55 655 97 HOH HOH . G 6 HOH A 56 656 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 23.034 -21.032 -26.334 1 33.8 ? CHA HEM 501 A 1 HETATM 2 C CHB HEM . . . B 2 27.01 -23.574 -26.555 1 35.4 ? CHB HEM 501 A 1 HETATM 3 C CHC HEM . . . B 2 27.114 -22.827 -31.277 1 35.22 ? CHC HEM 501 A 1 HETATM 4 C CHD HEM . . . B 2 22.98 -20.553 -31.064 1 33.67 ? CHD HEM 501 A 1 HETATM 5 C C1A HEM . . . B 2 24.128 -21.75 -26.005 1 35.93 ? C1A HEM 501 A 1 HETATM 6 C C2A HEM . . . B 2 24.461 -22.065 -24.692 1 32.44 ? C2A HEM 501 A 1 HETATM 7 C C3A HEM . . . B 2 25.586 -22.771 -24.763 1 33.1 ? C3A HEM 501 A 1 HETATM 8 C C4A HEM . . . B 2 25.92 -22.909 -26.101 1 36.2 ? C4A HEM 501 A 1 HETATM 9 C CMA HEM . . . B 2 26.337 -23.333 -23.606 1 30.48 ? CMA HEM 501 A 1 HETATM 10 C CAA HEM . . . B 2 23.742 -21.646 -23.431 1 33.11 ? CAA HEM 501 A 1 HETATM 11 C CBA HEM . . . B 2 22.61 -22.515 -22.905 1 39.16 ? CBA HEM 501 A 1 HETATM 12 C CGA HEM . . . B 2 21.97 -21.923 -21.673 1 44.01 ? CGA HEM 501 A 1 HETATM 13 O O1A HEM . . . B 2 22.032 -22.46 -20.58 1 42.82 ? O1A HEM 501 A 1 HETATM 14 O O2A HEM . . . B 2 21.337 -20.879 -21.708 1 41.41 ? O2A HEM 501 A 1 HETATM 15 C C1B HEM . . . B 2 27.367 -23.541 -27.881 1 33.5 ? C1B HEM 501 A 1 HETATM 16 C C2B HEM . . . B 2 28.548 -24.113 -28.335 1 35.86 ? C2B HEM 501 A 1 HETATM 17 C C3B HEM . . . B 2 28.589 -23.913 -29.654 1 33.54 ? C3B HEM 501 A 1 HETATM 18 C C4B HEM . . . B 2 27.391 -23.192 -29.987 1 33.54 ? C4B HEM 501 A 1 HETATM 19 C CMB HEM . . . B 2 29.578 -24.822 -27.512 1 35.21 ? CMB HEM 501 A 1 HETATM 20 C CAB HEM . . . B 2 29.606 -24.303 -30.613 1 32.93 ? CAB HEM 501 A 1 HETATM 21 C CBB HEM . . . B 2 30.487 -25.216 -30.327 1 37.14 ? CBB HEM 501 A 1 HETATM 22 C C1C HEM . . . B 2 25.952 -22.218 -31.643 1 34.41 ? C1C HEM 501 A 1 HETATM 23 C C2C HEM . . . B 2 25.515 -22.091 -32.923 1 30.01 ? C2C HEM 501 A 1 HETATM 24 C C3C HEM . . . B 2 24.343 -21.439 -32.897 1 34.92 ? C3C HEM 501 A 1 HETATM 25 C C4C HEM . . . B 2 24.065 -21.187 -31.542 1 38.53 ? C4C HEM 501 A 1 HETATM 26 C CMC HEM . . . B 2 26.205 -22.568 -34.147 1 28.33 ? CMC HEM 501 A 1 HETATM 27 C CAC HEM . . . B 2 23.616 -21.155 -34.141 1 39.82 ? CAC HEM 501 A 1 HETATM 28 C CBC HEM . . . B 2 22.458 -20.56 -34.209 1 38.43 ? CBC HEM 501 A 1 HETATM 29 C C1D HEM . . . B 2 22.739 -20.525 -29.716 1 34.94 ? C1D HEM 501 A 1 HETATM 30 C C2D HEM . . . B 2 21.592 -19.827 -29.224 1 36.09 ? C2D HEM 501 A 1 HETATM 31 C C3D HEM . . . B 2 21.583 -19.964 -27.921 1 36.58 ? C3D HEM 501 A 1 HETATM 32 C C4D HEM . . . B 2 22.751 -20.74 -27.628 1 32.28 ? C4D HEM 501 A 1 HETATM 33 C CMD HEM . . . B 2 20.59 -19.097 -30.045 1 37.4 ? CMD HEM 501 A 1 HETATM 34 C CAD HEM . . . B 2 20.573 -19.41 -26.948 1 40.15 ? CAD HEM 501 A 1 HETATM 35 C CBD HEM . . . B 2 19.572 -20.475 -26.504 1 41.09 ? CBD HEM 501 A 1 HETATM 36 C CGD HEM . . . B 2 18.471 -20.007 -25.578 1 47.51 ? CGD HEM 501 A 1 HETATM 37 O O1D HEM . . . B 2 18.697 -19.302 -24.614 1 43.35 ? O1D HEM 501 A 1 HETATM 38 O O2D HEM . . . B 2 17.309 -20.37 -25.729 1 42.76 ? O2D HEM 501 A 1 HETATM 39 N NA HEM . . . B 2 25.046 -22.244 -26.87 1 32.82 ? NA HEM 501 A 1 HETATM 40 N NB HEM . . . B 2 26.725 -23.008 -28.884 1 32.49 ? NB HEM 501 A 1 HETATM 41 N NC HEM . . . B 2 25.067 -21.7 -30.804 1 33.43 ? NC HEM 501 A 1 HETATM 42 N ND HEM . . . B 2 23.414 -21.067 -28.719 1 32 ? ND HEM 501 A 1 HETATM 43 FE FE HEM . . . B 2 24.943 -22.053 -28.789 1 38.34 ? FE HEM 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #