data_5X27 # _model_server_result.job_id m3ef1er-N573E8CK_mbK4A _model_server_result.datetime_utc '2024-11-27 18:55:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x27 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 5X27 # _exptl.entry_id 5X27 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 468.597 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-cyclopentyl-N2-[4-(4-methylpiperazin-1-yl)phenyl]-N8-phenyl-purine-2,8-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5X27 _cell.length_a 145.384 _cell.length_b 145.384 _cell.length_c 145.384 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X27 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H32 N8' _chem_comp.formula_weight 468.597 _chem_comp.id 7XR _chem_comp.mon_nstd_flag . _chem_comp.name 9-cyclopentyl-N2-[4-(4-methylpiperazin-1-yl)phenyl]-N8-phenyl-purine-2,8-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAB CAD 7XR doub 1 n y CAB CAC 7XR sing 2 n y CAD CAF 7XR sing 3 n y CAC CAE 7XR doub 4 n y CAF CAY 7XR doub 5 n y CAE CAY 7XR sing 6 n y CAY NAX 7XR sing 7 n n NAX C8 7XR sing 8 n n N7 C8 7XR doub 9 n y N7 C5 7XR sing 10 n y C8 N9 7XR sing 11 n y C5 C6 7XR doub 12 n y C5 C4 7XR sing 13 n y N9 CBF 7XR sing 14 n n N9 C4 7XR sing 15 n y C6 N1 7XR sing 16 n y CBF CAO 7XR sing 17 n n CBF CAN 7XR sing 18 n n C4 N3 7XR doub 19 n y CAO CAM 7XR sing 20 n n CAN CAL 7XR sing 21 n n N1 C2 7XR doub 22 n y N3 C2 7XR sing 23 n y CAM CAL 7XR sing 24 n n C2 N2 7XR sing 25 n n N2 CAZ 7XR sing 26 n n CAG CAZ 7XR doub 27 n y CAG CAI 7XR sing 28 n y CAZ CAH 7XR sing 29 n y CAI CBA 7XR doub 30 n y CAH CAJ 7XR doub 31 n y CBA CAJ 7XR sing 32 n y CBA NBH 7XR sing 33 n n CAR NBH 7XR sing 34 n n CAR CAP 7XR sing 35 n n NBH CAS 7XR sing 36 n n CAP NBG 7XR sing 37 n n CAS CAQ 7XR sing 38 n n NBG CAQ 7XR sing 39 n n NBG CAA 7XR sing 40 n n C6 H1 7XR sing 41 n n N2 H2 7XR sing 42 n n CAR H3 7XR sing 43 n n CAR H4 7XR sing 44 n n CAP H5 7XR sing 45 n n CAP H6 7XR sing 46 n n CAA H8 7XR sing 47 n n CAA H9 7XR sing 48 n n CAA H10 7XR sing 49 n n CAQ H11 7XR sing 50 n n CAQ H12 7XR sing 51 n n CAS H13 7XR sing 52 n n CAS H14 7XR sing 53 n n CAJ H15 7XR sing 54 n n CAH H16 7XR sing 55 n n CAI H17 7XR sing 56 n n CAG H18 7XR sing 57 n n CBF H19 7XR sing 58 n n CAN H20 7XR sing 59 n n CAN H21 7XR sing 60 n n CAL H22 7XR sing 61 n n CAL H23 7XR sing 62 n n CAM H24 7XR sing 63 n n CAM H25 7XR sing 64 n n CAO H26 7XR sing 65 n n CAO H27 7XR sing 66 n n NAX H28 7XR sing 67 n n CAE H29 7XR sing 68 n n CAC H30 7XR sing 69 n n CAB H31 7XR sing 70 n n CAD H32 7XR sing 71 n n CAF H33 7XR sing 72 n n # _atom_sites.entry_id 5X27 _atom_sites.fract_transf_matrix[1][1] 0.006878 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006878 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006878 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7XR A 1 1101 1 7XR DRG . C 3 CL A 1 1102 1 CL CL . D 4 HOH A 1 1201 3 HOH HOH . D 4 HOH A 2 1202 22 HOH HOH . D 4 HOH A 3 1203 10 HOH HOH . D 4 HOH A 4 1204 29 HOH HOH . D 4 HOH A 5 1205 8 HOH HOH . D 4 HOH A 6 1206 1 HOH HOH . D 4 HOH A 7 1207 32 HOH HOH . D 4 HOH A 8 1208 28 HOH HOH . D 4 HOH A 9 1209 7 HOH HOH . D 4 HOH A 10 1210 25 HOH HOH . D 4 HOH A 11 1211 20 HOH HOH . D 4 HOH A 12 1212 27 HOH HOH . D 4 HOH A 13 1213 24 HOH HOH . D 4 HOH A 14 1214 11 HOH HOH . D 4 HOH A 15 1215 6 HOH HOH . D 4 HOH A 16 1216 14 HOH HOH . D 4 HOH A 17 1217 26 HOH HOH . D 4 HOH A 18 1218 31 HOH HOH . D 4 HOH A 19 1219 23 HOH HOH . D 4 HOH A 20 1220 9 HOH HOH . D 4 HOH A 21 1221 15 HOH HOH . D 4 HOH A 22 1222 30 HOH HOH . D 4 HOH A 23 1223 12 HOH HOH . D 4 HOH A 24 1224 19 HOH HOH . D 4 HOH A 25 1225 21 HOH HOH . D 4 HOH A 26 1226 2 HOH HOH . D 4 HOH A 27 1227 17 HOH HOH . D 4 HOH A 28 1228 13 HOH HOH . D 4 HOH A 29 1229 5 HOH HOH . D 4 HOH A 30 1230 16 HOH HOH . D 4 HOH A 31 1231 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 7XR . . . B 2 -52.495 -0.193 -21.72 1 52.16 ? C4 7XR 1101 A 1 HETATM 2 C C5 7XR . . . B 2 -53.326 0.476 -22.579 1 50.59 ? C5 7XR 1101 A 1 HETATM 3 C C6 7XR . . . B 2 -54.249 1.352 -22.077 1 48.06 ? C6 7XR 1101 A 1 HETATM 4 C C8 7XR . . . B 2 -52.067 -0.766 -23.735 1 61.5 ? C8 7XR 1101 A 1 HETATM 5 N N1 7XR . . . B 2 -54.313 1.524 -20.79 1 46.24 ? N1 7XR 1101 A 1 HETATM 6 N N2 7XR . . . B 2 -53.651 1.115 -18.696 1 49.61 ? N2 7XR 1101 A 1 HETATM 7 N N3 7XR . . . B 2 -52.599 0.009 -20.41 1 50.49 ? N3 7XR 1101 A 1 HETATM 8 C CAR 7XR . . . B 2 -49.088 -1.295 -14.97 1 63.43 ? CAR 7XR 1101 A 1 HETATM 9 C CAP 7XR . . . B 2 -49.038 -2.42 -13.955 1 72.32 ? CAP 7XR 1101 A 1 HETATM 10 N NBG 7XR . . . B 2 -49.223 -1.859 -12.621 1 73.34 ? NBG 7XR 1101 A 1 HETATM 11 C CAA 7XR . . . B 2 -49.035 -2.917 -11.632 1 73.62 ? CAA 7XR 1101 A 1 HETATM 12 C CAQ 7XR . . . B 2 -50.581 -1.351 -12.503 1 66.15 ? CAQ 7XR 1101 A 1 HETATM 13 C CAS 7XR . . . B 2 -50.709 -0.137 -13.396 1 59.04 ? CAS 7XR 1101 A 1 HETATM 14 N NBH 7XR . . . B 2 -50.304 -0.51 -14.747 1 61.05 ? NBH 7XR 1101 A 1 HETATM 15 C CBA 7XR . . . B 2 -51.119 -0.123 -15.79 1 59.82 ? CBA 7XR 1101 A 1 HETATM 16 C CAJ 7XR . . . B 2 -52.167 0.712 -15.488 1 54.87 ? CAJ 7XR 1101 A 1 HETATM 17 C CAH 7XR . . . B 2 -53.011 1.122 -16.492 1 53.83 ? CAH 7XR 1101 A 1 HETATM 18 C CAI 7XR . . . B 2 -50.909 -0.554 -17.087 1 55.74 ? CAI 7XR 1101 A 1 HETATM 19 C CAG 7XR . . . B 2 -51.762 -0.139 -18.096 1 51.49 ? CAG 7XR 1101 A 1 HETATM 20 C CAZ 7XR . . . B 2 -52.81 0.697 -17.785 1 53.38 ? CAZ 7XR 1101 A 1 HETATM 21 C C2 7XR . . . B 2 -53.508 0.871 -19.969 1 49.25 ? C2 7XR 1101 A 1 HETATM 22 N N7 7XR . . . B 2 -53.041 0.108 -23.812 1 58.88 ? N7 7XR 1101 A 1 HETATM 23 N N9 7XR . . . B 2 -51.74 -0.956 -22.479 1 57.62 ? N9 7XR 1101 A 1 HETATM 24 C CBF 7XR . . . B 2 -50.688 -1.838 -22.006 1 59.65 ? CBF 7XR 1101 A 1 HETATM 25 C CAN 7XR . . . B 2 -51.234 -2.835 -21.009 1 61.25 ? CAN 7XR 1101 A 1 HETATM 26 C CAL 7XR . . . B 2 -50.075 -3.107 -20.056 1 56.21 ? CAL 7XR 1101 A 1 HETATM 27 C CAM 7XR . . . B 2 -49.008 -2.074 -20.393 1 56.69 ? CAM 7XR 1101 A 1 HETATM 28 C CAO 7XR . . . B 2 -49.766 -1.007 -21.146 1 58.2 ? CAO 7XR 1101 A 1 HETATM 29 N NAX 7XR . . . B 2 -51.544 -1.338 -24.795 1 64.32 ? NAX 7XR 1101 A 1 HETATM 30 C CAY 7XR . . . B 2 -51.927 -0.873 -25.971 1 57.61 ? CAY 7XR 1101 A 1 HETATM 31 C CAE 7XR . . . B 2 -52.128 0.482 -26.124 1 55.44 ? CAE 7XR 1101 A 1 HETATM 32 C CAC 7XR . . . B 2 -52.531 0.998 -27.342 1 57.44 ? CAC 7XR 1101 A 1 HETATM 33 C CAB 7XR . . . B 2 -52.739 0.15 -28.409 1 57.03 ? CAB 7XR 1101 A 1 HETATM 34 C CAD 7XR . . . B 2 -52.545 -1.208 -28.252 1 59.56 ? CAD 7XR 1101 A 1 HETATM 35 C CAF 7XR . . . B 2 -52.137 -1.723 -27.035 1 60.4 ? CAF 7XR 1101 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #