data_5X28
#
_model_server_result.job_id            bO_iYgGMDtALii8TDp9N7g 
_model_server_result.datetime_utc      '2025-07-16 14:43:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5x28 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1101}' 
#
_entry.id    5X28 
#
_exptl.entry_id    5X28 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              482.623 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            9-cyclohexyl-N2-[4-(4-methylpiperazin-1-yl)phenyl]-N8-phenyl-purine-2,8-diamine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5X28 
_cell.length_a            145.513 
_cell.length_b            145.513 
_cell.length_c            145.513 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5X28 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C28 H34 N8' 
_chem_comp.formula_weight    482.623 
_chem_comp.id                7XU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              9-cyclohexyl-N2-[4-(4-methylpiperazin-1-yl)phenyl]-N8-phenyl-purine-2,8-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAB CAD 7XU doub 1 n y 
CAB CAC 7XU sing 2 n y 
CAD CAF 7XU sing 3 n y 
CAC CAE 7XU doub 4 n y 
CAF CAZ 7XU doub 5 n y 
CAE CAZ 7XU sing 6 n y 
CAZ NAY 7XU sing 7 n n 
NAY C8 7XU sing 8 n n 
C8 N7 7XU doub 9 n y 
C8 N9 7XU sing 10 n y 
N7 C5 7XU sing 11 n y 
N9 CBG 7XU sing 12 n n 
N9 C4 7XU sing 13 n y 
C5 C6 7XU doub 14 n y 
C5 C4 7XU sing 15 n y 
CBG CAO 7XU sing 16 n n 
CBG CAP 7XU sing 17 n n 
CAO CAM 7XU sing 18 n n 
CAM CAL 7XU sing 19 n n 
C6 N1 7XU sing 20 n y 
C4 N3 7XU doub 21 n y 
CAP CAN 7XU sing 22 n n 
CAL CAN 7XU sing 23 n n 
N1 C2 7XU doub 24 n y 
N3 C2 7XU sing 25 n y 
C2 N2 7XU sing 26 n n 
N2 CBA 7XU sing 27 n n 
CAG CBA 7XU doub 28 n y 
CAG CAI 7XU sing 29 n y 
CBA CAH 7XU sing 30 n y 
CAI CBB 7XU doub 31 n y 
CAH CAJ 7XU doub 32 n y 
CBB CAJ 7XU sing 33 n y 
CBB NBI 7XU sing 34 n n 
CAS NBI 7XU sing 35 n n 
CAS CAQ 7XU sing 36 n n 
NBI CAT 7XU sing 37 n n 
CAQ NBH 7XU sing 38 n n 
CAT CAR 7XU sing 39 n n 
NBH CAR 7XU sing 40 n n 
NBH CAA 7XU sing 41 n n 
C6 H1 7XU sing 42 n n 
N2 H2 7XU sing 43 n n 
CAS H3 7XU sing 44 n n 
CAS H4 7XU sing 45 n n 
CAQ H5 7XU sing 46 n n 
CAQ H6 7XU sing 47 n n 
CAA H8 7XU sing 48 n n 
CAA H9 7XU sing 49 n n 
CAA H10 7XU sing 50 n n 
CAR H11 7XU sing 51 n n 
CAR H12 7XU sing 52 n n 
CAT H13 7XU sing 53 n n 
CAT H14 7XU sing 54 n n 
CAJ H15 7XU sing 55 n n 
CAH H16 7XU sing 56 n n 
CAI H17 7XU sing 57 n n 
CAG H18 7XU sing 58 n n 
CBG H19 7XU sing 59 n n 
CAO H20 7XU sing 60 n n 
CAO H21 7XU sing 61 n n 
CAM H22 7XU sing 62 n n 
CAM H23 7XU sing 63 n n 
CAL H24 7XU sing 64 n n 
CAL H25 7XU sing 65 n n 
CAN H26 7XU sing 66 n n 
CAN H27 7XU sing 67 n n 
CAP H28 7XU sing 68 n n 
CAP H29 7XU sing 69 n n 
NAY H30 7XU sing 70 n n 
CAE H31 7XU sing 71 n n 
CAC H32 7XU sing 72 n n 
CAB H33 7XU sing 73 n n 
CAD H34 7XU sing 74 n n 
CAF H35 7XU sing 75 n n 
#
_atom_sites.entry_id                     5X28 
_atom_sites.fract_transf_matrix[1][1]    0.006872 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006872 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006872 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 7XU A 1 1101 1 7XU DRG . 
C 3 CL A 1 1102 1 CL CL . 
D 4 HOH A 1 1201 42 HOH HOH . 
D 4 HOH A 2 1202 34 HOH HOH . 
D 4 HOH A 3 1203 33 HOH HOH . 
D 4 HOH A 4 1204 10 HOH HOH . 
D 4 HOH A 5 1205 36 HOH HOH . 
D 4 HOH A 6 1206 30 HOH HOH . 
D 4 HOH A 7 1207 29 HOH HOH . 
D 4 HOH A 8 1208 37 HOH HOH . 
D 4 HOH A 9 1209 23 HOH HOH . 
D 4 HOH A 10 1210 24 HOH HOH . 
D 4 HOH A 11 1211 31 HOH HOH . 
D 4 HOH A 12 1212 8 HOH HOH . 
D 4 HOH A 13 1213 25 HOH HOH . 
D 4 HOH A 14 1214 26 HOH HOH . 
D 4 HOH A 15 1215 28 HOH HOH . 
D 4 HOH A 16 1216 1 HOH HOH . 
D 4 HOH A 17 1217 22 HOH HOH . 
D 4 HOH A 18 1218 41 HOH HOH . 
D 4 HOH A 19 1219 43 HOH HOH . 
D 4 HOH A 20 1220 15 HOH HOH . 
D 4 HOH A 21 1221 38 HOH HOH . 
D 4 HOH A 22 1222 11 HOH HOH . 
D 4 HOH A 23 1223 13 HOH HOH . 
D 4 HOH A 24 1224 6 HOH HOH . 
D 4 HOH A 25 1225 12 HOH HOH . 
D 4 HOH A 26 1226 2 HOH HOH . 
D 4 HOH A 27 1227 45 HOH HOH . 
D 4 HOH A 28 1228 14 HOH HOH . 
D 4 HOH A 29 1229 32 HOH HOH . 
D 4 HOH A 30 1230 46 HOH HOH . 
D 4 HOH A 31 1231 27 HOH HOH . 
D 4 HOH A 32 1232 39 HOH HOH . 
D 4 HOH A 33 1233 19 HOH HOH . 
D 4 HOH A 34 1234 3 HOH HOH . 
D 4 HOH A 35 1235 40 HOH HOH . 
D 4 HOH A 36 1236 5 HOH HOH . 
D 4 HOH A 37 1237 21 HOH HOH . 
D 4 HOH A 38 1238 44 HOH HOH . 
D 4 HOH A 39 1239 17 HOH HOH . 
D 4 HOH A 40 1240 9 HOH HOH . 
D 4 HOH A 41 1241 16 HOH HOH . 
D 4 HOH A 42 1242 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 7XU . . . B 2 -52.661 0.144 -21.893 1 60 ? C4 7XU 1101 A 1 
HETATM 2 C C5 7XU . . . B 2 -53.614 0.789 -22.647 1 58.05 ? C5 7XU 1101 A 1 
HETATM 3 C C6 7XU . . . B 2 -54.585 1.515 -22.009 1 56.76 ? C6 7XU 1101 A 1 
HETATM 4 C C8 7XU . . . B 2 -52.303 -0.209 -23.971 1 63.68 ? C8 7XU 1101 A 1 
HETATM 5 N N1 7XU . . . B 2 -54.572 1.571 -20.707 1 54.15 ? N1 7XU 1101 A 1 
HETATM 6 N N2 7XU . . . B 2 -53.737 1.065 -18.69 1 60.17 ? N2 7XU 1101 A 1 
HETATM 7 N N3 7XU . . . B 2 -52.689 0.228 -20.565 1 58.58 ? N3 7XU 1101 A 1 
HETATM 8 C CAS 7XU . . . B 2 -49.191 -1.644 -15.092 1 78.54 ? CAS 7XU 1101 A 1 
HETATM 9 C CAQ 7XU . . . B 2 -49.439 -2.567 -13.908 1 85.01 ? CAQ 7XU 1101 A 1 
HETATM 10 N NBH 7XU . . . B 2 -49.394 -1.818 -12.649 1 87.94 ? NBH 7XU 1101 A 1 
HETATM 11 C CAA 7XU . . . B 2 -49.705 -2.731 -11.549 1 89 ? CAA 7XU 1101 A 1 
HETATM 12 C CAR 7XU . . . B 2 -50.395 -0.754 -12.621 1 84.26 ? CAR 7XU 1101 A 1 
HETATM 13 C CAT 7XU . . . B 2 -50.05 0.249 -13.699 1 76.7 ? CAT 7XU 1101 A 1 
HETATM 14 N NBI 7XU . . . B 2 -50.074 -0.485 -14.955 1 78.2 ? NBI 7XU 1101 A 1 
HETATM 15 C CBB 7XU . . . B 2 -50.981 -0.116 -15.94 1 73.23 ? CBB 7XU 1101 A 1 
HETATM 16 C CAJ 7XU . . . B 2 -51.974 0.777 -15.602 1 69.15 ? CAJ 7XU 1101 A 1 
HETATM 17 C CAH 7XU . . . B 2 -52.894 1.163 -16.551 1 62.25 ? CAH 7XU 1101 A 1 
HETATM 18 C CAI 7XU . . . B 2 -50.913 -0.624 -17.226 1 67.66 ? CAI 7XU 1101 A 1 
HETATM 19 C CAG 7XU . . . B 2 -51.84 -0.232 -18.182 1 61.53 ? CAG 7XU 1101 A 1 
HETATM 20 C CBA 7XU . . . B 2 -52.827 0.663 -17.834 1 62.2 ? CBA 7XU 1101 A 1 
HETATM 21 C C2 7XU . . . B 2 -53.647 0.945 -19.991 1 57.33 ? C2 7XU 1101 A 1 
HETATM 22 N N7 7XU . . . B 2 -53.373 0.552 -23.928 1 60.67 ? N7 7XU 1101 A 1 
HETATM 23 N N9 7XU . . . B 2 -51.886 -0.462 -22.76 1 65.82 ? N9 7XU 1101 A 1 
HETATM 24 C CBG 7XU . . . B 2 -50.708 -1.259 -22.476 1 70.77 ? CBG 7XU 1101 A 1 
HETATM 25 C CAO 7XU . . . B 2 -51.029 -2.735 -22.431 1 71.1 ? CAO 7XU 1101 A 1 
HETATM 26 C CAM 7XU . . . B 2 -49.724 -3.496 -22.253 1 76.19 ? CAM 7XU 1101 A 1 
HETATM 27 C CAL 7XU . . . B 2 -49.013 -3.049 -20.98 1 65.57 ? CAL 7XU 1101 A 1 
HETATM 28 C CAN 7XU . . . B 2 -48.803 -1.546 -20.962 1 62.8 ? CAN 7XU 1101 A 1 
HETATM 29 C CAP 7XU . . . B 2 -50.123 -0.836 -21.146 1 67.86 ? CAP 7XU 1101 A 1 
HETATM 30 N NAY 7XU . . . B 2 -51.725 -0.682 -25.05 1 62.02 ? NAY 7XU 1101 A 1 
HETATM 31 C CAZ 7XU . . . B 2 -52.046 -0.244 -26.249 1 61.48 ? CAZ 7XU 1101 A 1 
HETATM 32 C CAE 7XU . . . B 2 -52.214 1.103 -26.478 1 63.65 ? CAE 7XU 1101 A 1 
HETATM 33 C CAC 7XU . . . B 2 -52.542 1.554 -27.744 1 65.36 ? CAC 7XU 1101 A 1 
HETATM 34 C CAB 7XU . . . B 2 -52.703 0.655 -28.779 1 64.21 ? CAB 7XU 1101 A 1 
HETATM 35 C CAD 7XU . . . B 2 -52.537 -0.695 -28.542 1 66.14 ? CAD 7XU 1101 A 1 
HETATM 36 C CAF 7XU . . . B 2 -52.205 -1.144 -27.279 1 66.36 ? CAF 7XU 1101 A 1 
#
_model_server_stats.io_time_ms              139 
_model_server_stats.parse_time_ms           65 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           1274 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           36 
#