data_5X2E # _model_server_result.job_id PeUFWxUnM7ujGHTxPQIZzg _model_server_result.datetime_utc '2024-12-21 17:46:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x2e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 5X2E # _exptl.entry_id 5X2E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5X2E _cell.length_a 47.827 _cell.length_b 47.827 _cell.length_c 42.537 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X2E _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 11 A ASP 12 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc2 A OD1 ASP 13 A ASP 14 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc3 A OG1 THR 15 A THR 16 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc4 A O VAL 17 A VAL 18 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc5 A OE1 GLU 22 A GLU 23 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc6 A OE2 GLU 22 A GLU 23 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc7 B CA CA . A CA 101 1_555 C O HOH . A HOH 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5X2E _atom_sites.fract_transf_matrix[1][1] 0.020909 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020909 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023509 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 101 1 CA CA . C 3 HOH A 1 201 100 HOH HOH . C 3 HOH A 2 202 64 HOH HOH . C 3 HOH A 3 203 43 HOH HOH . C 3 HOH A 4 204 72 HOH HOH . C 3 HOH A 5 205 118 HOH HOH . C 3 HOH A 6 206 48 HOH HOH . C 3 HOH A 7 207 30 HOH HOH . C 3 HOH A 8 208 40 HOH HOH . C 3 HOH A 9 209 101 HOH HOH . C 3 HOH A 10 210 90 HOH HOH . C 3 HOH A 11 211 47 HOH HOH . C 3 HOH A 12 212 17 HOH HOH . C 3 HOH A 13 213 69 HOH HOH . C 3 HOH A 14 214 46 HOH HOH . C 3 HOH A 15 215 112 HOH HOH . C 3 HOH A 16 216 50 HOH HOH . C 3 HOH A 17 217 82 HOH HOH . C 3 HOH A 18 218 10 HOH HOH . C 3 HOH A 19 219 83 HOH HOH . C 3 HOH A 20 220 9 HOH HOH . C 3 HOH A 21 221 71 HOH HOH . C 3 HOH A 22 222 39 HOH HOH . C 3 HOH A 23 223 60 HOH HOH . C 3 HOH A 24 224 107 HOH HOH . C 3 HOH A 25 225 6 HOH HOH . C 3 HOH A 26 226 91 HOH HOH . C 3 HOH A 27 227 67 HOH HOH . C 3 HOH A 28 228 94 HOH HOH . C 3 HOH A 29 229 18 HOH HOH . C 3 HOH A 30 230 58 HOH HOH . C 3 HOH A 31 231 76 HOH HOH . C 3 HOH A 32 232 53 HOH HOH . C 3 HOH A 33 233 5 HOH HOH . C 3 HOH A 34 234 24 HOH HOH . C 3 HOH A 35 235 3 HOH HOH . C 3 HOH A 36 236 109 HOH HOH . C 3 HOH A 37 237 38 HOH HOH . C 3 HOH A 38 238 26 HOH HOH . C 3 HOH A 39 239 37 HOH HOH . C 3 HOH A 40 240 52 HOH HOH . C 3 HOH A 41 241 49 HOH HOH . C 3 HOH A 42 242 8 HOH HOH . C 3 HOH A 43 243 103 HOH HOH . C 3 HOH A 44 244 113 HOH HOH . C 3 HOH A 45 245 19 HOH HOH . C 3 HOH A 46 246 4 HOH HOH . C 3 HOH A 47 247 33 HOH HOH . C 3 HOH A 48 248 108 HOH HOH . C 3 HOH A 49 249 41 HOH HOH . C 3 HOH A 50 250 116 HOH HOH . C 3 HOH A 51 251 14 HOH HOH . C 3 HOH A 52 252 22 HOH HOH . C 3 HOH A 53 253 25 HOH HOH . C 3 HOH A 54 254 93 HOH HOH . C 3 HOH A 55 255 1 HOH HOH . C 3 HOH A 56 256 97 HOH HOH . C 3 HOH A 57 257 16 HOH HOH . C 3 HOH A 58 258 13 HOH HOH . C 3 HOH A 59 259 31 HOH HOH . C 3 HOH A 60 260 78 HOH HOH . C 3 HOH A 61 261 114 HOH HOH . C 3 HOH A 62 262 2 HOH HOH . C 3 HOH A 63 263 57 HOH HOH . C 3 HOH A 64 264 54 HOH HOH . C 3 HOH A 65 265 106 HOH HOH . C 3 HOH A 66 266 85 HOH HOH . C 3 HOH A 67 267 80 HOH HOH . C 3 HOH A 68 268 87 HOH HOH . C 3 HOH A 69 269 15 HOH HOH . C 3 HOH A 70 270 74 HOH HOH . C 3 HOH A 71 271 84 HOH HOH . C 3 HOH A 72 272 68 HOH HOH . C 3 HOH A 73 273 88 HOH HOH . C 3 HOH A 74 274 29 HOH HOH . C 3 HOH A 75 275 102 HOH HOH . C 3 HOH A 76 276 98 HOH HOH . C 3 HOH A 77 277 86 HOH HOH . C 3 HOH A 78 278 44 HOH HOH . C 3 HOH A 79 279 56 HOH HOH . C 3 HOH A 80 280 28 HOH HOH . C 3 HOH A 81 281 79 HOH HOH . C 3 HOH A 82 282 42 HOH HOH . C 3 HOH A 83 283 75 HOH HOH . C 3 HOH A 84 284 23 HOH HOH . C 3 HOH A 85 285 27 HOH HOH . C 3 HOH A 86 286 95 HOH HOH . C 3 HOH A 87 287 77 HOH HOH . C 3 HOH A 88 288 11 HOH HOH . C 3 HOH A 89 289 21 HOH HOH . C 3 HOH A 90 290 7 HOH HOH . C 3 HOH A 91 291 65 HOH HOH . C 3 HOH A 92 292 51 HOH HOH . C 3 HOH A 93 293 119 HOH HOH . C 3 HOH A 94 294 20 HOH HOH . C 3 HOH A 95 295 61 HOH HOH . C 3 HOH A 96 296 45 HOH HOH . C 3 HOH A 97 297 105 HOH HOH . C 3 HOH A 98 298 34 HOH HOH . C 3 HOH A 99 299 12 HOH HOH . C 3 HOH A 100 300 92 HOH HOH . C 3 HOH A 101 301 120 HOH HOH . C 3 HOH A 102 302 117 HOH HOH . C 3 HOH A 103 303 32 HOH HOH . C 3 HOH A 104 304 99 HOH HOH . C 3 HOH A 105 305 62 HOH HOH . C 3 HOH A 106 306 104 HOH HOH . C 3 HOH A 107 307 115 HOH HOH . C 3 HOH A 108 308 73 HOH HOH . C 3 HOH A 109 309 111 HOH HOH . C 3 HOH A 110 310 110 HOH HOH . C 3 HOH A 111 311 89 HOH HOH . C 3 HOH A 112 312 36 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -4.588 _atom_site.Cartn_y -5.592 _atom_site.Cartn_z 5.665 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.56 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #