data_5X2R
#
_model_server_result.job_id            EHUxTFRbUGQsRPg1EcOfkg 
_model_server_result.datetime_utc      '2024-10-31 08:28:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5x2r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":201}' 
#
_entry.id    5X2R 
#
_exptl.entry_id    5X2R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.28 
_cell.angle_gamma         90 
_cell.entry_id            5X2R 
_cell.length_a            228.768 
_cell.length_b            55.019 
_cell.length_c            138.426 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5X2R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
PISA tetrameric 4 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,M,N,O,P 1 1 
E,F,G,H,Q,R,S,T 2 1 
I,J,K,L,U,V,W,X 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 N N N 
? 4 O N N 
? 4 R N N 
? 4 S N N 
? 4 V N N 
? 4 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 M NI HNI . A HNI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc2 B NE2 HIS 92 B HIS 92 1_555 N FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc3 C NE2 HIS 87 C HIS 87 1_555 O FE HEM . C HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc4 D NE2 HIS 92 D HIS 92 1_555 P NI HNI . D HNI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc5 F NE2 HIS 92 F HIS 92 1_555 R FE HEM . F HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc6 G NE2 HIS 87 G HIS 87 1_555 S FE HEM . G HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc7 H NE2 HIS 92 H HIS 92 1_555 T NI HNI . H HNI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc8 L NE2 HIS 92 L HIS 92 1_555 X NI HNI . L HNI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     5X2R 
_atom_sites.fract_transf_matrix[1][1]    0.004371 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001032 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018176 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007423 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 HNI A 1 201 142 HNI HNI . 
N 4 HEM B 1 201 147 HEM HEM . 
O 4 HEM C 1 201 142 HEM HEM . 
P 3 HNI D 1 201 147 HNI HNI . 
Q 3 HNI E 1 201 142 HNI HNI . 
R 4 HEM F 1 201 147 HEM HEM . 
S 4 HEM G 1 201 142 HEM HEM . 
T 3 HNI H 1 201 147 HNI HNI . 
U 3 HNI I 1 201 142 HNI HNI . 
V 4 HEM J 1 201 147 HEM HEM . 
W 4 HEM K 1 201 142 HEM HEM . 
X 3 HNI L 1 201 147 HNI HNI . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . V 4 29.073 -21.201 90.268 1 71.51 ? CHA HEM 201 J 1 
HETATM 2 C CHB HEM . . . V 4 27.148 -21.452 85.929 1 70.17 ? CHB HEM 201 J 1 
HETATM 3 C CHC HEM . . . V 4 26.455 -16.789 86.012 1 69.63 ? CHC HEM 201 J 1 
HETATM 4 C CHD HEM . . . V 4 28.427 -16.502 90.298 1 71.23 ? CHD HEM 201 J 1 
HETATM 5 C C1A HEM . . . V 4 28.623 -21.662 89.07 1 70.78 ? C1A HEM 201 J 1 
HETATM 6 C C2A HEM . . . V 4 28.721 -23.015 88.654 1 71.35 ? C2A HEM 201 J 1 
HETATM 7 C C3A HEM . . . V 4 28.153 -23.094 87.438 1 71.02 ? C3A HEM 201 J 1 
HETATM 8 C C4A HEM . . . V 4 27.718 -21.786 87.117 1 70.12 ? C4A HEM 201 J 1 
HETATM 9 C CMA HEM . . . V 4 28.031 -24.333 86.581 1 72.51 ? CMA HEM 201 J 1 
HETATM 10 C CAA HEM . . . V 4 29.335 -24.155 89.438 1 73.22 ? CAA HEM 201 J 1 
HETATM 11 C CBA HEM . . . V 4 28.271 -24.633 90.435 1 74.98 ? CBA HEM 201 J 1 
HETATM 12 C CGA HEM . . . V 4 28.565 -26.016 90.97 1 76.9 ? CGA HEM 201 J 1 
HETATM 13 O O1A HEM . . . V 4 27.981 -26.986 90.521 1 78.55 ? O1A HEM 201 J 1 
HETATM 14 O O2A HEM . . . V 4 29.474 -26.166 91.955 1 78.14 ? O2A HEM 201 J 1 
HETATM 15 C C1B HEM . . . V 4 26.719 -20.183 85.621 1 69.47 ? C1B HEM 201 J 1 
HETATM 16 C C2B HEM . . . V 4 26.042 -19.887 84.398 1 69.36 ? C2B HEM 201 J 1 
HETATM 17 C C3B HEM . . . V 4 25.814 -18.575 84.406 1 69.4 ? C3B HEM 201 J 1 
HETATM 18 C C4B HEM . . . V 4 26.403 -18.107 85.678 1 69.12 ? C4B HEM 201 J 1 
HETATM 19 C CMB HEM . . . V 4 25.639 -20.861 83.318 1 71.12 ? CMB HEM 201 J 1 
HETATM 20 C CAB HEM . . . V 4 25.146 -17.759 83.366 1 70.26 ? CAB HEM 201 J 1 
HETATM 21 C CBB HEM . . . V 4 24.189 -16.877 83.628 1 72.08 ? CBB HEM 201 J 1 
HETATM 22 C C1C HEM . . . V 4 26.981 -16.305 87.16 1 69.2 ? C1C HEM 201 J 1 
HETATM 23 C C2C HEM . . . V 4 27.003 -14.931 87.47 1 69.91 ? C2C HEM 201 J 1 
HETATM 24 C C3C HEM . . . V 4 27.568 -14.821 88.714 1 70.33 ? C3C HEM 201 J 1 
HETATM 25 C C4C HEM . . . V 4 27.858 -16.172 89.116 1 70.12 ? C4C HEM 201 J 1 
HETATM 26 C CMC HEM . . . V 4 26.512 -13.832 86.551 1 71.08 ? CMC HEM 201 J 1 
HETATM 27 C CAC HEM . . . V 4 27.854 -13.611 89.521 1 71.61 ? CAC HEM 201 J 1 
HETATM 28 C CBC HEM . . . V 4 27.905 -12.372 89.031 1 73.58 ? CBC HEM 201 J 1 
HETATM 29 C C1D HEM . . . V 4 28.692 -17.804 90.655 1 70.97 ? C1D HEM 201 J 1 
HETATM 30 C C2D HEM . . . V 4 29.375 -18.106 91.929 1 71.9 ? C2D HEM 201 J 1 
HETATM 31 C C3D HEM . . . V 4 29.524 -19.428 91.945 1 72.06 ? C3D HEM 201 J 1 
HETATM 32 C C4D HEM . . . V 4 28.95 -19.901 90.669 1 71.1 ? C4D HEM 201 J 1 
HETATM 33 C CMD HEM . . . V 4 29.791 -17.098 92.962 1 73.94 ? CMD HEM 201 J 1 
HETATM 34 C CAD HEM . . . V 4 30.206 -20.289 92.99 1 73.6 ? CAD HEM 201 J 1 
HETATM 35 C CBD HEM . . . V 4 31.611 -20.621 92.472 1 74.69 ? CBD HEM 201 J 1 
HETATM 36 C CGD HEM . . . V 4 32.525 -21.234 93.494 1 76.57 ? CGD HEM 201 J 1 
HETATM 37 O O1D HEM . . . V 4 32.258 -22.309 93.985 1 77.47 ? O1D HEM 201 J 1 
HETATM 38 O O2D HEM . . . V 4 33.644 -20.567 93.839 1 77.72 ? O2D HEM 201 J 1 
HETATM 39 N NA HEM . . . V 4 27.962 -20.886 88.143 1 70.22 ? NA HEM 201 J 1 
HETATM 40 N NB HEM . . . V 4 26.847 -19.121 86.423 1 69.09 ? NB HEM 201 J 1 
HETATM 41 N NC HEM . . . V 4 27.465 -17.086 88.171 1 69.57 ? NC HEM 201 J 1 
HETATM 42 N ND HEM . . . V 4 28.42 -18.902 89.948 1 70.42 ? ND HEM 201 J 1 
HETATM 43 FE FE HEM . . . V 4 27.467 -19.027 88.271 1 69.78 ? FE HEM 201 J 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           43 
#