data_5X2W
#
_model_server_result.job_id            W1GDOFrayF0fwXkZsaretA 
_model_server_result.datetime_utc      '2024-11-02 15:30:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5x2w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    5X2W 
#
_exptl.entry_id    5X2W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              378.338 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2E)-2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-4-(methylsulfanyl)but-2-enoic acid' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5X2W 
_cell.length_a            154.635 
_cell.length_b            152.311 
_cell.length_c            80.487 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5X2W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C13 H19 N2 O7 P S' 
_chem_comp.formula_weight    378.338 
_chem_comp.id                3LM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2E)-2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-4-(methylsulfanyl)but-2-enoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O1 3LM doub 1 n n 
C CA 3LM sing 2 n n 
C O2 3LM sing 3 n n 
N CA 3LM sing 4 n n 
N C4A 3LM sing 5 n n 
P OP1 3LM doub 6 n n 
P OP2 3LM sing 7 n n 
P OP3 3LM sing 8 n n 
P OP4 3LM sing 9 n n 
N1 C2 3LM doub 10 n y 
N1 C6 3LM sing 11 n y 
C2 C3 3LM sing 12 n y 
C2 C2A 3LM sing 13 n n 
C3 O3 3LM sing 14 n n 
C3 C4 3LM doub 15 n y 
C4 C5 3LM sing 16 n y 
C4 C4A 3LM sing 17 n n 
C5 C6 3LM doub 18 n y 
C5 C5A 3LM sing 19 n n 
CA CB 3LM doub 20 n n 
CB CG 3LM sing 21 n n 
SD CE 3LM sing 22 n n 
SD CG 3LM sing 23 e n 
C5A OP4 3LM sing 24 n n 
N HN 3LM sing 25 n n 
O3 HO3 3LM sing 26 n n 
C6 H6 3LM sing 27 n n 
CB HB 3LM sing 28 n n 
CE HE 3LM sing 29 n n 
CE HEA 3LM sing 30 n n 
CE HEB 3LM sing 31 n n 
CG HG 3LM sing 32 n n 
CG HGA 3LM sing 33 n n 
C2A H2A 3LM sing 34 n n 
C2A H2A1 3LM sing 35 n n 
C2A H2A2 3LM sing 36 n n 
C4A H4A 3LM sing 37 n n 
C4A H4A1 3LM sing 38 n n 
C5A H5A 3LM sing 39 n n 
C5A H5A1 3LM sing 40 n n 
O2 H2 3LM sing 41 n n 
OP2 HOP2 3LM sing 42 n n 
OP3 HOP3 3LM sing 43 n n 
#
_atom_sites.entry_id                     5X2W 
_atom_sites.fract_transf_matrix[1][1]    0.006467 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006566 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012424 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 3LM A 1 401 401 3LM 3LM . 
F 2 3LM B 1 401 401 3LM 3LM . 
G 2 3LM C 1 401 401 3LM 3LM . 
H 2 3LM D 1 401 401 3LM 3LM . 
I 3 HOH A 1 501 39 HOH HOH . 
I 3 HOH A 2 502 34 HOH HOH . 
I 3 HOH A 3 503 7 HOH HOH . 
I 3 HOH A 4 504 27 HOH HOH . 
I 3 HOH A 5 505 24 HOH HOH . 
I 3 HOH A 6 506 58 HOH HOH . 
I 3 HOH A 7 507 32 HOH HOH . 
I 3 HOH A 8 508 46 HOH HOH . 
I 3 HOH A 9 509 37 HOH HOH . 
I 3 HOH A 10 510 21 HOH HOH . 
I 3 HOH A 11 511 8 HOH HOH . 
J 3 HOH B 1 501 11 HOH HOH . 
J 3 HOH B 2 502 26 HOH HOH . 
J 3 HOH B 3 503 52 HOH HOH . 
J 3 HOH B 4 504 13 HOH HOH . 
J 3 HOH B 5 505 10 HOH HOH . 
J 3 HOH B 6 506 4 HOH HOH . 
J 3 HOH B 7 507 43 HOH HOH . 
J 3 HOH B 8 508 49 HOH HOH . 
J 3 HOH B 9 509 14 HOH HOH . 
J 3 HOH B 10 510 54 HOH HOH . 
J 3 HOH B 11 511 1 HOH HOH . 
J 3 HOH B 12 512 41 HOH HOH . 
J 3 HOH B 13 513 9 HOH HOH . 
J 3 HOH B 14 514 22 HOH HOH . 
J 3 HOH B 15 515 45 HOH HOH . 
J 3 HOH B 16 516 57 HOH HOH . 
J 3 HOH B 17 517 19 HOH HOH . 
J 3 HOH B 18 518 47 HOH HOH . 
J 3 HOH B 19 519 40 HOH HOH . 
J 3 HOH B 20 520 59 HOH HOH . 
J 3 HOH B 21 521 48 HOH HOH . 
J 3 HOH B 22 522 3 HOH HOH . 
K 3 HOH C 1 501 38 HOH HOH . 
K 3 HOH C 2 502 50 HOH HOH . 
K 3 HOH C 3 503 6 HOH HOH . 
K 3 HOH C 4 504 20 HOH HOH . 
K 3 HOH C 5 505 31 HOH HOH . 
K 3 HOH C 6 506 18 HOH HOH . 
K 3 HOH C 7 507 55 HOH HOH . 
K 3 HOH C 8 508 25 HOH HOH . 
K 3 HOH C 9 509 56 HOH HOH . 
K 3 HOH C 10 510 33 HOH HOH . 
K 3 HOH C 11 511 61 HOH HOH . 
K 3 HOH C 12 512 30 HOH HOH . 
L 3 HOH D 1 501 17 HOH HOH . 
L 3 HOH D 2 502 42 HOH HOH . 
L 3 HOH D 3 503 2 HOH HOH . 
L 3 HOH D 4 504 12 HOH HOH . 
L 3 HOH D 5 505 5 HOH HOH . 
L 3 HOH D 6 506 16 HOH HOH . 
L 3 HOH D 7 507 28 HOH HOH . 
L 3 HOH D 8 508 23 HOH HOH . 
L 3 HOH D 9 509 36 HOH HOH . 
L 3 HOH D 10 510 51 HOH HOH . 
L 3 HOH D 11 511 15 HOH HOH . 
L 3 HOH D 12 512 63 HOH HOH . 
L 3 HOH D 13 513 29 HOH HOH . 
L 3 HOH D 14 514 53 HOH HOH . 
L 3 HOH D 15 515 44 HOH HOH . 
L 3 HOH D 16 516 62 HOH HOH . 
L 3 HOH D 17 517 64 HOH HOH . 
L 3 HOH D 18 518 60 HOH HOH . 
L 3 HOH D 19 519 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C 3LM . . . F 2 -10.954 29.764 -1.596 1 61.73 ? C 3LM 401 B 1 
HETATM 2 N N 3LM . . . F 2 -13.311 30.016 -2.13 1 50.24 ? N 3LM 401 B 1 
HETATM 3 O O1 3LM . . . F 2 -9.748 29.54 -1.849 1 63.86 ? O1 3LM 401 B 1 
HETATM 4 P P 3LM . . . F 2 -17.863 29.21 -5.21 1 25.9 ? P 3LM 401 B 1 
HETATM 5 N N1 3LM . . . F 2 -16.989 33.326 -1.076 1 32.7 ? N1 3LM 401 B 1 
HETATM 6 C C2 3LM . . . F 2 -15.987 32.809 -0.362 1 34.18 ? C2 3LM 401 B 1 
HETATM 7 C C3 3LM . . . F 2 -15.217 31.778 -0.907 1 36.16 ? C3 3LM 401 B 1 
HETATM 8 O O3 3LM . . . F 2 -14.198 31.278 -0.149 1 35.89 ? O3 3LM 401 B 1 
HETATM 9 C C4 3LM . . . F 2 -15.454 31.26 -2.202 1 37.7 ? C4 3LM 401 B 1 
HETATM 10 C C5 3LM . . . F 2 -16.518 31.834 -2.932 1 32.37 ? C5 3LM 401 B 1 
HETATM 11 C C6 3LM . . . F 2 -17.276 32.856 -2.358 1 32.08 ? C6 3LM 401 B 1 
HETATM 12 C CA 3LM . . . F 2 -12.059 29.76 -2.628 1 59.3 ? CA 3LM 401 B 1 
HETATM 13 C CB 3LM . . . F 2 -11.853 29.469 -3.996 1 62.18 ? CB 3LM 401 B 1 
HETATM 14 S SD 3LM . . . F 2 -10.35 28.935 -6.422 1 67.72 ? SD 3LM 401 B 1 
HETATM 15 C CE 3LM . . . F 2 -9.512 30.432 -6.909 1 66.96 ? CE 3LM 401 B 1 
HETATM 16 C CG 3LM . . . F 2 -10.466 29.217 -4.651 1 66.45 ? CG 3LM 401 B 1 
HETATM 17 C C2A 3LM . . . F 2 -15.731 33.379 1.029 1 34.93 ? C2A 3LM 401 B 1 
HETATM 18 C C4A 3LM . . . F 2 -14.618 30.131 -2.835 1 43.38 ? C4A 3LM 401 B 1 
HETATM 19 C C5A 3LM . . . F 2 -16.921 31.363 -4.347 1 30.36 ? C5A 3LM 401 B 1 
HETATM 20 O OP1 3LM . . . F 2 -18.355 29.808 -6.465 1 24.6 ? OP1 3LM 401 B 1 
HETATM 21 O OP2 3LM . . . F 2 -16.518 28.625 -5.427 1 26.61 ? OP2 3LM 401 B 1 
HETATM 22 O OP3 3LM . . . F 2 -18.803 28.167 -4.748 1 25.27 ? OP3 3LM 401 B 1 
HETATM 23 O OP4 3LM . . . F 2 -17.753 30.271 -4.054 1 27.35 ? OP4 3LM 401 B 1 
HETATM 24 O O2 3LM . . . F 2 -11.239 30.011 -0.405 1 62.24 ? O2 3LM 401 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           24 
#