data_5X3T
#
_model_server_result.job_id            1-i8ZcPeOMSJO5Ma2dw4rw 
_model_server_result.datetime_utc      '2025-08-31 07:34:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5x3t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":201}' 
#
_entry.id    5X3T 
#
_exptl.entry_id    5X3T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5X3T 
_cell.length_a            64.221 
_cell.length_b            64.221 
_cell.length_c            216.134 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5X3T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MSE 1 A MSE 1 1_555 A N ASP 2 A ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C GLY 49 A GLY 49 1_555 A N MSE 50 A MSE 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 A C MSE 50 A MSE 50 1_555 A N TYR 51 A TYR 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 B C MSE 1 C MSE 1 1_555 B N ASP 2 C ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 B C GLY 49 C GLY 49 1_555 B N MSE 50 C MSE 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale6 B C MSE 50 C MSE 50 1_555 B N TYR 51 C TYR 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 C C MSE 1 E MSE 1 1_555 C N ASP 2 E ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale8 C C GLY 49 E GLY 49 1_555 C N MSE 50 E MSE 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale9 C C MSE 50 E MSE 50 1_555 C N TYR 51 E TYR 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale10 D C MSE 1 G MSE 1 1_555 D N ASP 2 G ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale11 D C GLY 49 G GLY 49 1_555 D N MSE 50 G MSE 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale12 D C MSE 50 G MSE 50 1_555 D N TYR 51 G TYR 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale13 E C HIS 20 B HIS 0 1_555 E N MSE 21 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? 
covale ? covale14 E C MSE 21 B MSE 1 1_555 E N ILE 22 B ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? 
covale ? covale15 F C HIS 20 D HIS 0 1_555 F N MSE 21 D MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? 
covale ? covale16 F C MSE 21 D MSE 1 1_555 F N ILE 22 D ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale17 G C HIS 20 F HIS 0 1_555 G N MSE 21 F MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? 
covale ? covale18 G C MSE 21 F MSE 1 1_555 G N ILE 22 F ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? 
covale ? covale19 H C HIS 20 H HIS 0 1_555 H N MSE 21 H MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? 
covale ? covale20 H C MSE 21 H MSE 1 1_555 H N ILE 22 H ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? 
metalc ? metalc1 H OD1 ASP 117 H ASP 97 1_555 I MG MG . H MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5X3T 
_atom_sites.fract_transf_matrix[1][1]    0.015571 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015571 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004627 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 MG H 1 201 201 MG MG . 
J 4 HOH A 1 101 101 HOH HOH . 
J 4 HOH A 2 102 102 HOH HOH . 
J 4 HOH A 3 103 103 HOH HOH . 
K 4 HOH C 1 101 101 HOH HOH . 
K 4 HOH C 2 102 102 HOH HOH . 
K 4 HOH C 3 103 103 HOH HOH . 
K 4 HOH C 4 104 104 HOH HOH . 
K 4 HOH C 5 105 105 HOH HOH . 
K 4 HOH C 6 106 106 HOH HOH . 
L 4 HOH E 1 101 101 HOH HOH . 
L 4 HOH E 2 102 102 HOH HOH . 
L 4 HOH E 3 103 103 HOH HOH . 
L 4 HOH E 4 104 104 HOH HOH . 
M 4 HOH B 1 201 201 HOH HOH . 
M 4 HOH B 2 202 202 HOH HOH . 
M 4 HOH B 3 203 203 HOH HOH . 
M 4 HOH B 4 204 204 HOH HOH . 
M 4 HOH B 5 205 205 HOH HOH . 
M 4 HOH B 6 206 206 HOH HOH . 
M 4 HOH B 7 207 207 HOH HOH . 
M 4 HOH B 8 208 208 HOH HOH . 
M 4 HOH B 9 209 209 HOH HOH . 
M 4 HOH B 10 210 210 HOH HOH . 
M 4 HOH B 11 211 211 HOH HOH . 
M 4 HOH B 12 212 212 HOH HOH . 
M 4 HOH B 13 213 213 HOH HOH . 
M 4 HOH B 14 214 214 HOH HOH . 
M 4 HOH B 15 215 215 HOH HOH . 
M 4 HOH B 16 216 216 HOH HOH . 
M 4 HOH B 17 217 217 HOH HOH . 
N 4 HOH D 1 201 201 HOH HOH . 
N 4 HOH D 2 202 202 HOH HOH . 
N 4 HOH D 3 203 203 HOH HOH . 
N 4 HOH D 4 204 205 HOH HOH . 
N 4 HOH D 5 205 204 HOH HOH . 
N 4 HOH D 6 206 206 HOH HOH . 
N 4 HOH D 7 207 207 HOH HOH . 
N 4 HOH D 8 208 208 HOH HOH . 
N 4 HOH D 9 209 209 HOH HOH . 
O 4 HOH F 1 201 201 HOH HOH . 
O 4 HOH F 2 202 202 HOH HOH . 
O 4 HOH F 3 203 203 HOH HOH . 
O 4 HOH F 4 204 204 HOH HOH . 
O 4 HOH F 5 205 205 HOH HOH . 
O 4 HOH F 6 206 206 HOH HOH . 
O 4 HOH F 7 207 207 HOH HOH . 
O 4 HOH F 8 208 208 HOH HOH . 
O 4 HOH F 9 209 209 HOH HOH . 
O 4 HOH F 10 210 210 HOH HOH . 
O 4 HOH F 11 211 211 HOH HOH . 
O 4 HOH F 12 212 212 HOH HOH . 
P 4 HOH H 1 301 301 HOH HOH . 
P 4 HOH H 2 302 302 HOH HOH . 
P 4 HOH H 3 303 303 HOH HOH . 
P 4 HOH H 4 304 304 HOH HOH . 
P 4 HOH H 5 305 305 HOH HOH . 
P 4 HOH H 6 306 306 HOH HOH . 
P 4 HOH H 7 307 307 HOH HOH . 
P 4 HOH H 8 308 308 HOH HOH . 
P 4 HOH H 9 309 309 HOH HOH . 
P 4 HOH H 10 310 311 HOH HOH . 
P 4 HOH H 11 311 312 HOH HOH . 
P 4 HOH H 12 312 313 HOH HOH . 
P 4 HOH H 13 313 314 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         I 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               44.744 
_atom_site.Cartn_y               37.445 
_atom_site.Cartn_z               130.088 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        69.51 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          H 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           490 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#