data_5X4O # _model_server_result.job_id IwZeEzfY6uo7AVx1jUFM4A _model_server_result.datetime_utc '2024-11-27 03:15:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x4o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 5X4O # _exptl.entry_id 5X4O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.489 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-methyl-N-{3-[({2-[(2-oxo-2,3-dihydro-1H-indol-5-yl)amino]-5-(trifluoromethyl)pyrimidin-4-yl}amino)methyl]pyridin-2-yl}methanesulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5X4O _cell.length_a 66.439 _cell.length_b 66.439 _cell.length_c 152.797 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X4O _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H20 F3 N7 O3 S' _chem_comp.formula_weight 507.489 _chem_comp.id YAM _chem_comp.mon_nstd_flag . _chem_comp.name N-methyl-N-{3-[({2-[(2-oxo-2,3-dihydro-1H-indol-5-yl)amino]-5-(trifluoromethyl)pyrimidin-4-yl}amino)methyl]pyridin-2-yl}methanesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N30 C35 YAM sing 348 n n C35 H35 YAM sing 349 n n C35 H35A YAM sing 350 n n C35 H35B YAM sing 351 n n S31 C34 YAM sing 352 n n C34 H34 YAM sing 353 n n C34 H34A YAM sing 354 n n C34 H34B YAM sing 355 n n C3 N2 YAM doub 356 n y N2 C7 YAM sing 357 n y C7 C6 YAM doub 358 n y C7 H7 YAM sing 359 n n C5 C6 YAM sing 360 n y C6 C8 YAM sing 361 n n C17 C13 YAM doub 362 n y C13 C12 YAM sing 363 n n C13 C20 YAM sing 364 n y N1 C20 YAM doub 365 n y C20 N30 YAM sing 366 n n N25 C21 YAM sing 367 n n C22 C21 YAM doub 368 n y C21 C15 YAM sing 369 n y F28 C8 YAM sing 370 n n C8 F27 YAM sing 371 n n C8 F29 YAM sing 372 n n C18 C17 YAM sing 373 n y C18 C19 YAM doub 374 n y C18 H18 YAM sing 375 n n C15 C16 YAM doub 376 n y C11 C16 YAM sing 377 n y C16 H16 YAM sing 378 n n C19 N1 YAM sing 379 n y C19 H19 YAM sing 380 n n O33 S31 YAM doub 381 n n N30 S31 YAM sing 382 n n S31 O32 YAM doub 383 n n C17 H17 YAM sing 384 n n C12 N10 YAM sing 385 n n C12 H12 YAM sing 386 n n C12 H12A YAM sing 387 n n C5 N10 YAM sing 388 n n N10 HN10 YAM sing 389 n n N4 C5 YAM doub 390 n y N4 C3 YAM sing 391 n y N9 C3 YAM sing 392 n n C11 N9 YAM sing 393 n n N9 HN9 YAM sing 394 n n C14 C11 YAM doub 395 n y C22 C14 YAM sing 396 n y C14 H14 YAM sing 397 n n C23 C22 YAM sing 398 n n C24 C23 YAM sing 399 n n C23 H23 YAM sing 400 n n C23 H23A YAM sing 401 n n C15 H15 YAM sing 402 n n C24 N25 YAM sing 403 n n N25 HN25 YAM sing 404 n n O26 C24 YAM doub 405 n n # _atom_sites.entry_id 5X4O _atom_sites.fract_transf_matrix[1][1] 0.015051 _atom_sites.fract_transf_matrix[1][2] 0.00869 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01738 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006545 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YAM A 1 801 801 YAM LIG . C 3 HOH A 1 901 13 HOH HOH . C 3 HOH A 2 902 21 HOH HOH . C 3 HOH A 3 903 24 HOH HOH . C 3 HOH A 4 904 29 HOH HOH . C 3 HOH A 5 905 25 HOH HOH . C 3 HOH A 6 906 3 HOH HOH . C 3 HOH A 7 907 7 HOH HOH . C 3 HOH A 8 908 19 HOH HOH . C 3 HOH A 9 909 5 HOH HOH . C 3 HOH A 10 910 2 HOH HOH . C 3 HOH A 11 911 16 HOH HOH . C 3 HOH A 12 912 11 HOH HOH . C 3 HOH A 13 913 9 HOH HOH . C 3 HOH A 14 914 10 HOH HOH . C 3 HOH A 15 915 4 HOH HOH . C 3 HOH A 16 916 27 HOH HOH . C 3 HOH A 17 917 31 HOH HOH . C 3 HOH A 18 918 15 HOH HOH . C 3 HOH A 19 919 12 HOH HOH . C 3 HOH A 20 920 23 HOH HOH . C 3 HOH A 21 921 17 HOH HOH . C 3 HOH A 22 922 20 HOH HOH . C 3 HOH A 23 923 18 HOH HOH . C 3 HOH A 24 924 22 HOH HOH . C 3 HOH A 25 925 1 HOH HOH . C 3 HOH A 26 926 14 HOH HOH . C 3 HOH A 27 927 8 HOH HOH . C 3 HOH A 28 928 26 HOH HOH . C 3 HOH A 29 929 6 HOH HOH . C 3 HOH A 30 930 30 HOH HOH . C 3 HOH A 31 931 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C35 YAM . . . B 2 43.472 -6.212 -13.314 1 86.36 ? C35 YAM 801 A 1 HETATM 2 C C34 YAM . . . B 2 44.439 -6.711 -9.988 1 98.86 ? C34 YAM 801 A 1 HETATM 3 N N2 YAM . . . B 2 36.972 -8.708 -11.548 1 55.84 ? N2 YAM 801 A 1 HETATM 4 C C7 YAM . . . B 2 36.81 -8.434 -10.243 1 57.29 ? C7 YAM 801 A 1 HETATM 5 C C6 YAM . . . B 2 37.688 -7.678 -9.489 1 61.26 ? C6 YAM 801 A 1 HETATM 6 C C13 YAM . . . B 2 40.893 -4.866 -11.094 1 76.34 ? C13 YAM 801 A 1 HETATM 7 C C20 YAM . . . B 2 41.92 -4.695 -12.016 1 82 ? C20 YAM 801 A 1 HETATM 8 C C21 YAM . . . B 2 41.227 -6.848 -15.878 1 57.97 ? C21 YAM 801 A 1 HETATM 9 C C8 YAM . . . B 2 37.433 -7.393 -8.034 1 64.29 ? C8 YAM 801 A 1 HETATM 10 C C18 YAM . . . B 2 39.837 -2.959 -12.027 1 78.75 ? C18 YAM 801 A 1 HETATM 11 C C16 YAM . . . B 2 39.56 -6.554 -14.236 1 57.92 ? C16 YAM 801 A 1 HETATM 12 C C19 YAM . . . B 2 40.897 -2.867 -12.906 1 77.93 ? C19 YAM 801 A 1 HETATM 13 O O33 YAM . . . B 2 45.564 -5.076 -11.657 1 100.76 ? O33 YAM 801 A 1 HETATM 14 S S31 YAM . . . B 2 44.317 -5.2 -10.927 1 98.84 ? S31 YAM 801 A 1 HETATM 15 O O32 YAM . . . B 2 43.859 -4.144 -10.038 1 99.16 ? O32 YAM 801 A 1 HETATM 16 N N30 YAM . . . B 2 43.044 -5.633 -12.009 1 88.86 ? N30 YAM 801 A 1 HETATM 17 C C17 YAM . . . B 2 39.834 -3.979 -11.1 1 76.22 ? C17 YAM 801 A 1 HETATM 18 N N1 YAM . . . B 2 41.942 -3.707 -12.926 1 78.54 ? N1 YAM 801 A 1 HETATM 19 C C12 YAM . . . B 2 40.97 -5.988 -10.115 1 71.6 ? C12 YAM 801 A 1 HETATM 20 N N10 YAM . . . B 2 39.758 -6.418 -9.45 1 66.66 ? N10 YAM 801 A 1 HETATM 21 C C5 YAM . . . B 2 38.807 -7.199 -10.15 1 62.55 ? C5 YAM 801 A 1 HETATM 22 F F29 YAM . . . B 2 36.253 -7.853 -7.542 1 62.18 ? F29 YAM 801 A 1 HETATM 23 F F28 YAM . . . B 2 38.448 -7.681 -7.188 1 69.28 ? F28 YAM 801 A 1 HETATM 24 F F27 YAM . . . B 2 37.289 -6.054 -7.837 1 64.19 ? F27 YAM 801 A 1 HETATM 25 N N4 YAM . . . B 2 38.984 -7.456 -11.457 1 58.3 ? N4 YAM 801 A 1 HETATM 26 C C3 YAM . . . B 2 38.065 -8.181 -12.121 1 57.6 ? C3 YAM 801 A 1 HETATM 27 N N9 YAM . . . B 2 38.248 -8.411 -13.496 1 55.71 ? N9 YAM 801 A 1 HETATM 28 C C11 YAM . . . B 2 39.259 -7.907 -14.313 1 55.81 ? C11 YAM 801 A 1 HETATM 29 C C14 YAM . . . B 2 39.945 -8.731 -15.187 1 54.79 ? C14 YAM 801 A 1 HETATM 30 C C22 YAM . . . B 2 40.936 -8.182 -15.969 1 56.88 ? C22 YAM 801 A 1 HETATM 31 C C23 YAM . . . B 2 41.824 -8.825 -16.987 1 56.25 ? C23 YAM 801 A 1 HETATM 32 C C15 YAM . . . B 2 40.556 -6.01 -15.02 1 59.43 ? C15 YAM 801 A 1 HETATM 33 N N25 YAM . . . B 2 42.245 -6.533 -16.76 1 57.65 ? N25 YAM 801 A 1 HETATM 34 C C24 YAM . . . B 2 42.715 -7.666 -17.394 1 57.97 ? C24 YAM 801 A 1 HETATM 35 O O26 YAM . . . B 2 43.685 -7.746 -18.133 1 59.32 ? O26 YAM 801 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 35 #