data_5X4Q # _model_server_result.job_id WTutgD0TJdwOlA5clkjtLA _model_server_result.datetime_utc '2025-01-07 04:26:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x4q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 5X4Q # _exptl.entry_id 5X4Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 366.804 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[[5-chloranyl-2-(pyridin-3-ylmethylamino)pyrimidin-4-yl]amino]-1,3-dihydroindol-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5X4Q _cell.length_a 66.874 _cell.length_b 66.874 _cell.length_c 153.781 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X4Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 51 A SER 39 1_555 D K K . A K 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.055 ? metalc ? metalc2 A OG SER 51 A SER 39 1_555 D K K . A K 803 12_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc3 A O PRO 88 A PRO 76 1_555 D K K . A K 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.139 ? metalc ? metalc4 A O PRO 88 A PRO 76 1_555 D K K . A K 803 12_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc5 A O GLU 89 A GLU 77 1_555 D K K . A K 803 12_545 ? ? ? ? ? ? ? ? ? ? ? ? 3.453 ? metalc ? metalc6 A O ILE 90 A ILE 78 1_555 D K K . A K 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.375 ? metalc ? metalc7 A O ILE 90 A ILE 78 1_555 D K K . A K 803 12_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.984 ? # _chem_comp.formula 'C18 H15 Cl N6 O' _chem_comp.formula_weight 366.804 _chem_comp.id 7Z6 _chem_comp.mon_nstd_flag . _chem_comp.name 5-[[5-chloranyl-2-(pyridin-3-ylmethylamino)pyrimidin-4-yl]amino]-1,3-dihydroindol-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O25 C16 7Z6 doub 1 n n C16 C17 7Z6 sing 2 n n C16 N22 7Z6 sing 3 n n C17 C9 7Z6 sing 4 n n N22 C11 7Z6 sing 5 n n C9 C11 7Z6 sing 6 n y C9 C5 7Z6 doub 7 n y C11 C3 7Z6 doub 8 n y C5 C12 7Z6 sing 9 n y C3 C4 7Z6 sing 10 n y C12 C4 7Z6 doub 11 n y C12 N23 7Z6 sing 12 n n N23 C14 7Z6 sing 13 n n N19 C6 7Z6 doub 14 n y N19 C7 7Z6 sing 15 n y C6 C1 7Z6 sing 16 n y C14 N21 7Z6 doub 17 n y C14 C13 7Z6 sing 18 n y C7 C10 7Z6 doub 19 n y CL1 C13 7Z6 sing 20 n n N21 C15 7Z6 sing 21 n y C13 C8 7Z6 doub 22 n y C1 C2 7Z6 doub 23 n y C10 C2 7Z6 sing 24 n y C10 C18 7Z6 sing 25 n n C18 N24 7Z6 sing 26 n n C15 N24 7Z6 sing 27 n n C15 N20 7Z6 doub 28 n y C8 N20 7Z6 sing 29 n y C4 H1 7Z6 sing 30 n n C5 H2 7Z6 sing 31 n n C6 H3 7Z6 sing 32 n n C7 H4 7Z6 sing 33 n n C8 H5 7Z6 sing 34 n n C17 H6 7Z6 sing 35 n n C17 H7 7Z6 sing 36 n n C1 H8 7Z6 sing 37 n n C2 H9 7Z6 sing 38 n n C3 H10 7Z6 sing 39 n n C18 H11 7Z6 sing 40 n n C18 H12 7Z6 sing 41 n n N22 H13 7Z6 sing 42 n n N23 H14 7Z6 sing 43 n n N24 H15 7Z6 sing 44 n n # _atom_sites.entry_id 5X4Q _atom_sites.fract_transf_matrix[1][1] 0.014953 _atom_sites.fract_transf_matrix[1][2] 0.008633 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017267 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006503 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7Z6 A 1 801 801 7Z6 LIG . C 3 EDO A 1 802 802 EDO EDO . D 4 K A 1 803 803 K K . E 5 HOH A 1 901 7 HOH HOH . E 5 HOH A 2 902 25 HOH HOH . E 5 HOH A 3 903 15 HOH HOH . E 5 HOH A 4 904 1 HOH HOH . E 5 HOH A 5 905 14 HOH HOH . E 5 HOH A 6 906 29 HOH HOH . E 5 HOH A 7 907 17 HOH HOH . E 5 HOH A 8 908 23 HOH HOH . E 5 HOH A 9 909 11 HOH HOH . E 5 HOH A 10 910 12 HOH HOH . E 5 HOH A 11 911 5 HOH HOH . E 5 HOH A 12 912 9 HOH HOH . E 5 HOH A 13 913 6 HOH HOH . E 5 HOH A 14 914 24 HOH HOH . E 5 HOH A 15 915 13 HOH HOH . E 5 HOH A 16 916 22 HOH HOH . E 5 HOH A 17 917 3 HOH HOH . E 5 HOH A 18 918 18 HOH HOH . E 5 HOH A 19 919 19 HOH HOH . E 5 HOH A 20 920 4 HOH HOH . E 5 HOH A 21 921 16 HOH HOH . E 5 HOH A 22 922 26 HOH HOH . E 5 HOH A 23 923 21 HOH HOH . E 5 HOH A 24 924 28 HOH HOH . E 5 HOH A 25 925 10 HOH HOH . E 5 HOH A 26 926 20 HOH HOH . E 5 HOH A 27 927 2 HOH HOH . E 5 HOH A 28 928 8 HOH HOH . E 5 HOH A 29 929 27 HOH HOH . E 5 HOH A 30 930 30 HOH HOH . E 5 HOH A 31 931 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 7Z6 . . . B 2 39.875 -6.875 -14.345 1 55.58 ? C4 7Z6 801 A 1 HETATM 2 C C5 7Z6 . . . B 2 40.159 -9.074 -15.283 1 53.85 ? C5 7Z6 801 A 1 HETATM 3 C C6 7Z6 . . . B 2 41.311 -3.164 -12.19 1 82.32 ? C6 7Z6 801 A 1 HETATM 4 C C7 7Z6 . . . B 2 42.402 -5.142 -12.066 1 79.49 ? C7 7Z6 801 A 1 HETATM 5 C C8 7Z6 . . . B 2 37.655 -9.007 -9.979 1 58.71 ? C8 7Z6 801 A 1 HETATM 6 C C10 7Z6 . . . B 2 41.663 -5.546 -10.974 1 77.19 ? C10 7Z6 801 A 1 HETATM 7 C C13 7Z6 . . . B 2 37.541 -9.113 -11.353 1 58.28 ? C13 7Z6 801 A 1 HETATM 8 C C15 7Z6 . . . B 2 39.692 -7.984 -10.217 1 62.43 ? C15 7Z6 801 A 1 HETATM 9 C C17 7Z6 . . . B 2 41.994 -9.239 -17.122 1 56.05 ? C17 7Z6 801 A 1 HETATM 10 C C1 7Z6 . . . B 2 40.519 -3.469 -11.102 1 81.67 ? C1 7Z6 801 A 1 HETATM 11 C C2 7Z6 . . . B 2 40.698 -4.687 -10.479 1 79.96 ? C2 7Z6 801 A 1 HETATM 12 C C3 7Z6 . . . B 2 40.869 -6.371 -15.154 1 56.96 ? C3 7Z6 801 A 1 HETATM 13 C C9 7Z6 . . . B 2 41.147 -8.565 -16.094 1 55 ? C9 7Z6 801 A 1 HETATM 14 C C11 7Z6 . . . B 2 41.485 -7.243 -16.019 1 56.3 ? C11 7Z6 801 A 1 HETATM 15 C C12 7Z6 . . . B 2 39.517 -8.213 -14.405 1 54.85 ? C12 7Z6 801 A 1 HETATM 16 C C14 7Z6 . . . B 2 38.571 -8.614 -12.134 1 57.05 ? C14 7Z6 801 A 1 HETATM 17 C C16 7Z6 . . . B 2 42.884 -8.115 -17.609 1 55.91 ? C16 7Z6 801 A 1 HETATM 18 C C18 7Z6 . . . B 2 41.941 -6.886 -10.377 1 73.38 ? C18 7Z6 801 A 1 HETATM 19 N N19 7Z6 . . . B 2 42.255 -3.969 -12.697 1 80.99 ? N19 7Z6 801 A 1 HETATM 20 N N20 7Z6 . . . B 2 38.722 -8.44 -9.397 1 60.23 ? N20 7Z6 801 A 1 HETATM 21 N N21 7Z6 . . . B 2 39.646 -8.052 -11.56 1 58.88 ? N21 7Z6 801 A 1 HETATM 22 N N22 7Z6 . . . B 2 42.5 -6.976 -16.928 1 56.61 ? N22 7Z6 801 A 1 HETATM 23 N N23 7Z6 . . . B 2 38.512 -8.683 -13.54 1 56.32 ? N23 7Z6 801 A 1 HETATM 24 N N24 7Z6 . . . B 2 40.818 -7.402 -9.605 1 66.75 ? N24 7Z6 801 A 1 HETATM 25 O O25 7Z6 . . . B 2 43.777 -8.213 -18.441 1 58.19 ? O25 7Z6 801 A 1 HETATM 26 CL CL1 7Z6 . . . B 2 36.135 -9.842 -12.044 1 57.22 ? CL1 7Z6 801 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 124 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 383 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 26 #