data_5X4S # _model_server_result.job_id gf2DdYA8Wlmn9JPOK0kJeA _model_server_result.datetime_utc '2024-11-16 23:24:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x4s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 5X4S # _exptl.entry_id 5X4S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5X4S _cell.length_a 73.291 _cell.length_b 73.291 _cell.length_c 240.263 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X4S _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 602 NAG 2 n B NAG 2 B 2 NAG A 603 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 19 1_555 A SG CYS 120 A CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 115 A CYS 128 1_555 A SG CYS 146 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 265 A CYS 278 1_555 A SG CYS 275 A CYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 96 A ASN 109 1_555 C C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale2 A ND2 ASN 106 A ASN 119 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5X4S _atom_sites.fract_transf_matrix[1][1] 0.013644 _atom_sites.fract_transf_matrix[1][2] 0.007878 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015755 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004162 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 601 601 NAG NAG . D 4 HOH A 1 701 76 HOH HOH . D 4 HOH A 2 702 83 HOH HOH . D 4 HOH A 3 703 19 HOH HOH . D 4 HOH A 4 704 36 HOH HOH . D 4 HOH A 5 705 49 HOH HOH . D 4 HOH A 6 706 10 HOH HOH . D 4 HOH A 7 707 58 HOH HOH . D 4 HOH A 8 708 72 HOH HOH . D 4 HOH A 9 709 43 HOH HOH . D 4 HOH A 10 710 11 HOH HOH . D 4 HOH A 11 711 15 HOH HOH . D 4 HOH A 12 712 12 HOH HOH . D 4 HOH A 13 713 78 HOH HOH . D 4 HOH A 14 714 41 HOH HOH . D 4 HOH A 15 715 27 HOH HOH . D 4 HOH A 16 716 66 HOH HOH . D 4 HOH A 17 717 8 HOH HOH . D 4 HOH A 18 718 68 HOH HOH . D 4 HOH A 19 719 50 HOH HOH . D 4 HOH A 20 720 6 HOH HOH . D 4 HOH A 21 721 25 HOH HOH . D 4 HOH A 22 722 4 HOH HOH . D 4 HOH A 23 723 1 HOH HOH . D 4 HOH A 24 724 40 HOH HOH . D 4 HOH A 25 725 7 HOH HOH . D 4 HOH A 26 726 23 HOH HOH . D 4 HOH A 27 727 13 HOH HOH . D 4 HOH A 28 728 16 HOH HOH . D 4 HOH A 29 729 14 HOH HOH . D 4 HOH A 30 730 21 HOH HOH . D 4 HOH A 31 731 3 HOH HOH . D 4 HOH A 32 732 5 HOH HOH . D 4 HOH A 33 733 18 HOH HOH . D 4 HOH A 34 734 22 HOH HOH . D 4 HOH A 35 735 30 HOH HOH . D 4 HOH A 36 736 77 HOH HOH . D 4 HOH A 37 737 44 HOH HOH . D 4 HOH A 38 738 55 HOH HOH . D 4 HOH A 39 739 45 HOH HOH . D 4 HOH A 40 740 32 HOH HOH . D 4 HOH A 41 741 17 HOH HOH . D 4 HOH A 42 742 31 HOH HOH . D 4 HOH A 43 743 60 HOH HOH . D 4 HOH A 44 744 42 HOH HOH . D 4 HOH A 45 745 46 HOH HOH . D 4 HOH A 46 746 71 HOH HOH . D 4 HOH A 47 747 33 HOH HOH . D 4 HOH A 48 748 29 HOH HOH . D 4 HOH A 49 749 26 HOH HOH . D 4 HOH A 50 750 56 HOH HOH . D 4 HOH A 51 751 2 HOH HOH . D 4 HOH A 52 752 54 HOH HOH . D 4 HOH A 53 753 9 HOH HOH . D 4 HOH A 54 754 35 HOH HOH . D 4 HOH A 55 755 64 HOH HOH . D 4 HOH A 56 756 48 HOH HOH . D 4 HOH A 57 757 59 HOH HOH . D 4 HOH A 58 758 24 HOH HOH . D 4 HOH A 59 759 37 HOH HOH . D 4 HOH A 60 760 39 HOH HOH . D 4 HOH A 61 761 20 HOH HOH . D 4 HOH A 62 762 53 HOH HOH . D 4 HOH A 63 763 84 HOH HOH . D 4 HOH A 64 764 82 HOH HOH . D 4 HOH A 65 765 80 HOH HOH . D 4 HOH A 66 766 69 HOH HOH . D 4 HOH A 67 767 62 HOH HOH . D 4 HOH A 68 768 67 HOH HOH . D 4 HOH A 69 769 47 HOH HOH . D 4 HOH A 70 770 75 HOH HOH . D 4 HOH A 71 771 73 HOH HOH . D 4 HOH A 72 772 34 HOH HOH . D 4 HOH A 73 773 63 HOH HOH . D 4 HOH A 74 774 51 HOH HOH . D 4 HOH A 75 775 70 HOH HOH . D 4 HOH A 76 776 52 HOH HOH . D 4 HOH A 77 777 81 HOH HOH . D 4 HOH A 78 778 65 HOH HOH . D 4 HOH A 79 779 61 HOH HOH . D 4 HOH A 80 780 28 HOH HOH . D 4 HOH A 81 781 74 HOH HOH . D 4 HOH A 82 782 57 HOH HOH . D 4 HOH A 83 783 79 HOH HOH . D 4 HOH A 84 784 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 -5.44 -11.584 -1.926 1 69.81 ? C1 NAG 601 A 1 HETATM 2 C C2 NAG . . . C 3 -5.57 -11.515 -3.454 1 76.18 ? C2 NAG 601 A 1 HETATM 3 C C3 NAG . . . C 3 -6.007 -10.105 -3.87 1 85.28 ? C3 NAG 601 A 1 HETATM 4 C C4 NAG . . . C 3 -7.243 -9.664 -3.093 1 84.94 ? C4 NAG 601 A 1 HETATM 5 C C5 NAG . . . C 3 -7.042 -9.861 -1.593 1 85.77 ? C5 NAG 601 A 1 HETATM 6 C C6 NAG . . . C 3 -8.285 -9.575 -0.782 1 89.14 ? C6 NAG 601 A 1 HETATM 7 C C7 NAG . . . C 3 -4.197 -12.065 -5.425 1 89.63 ? C7 NAG 601 A 1 HETATM 8 C C8 NAG . . . C 3 -2.826 -12.425 -5.913 1 87.01 ? C8 NAG 601 A 1 HETATM 9 N N2 NAG . . . C 3 -4.318 -11.874 -4.104 1 81.11 ? N2 NAG 601 A 1 HETATM 10 O O3 NAG . . . C 3 -6.279 -10.062 -5.266 1 89.54 ? O3 NAG 601 A 1 HETATM 11 O O4 NAG . . . C 3 -7.504 -8.288 -3.344 1 88.45 ? O4 NAG 601 A 1 HETATM 12 O O5 NAG . . . C 3 -6.68 -11.222 -1.326 1 80.46 ? O5 NAG 601 A 1 HETATM 13 O O6 NAG . . . C 3 -8.237 -10.224 0.481 1 88.39 ? O6 NAG 601 A 1 HETATM 14 O O7 NAG . . . C 3 -5.149 -11.949 -6.192 1 94.36 ? O7 NAG 601 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #