data_5X4W # _model_server_result.job_id XC6sQy5ZVJ8GJVfVLfnQiQ _model_server_result.datetime_utc '2024-11-23 16:29:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x4w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5X4W # _exptl.entry_id 5X4W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5X4W _cell.length_a 95.59 _cell.length_b 95.59 _cell.length_c 79.671 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X4W _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -53.114 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 5X4W _atom_sites.fract_transf_matrix[1][1] 0.010461 _atom_sites.fract_transf_matrix[1][2] 0.00604 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01208 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012552 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 401 1 PO4 PO4 . C 2 PO4 A 1 402 2 PO4 PO4 . D 3 HOH A 1 501 237 HOH HOH . D 3 HOH A 2 502 247 HOH HOH . D 3 HOH A 3 503 249 HOH HOH . D 3 HOH A 4 504 246 HOH HOH . D 3 HOH A 5 505 34 HOH HOH . D 3 HOH A 6 506 65 HOH HOH . D 3 HOH A 7 507 58 HOH HOH . D 3 HOH A 8 508 83 HOH HOH . D 3 HOH A 9 509 33 HOH HOH . D 3 HOH A 10 510 55 HOH HOH . D 3 HOH A 11 511 119 HOH HOH . D 3 HOH A 12 512 248 HOH HOH . D 3 HOH A 13 513 94 HOH HOH . D 3 HOH A 14 514 17 HOH HOH . D 3 HOH A 15 515 228 HOH HOH . D 3 HOH A 16 516 1 HOH HOH . D 3 HOH A 17 517 90 HOH HOH . D 3 HOH A 18 518 220 HOH HOH . D 3 HOH A 19 519 70 HOH HOH . D 3 HOH A 20 520 239 HOH HOH . D 3 HOH A 21 521 7 HOH HOH . D 3 HOH A 22 522 12 HOH HOH . D 3 HOH A 23 523 9 HOH HOH . D 3 HOH A 24 524 217 HOH HOH . D 3 HOH A 25 525 219 HOH HOH . D 3 HOH A 26 526 98 HOH HOH . D 3 HOH A 27 527 238 HOH HOH . D 3 HOH A 28 528 36 HOH HOH . D 3 HOH A 29 529 11 HOH HOH . D 3 HOH A 30 530 153 HOH HOH . D 3 HOH A 31 531 66 HOH HOH . D 3 HOH A 32 532 32 HOH HOH . D 3 HOH A 33 533 50 HOH HOH . D 3 HOH A 34 534 6 HOH HOH . D 3 HOH A 35 535 235 HOH HOH . D 3 HOH A 36 536 16 HOH HOH . D 3 HOH A 37 537 2 HOH HOH . D 3 HOH A 38 538 221 HOH HOH . D 3 HOH A 39 539 250 HOH HOH . D 3 HOH A 40 540 44 HOH HOH . D 3 HOH A 41 541 103 HOH HOH . D 3 HOH A 42 542 18 HOH HOH . D 3 HOH A 43 543 35 HOH HOH . D 3 HOH A 44 544 4 HOH HOH . D 3 HOH A 45 545 227 HOH HOH . D 3 HOH A 46 546 244 HOH HOH . D 3 HOH A 47 547 25 HOH HOH . D 3 HOH A 48 548 233 HOH HOH . D 3 HOH A 49 549 49 HOH HOH . D 3 HOH A 50 550 14 HOH HOH . D 3 HOH A 51 551 29 HOH HOH . D 3 HOH A 52 552 79 HOH HOH . D 3 HOH A 53 553 136 HOH HOH . D 3 HOH A 54 554 20 HOH HOH . D 3 HOH A 55 555 10 HOH HOH . D 3 HOH A 56 556 26 HOH HOH . D 3 HOH A 57 557 232 HOH HOH . D 3 HOH A 58 558 60 HOH HOH . D 3 HOH A 59 559 120 HOH HOH . D 3 HOH A 60 560 212 HOH HOH . D 3 HOH A 61 561 43 HOH HOH . D 3 HOH A 62 562 73 HOH HOH . D 3 HOH A 63 563 97 HOH HOH . D 3 HOH A 64 564 231 HOH HOH . D 3 HOH A 65 565 242 HOH HOH . D 3 HOH A 66 566 53 HOH HOH . D 3 HOH A 67 567 222 HOH HOH . D 3 HOH A 68 568 125 HOH HOH . D 3 HOH A 69 569 216 HOH HOH . D 3 HOH A 70 570 89 HOH HOH . D 3 HOH A 71 571 5 HOH HOH . D 3 HOH A 72 572 215 HOH HOH . D 3 HOH A 73 573 21 HOH HOH . D 3 HOH A 74 574 30 HOH HOH . D 3 HOH A 75 575 3 HOH HOH . D 3 HOH A 76 576 15 HOH HOH . D 3 HOH A 77 577 42 HOH HOH . D 3 HOH A 78 578 23 HOH HOH . D 3 HOH A 79 579 111 HOH HOH . D 3 HOH A 80 580 39 HOH HOH . D 3 HOH A 81 581 74 HOH HOH . D 3 HOH A 82 582 77 HOH HOH . D 3 HOH A 83 583 47 HOH HOH . D 3 HOH A 84 584 28 HOH HOH . D 3 HOH A 85 585 84 HOH HOH . D 3 HOH A 86 586 61 HOH HOH . D 3 HOH A 87 587 41 HOH HOH . D 3 HOH A 88 588 62 HOH HOH . D 3 HOH A 89 589 37 HOH HOH . D 3 HOH A 90 590 236 HOH HOH . D 3 HOH A 91 591 46 HOH HOH . D 3 HOH A 92 592 223 HOH HOH . D 3 HOH A 93 593 243 HOH HOH . D 3 HOH A 94 594 69 HOH HOH . D 3 HOH A 95 595 63 HOH HOH . D 3 HOH A 96 596 27 HOH HOH . D 3 HOH A 97 597 240 HOH HOH . D 3 HOH A 98 598 214 HOH HOH . D 3 HOH A 99 599 72 HOH HOH . D 3 HOH A 100 600 38 HOH HOH . D 3 HOH A 101 601 245 HOH HOH . D 3 HOH A 102 602 112 HOH HOH . D 3 HOH A 103 603 22 HOH HOH . D 3 HOH A 104 604 31 HOH HOH . D 3 HOH A 105 605 76 HOH HOH . D 3 HOH A 106 606 52 HOH HOH . D 3 HOH A 107 607 142 HOH HOH . D 3 HOH A 108 608 113 HOH HOH . D 3 HOH A 109 609 40 HOH HOH . D 3 HOH A 110 610 202 HOH HOH . D 3 HOH A 111 611 24 HOH HOH . D 3 HOH A 112 612 80 HOH HOH . D 3 HOH A 113 613 114 HOH HOH . D 3 HOH A 114 614 85 HOH HOH . D 3 HOH A 115 615 152 HOH HOH . D 3 HOH A 116 616 241 HOH HOH . D 3 HOH A 117 617 93 HOH HOH . D 3 HOH A 118 618 224 HOH HOH . D 3 HOH A 119 619 203 HOH HOH . D 3 HOH A 120 620 234 HOH HOH . D 3 HOH A 121 621 154 HOH HOH . D 3 HOH A 122 622 75 HOH HOH . D 3 HOH A 123 623 96 HOH HOH . D 3 HOH A 124 624 229 HOH HOH . D 3 HOH A 125 625 218 HOH HOH . D 3 HOH A 126 626 122 HOH HOH . D 3 HOH A 127 627 206 HOH HOH . D 3 HOH A 128 628 92 HOH HOH . D 3 HOH A 129 629 116 HOH HOH . D 3 HOH A 130 630 57 HOH HOH . D 3 HOH A 131 631 140 HOH HOH . D 3 HOH A 132 632 213 HOH HOH . D 3 HOH A 133 633 226 HOH HOH . D 3 HOH A 134 634 225 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . B 2 -34.035 31.621 -28.429 1 31.21 ? P PO4 401 A 1 HETATM 2 O O1 PO4 . . . B 2 -33.752 30.806 -29.669 1 39.61 ? O1 PO4 401 A 1 HETATM 3 O O2 PO4 . . . B 2 -35.507 31.949 -28.368 1 37.14 ? O2 PO4 401 A 1 HETATM 4 O O3 PO4 . . . B 2 -33.235 32.9 -28.475 1 32.28 ? O3 PO4 401 A 1 HETATM 5 O O4 PO4 . . . B 2 -33.644 30.827 -27.206 1 39.57 ? O4 PO4 401 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #