data_5X5Q
#
_model_server_result.job_id            K1PFxo9NKXHGxK-516zo5w 
_model_server_result.datetime_utc      '2024-11-16 19:43:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5x5q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":402}' 
#
_entry.id    5X5Q 
#
_exptl.entry_id    5X5Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              458.488 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TOMUDEX 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5X5Q 
_cell.length_a            107.835 
_cell.length_b            107.835 
_cell.length_c            314.951 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5X5Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,G,H,M,N,S,V 1 1 
B,E,I,J,O,P,T 2 1 
C,F,K,L,Q,R,U,W 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 R N N 
#
_chem_comp.formula           'C21 H22 N4 O6 S' 
_chem_comp.formula_weight    458.488 
_chem_comp.id                D16 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              TOMUDEX 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ZD1694;Raltitrexed 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 D16 sing 83 n n 
N1 C8A D16 sing 84 n n 
N1 HN1 D16 sing 85 n n 
C2 CM2 D16 sing 86 n n 
C2 N3 D16 doub 87 n n 
CM2 HM21 D16 sing 88 n n 
CM2 HM22 D16 sing 89 n n 
CM2 HM23 D16 sing 90 n n 
N3 C4 D16 sing 91 n n 
C4 O4 D16 doub 92 n n 
C4 C4A D16 sing 93 n n 
C4A C5 D16 doub 94 n y 
C4A C8A D16 sing 95 n y 
C5 C6 D16 sing 96 n y 
C5 H5 D16 sing 97 n n 
C6 C7 D16 doub 98 n y 
C6 C9 D16 sing 99 n n 
C7 C8 D16 sing 100 n y 
C7 H7 D16 sing 101 n n 
C8 C8A D16 doub 102 n y 
C8 H8 D16 sing 103 n n 
C9 N10 D16 sing 104 n n 
C9 H91 D16 sing 105 n n 
C9 H92 D16 sing 106 n n 
N10 C14 D16 sing 107 n n 
N10 CP1 D16 sing 108 n n 
C11 S13 D16 sing 109 n y 
C11 C16 D16 doub 110 n y 
C11 C D16 sing 111 n n 
S13 C14 D16 sing 112 n y 
C14 C15 D16 doub 113 n y 
C15 C16 D16 sing 114 n y 
C15 H15 D16 sing 115 n n 
C16 H16 D16 sing 116 n n 
C O D16 doub 117 n n 
C N D16 sing 118 n n 
N CA D16 sing 119 n n 
N HN D16 sing 120 n n 
CA CB D16 sing 121 n n 
CA CT D16 sing 122 n n 
CA HA D16 sing 123 n n 
CB CG D16 sing 124 n n 
CB HB1 D16 sing 125 n n 
CB HB2 D16 sing 126 n n 
CG CD D16 sing 127 n n 
CG HG1 D16 sing 128 n n 
CG HG2 D16 sing 129 n n 
CD OE1 D16 doub 130 n n 
CD OE2 D16 sing 131 n n 
OE2 HOE2 D16 sing 132 n n 
CT O1 D16 doub 133 n n 
CT O2 D16 sing 134 n n 
O2 HO2 D16 sing 135 n n 
CP1 HP11 D16 sing 136 n n 
CP1 HP12 D16 sing 137 n n 
CP1 HP13 D16 sing 138 n n 
#
_atom_sites.entry_id                     5X5Q 
_atom_sites.fract_transf_matrix[1][1]    0.009273 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009273 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003175 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 UMP A 1 401 1 UMP UMP . 
H 3 D16 A 1 402 1 D16 RTX . 
I 2 UMP B 1 401 2 UMP UMP . 
J 3 D16 B 1 402 2 D16 RTX . 
K 2 UMP C 1 401 3 UMP UMP . 
L 3 D16 C 1 402 3 D16 RTX . 
M 2 UMP D 1 401 4 UMP UMP . 
N 3 D16 D 1 402 4 D16 RTX . 
O 2 UMP E 1 401 5 UMP UMP . 
P 3 D16 E 1 402 5 D16 RTX . 
Q 2 UMP F 1 401 6 UMP UMP . 
R 3 D16 F 1 402 6 D16 RTX . 
S 4 HOH A 1 501 1 HOH HOH . 
S 4 HOH A 2 502 9 HOH HOH . 
T 4 HOH B 1 501 5 HOH HOH . 
T 4 HOH B 2 502 8 HOH HOH . 
T 4 HOH B 3 503 2 HOH HOH . 
T 4 HOH B 4 504 4 HOH HOH . 
U 4 HOH C 1 501 3 HOH HOH . 
V 4 HOH D 1 501 7 HOH HOH . 
V 4 HOH D 2 502 10 HOH HOH . 
W 4 HOH F 1 501 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 D16 . . . L 3 43.793 69.113 47.633 1 64.44 ? N1 D16 402 C 1 
HETATM 2 C C2 D16 . . . L 3 45.04 69.525 48.232 1 66.77 ? C2 D16 402 C 1 
HETATM 3 C CM2 D16 . . . L 3 46.17 70.139 47.44 1 66.88 ? CM2 D16 402 C 1 
HETATM 4 N N3 D16 . . . L 3 45.229 69.351 49.637 1 66.5 ? N3 D16 402 C 1 
HETATM 5 C C4 D16 . . . L 3 44.252 68.785 50.46 1 69.34 ? C4 D16 402 C 1 
HETATM 6 O O4 D16 . . . L 3 44.416 68.631 51.642 1 73.15 ? O4 D16 402 C 1 
HETATM 7 C C4A D16 . . . L 3 42.966 68.358 49.879 1 68.27 ? C4A D16 402 C 1 
HETATM 8 C C5 D16 . . . L 3 41.992 67.795 50.735 1 62.18 ? C5 D16 402 C 1 
HETATM 9 C C6 D16 . . . L 3 40.794 67.411 50.157 1 64.33 ? C6 D16 402 C 1 
HETATM 10 C C7 D16 . . . L 3 40.583 67.585 48.778 1 66.4 ? C7 D16 402 C 1 
HETATM 11 C C8 D16 . . . L 3 41.562 68.142 47.95 1 65.87 ? C8 D16 402 C 1 
HETATM 12 C C8A D16 . . . L 3 42.775 68.536 48.507 1 66.01 ? C8A D16 402 C 1 
HETATM 13 C C9 D16 . . . L 3 39.71 66.761 51.002 1 61.72 ? C9 D16 402 C 1 
HETATM 14 N N10 D16 . . . L 3 39.137 65.659 50.226 1 59.17 ? N10 D16 402 C 1 
HETATM 15 C C11 D16 . . . L 3 41.027 62.684 48.362 1 59.56 ? C11 D16 402 C 1 
HETATM 16 S S13 D16 . . . L 3 39.518 63.487 48.449 1 58.31 ? S13 D16 402 C 1 
HETATM 17 C C14 D16 . . . L 3 39.969 64.616 49.669 1 57 ? C14 D16 402 C 1 
HETATM 18 C C15 D16 . . . L 3 41.281 64.332 50.005 1 55.03 ? C15 D16 402 C 1 
HETATM 19 C C16 D16 . . . L 3 41.829 63.265 49.302 1 57.45 ? C16 D16 402 C 1 
HETATM 20 C C D16 . . . L 3 41.278 61.474 47.514 1 69.51 ? C D16 402 C 1 
HETATM 21 O O D16 . . . L 3 40.725 61.399 46.443 1 69.58 ? O D16 402 C 1 
HETATM 22 N N D16 . . . L 3 42.078 60.416 48.15 1 81.14 ? N D16 402 C 1 
HETATM 23 C CA D16 . . . L 3 42.336 59.091 47.581 1 84.93 ? CA D16 402 C 1 
HETATM 24 C CB D16 . . . L 3 43.522 59.03 46.619 1 85.23 ? CB D16 402 C 1 
HETATM 25 C CG D16 . . . L 3 43.427 59.865 45.306 1 86.66 ? CG D16 402 C 1 
HETATM 26 C CD D16 . . . L 3 42.199 59.699 44.419 1 89.17 ? CD D16 402 C 1 
HETATM 27 O OE1 D16 . . . L 3 41.229 58.958 44.734 1 91.37 ? OE1 D16 402 C 1 
HETATM 28 O OE2 D16 . . . L 3 42.133 60.34 43.331 1 84.98 -1 OE2 D16 402 C 1 
HETATM 29 C CT D16 . . . L 3 42.433 58.082 48.73 1 88.03 ? CT D16 402 C 1 
HETATM 30 O O1 D16 . . . L 3 42.794 56.899 48.538 1 91.57 ? O1 D16 402 C 1 
HETATM 31 O O2 D16 . . . L 3 42.122 58.346 49.933 1 88.84 -1 O2 D16 402 C 1 
HETATM 32 C CP1 D16 . . . L 3 37.722 65.596 49.982 1 60.65 ? CP1 D16 402 C 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    93 
_model_server_stats.query_time_ms           1182 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           32 
#