data_5X60
#
_model_server_result.job_id            j374y7XsvkI8kvnlIpLeaA 
_model_server_result.datetime_utc      '2024-10-18 16:22:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5x60 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":901}' 
#
_entry.id    5X60 
#
_exptl.entry_id    5X60 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5X60 
_cell.length_a            122.005 
_cell.length_b            180.359 
_cell.length_c            233.144 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5X60 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     5X60 
_atom_sites.fract_transf_matrix[1][1]    0.008196 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005544 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004289 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 FAD A 1 901 1837 FAD FAD . 
E 5 GOL A 1 902 901 GOL GOL . 
F 5 GOL A 1 903 902 GOL GOL . 
G 5 GOL A 1 904 903 GOL GOL . 
H 6 HOH A 1 1001 1 HOH HOH . 
H 6 HOH A 2 1002 3 HOH HOH . 
H 6 HOH A 3 1003 10 HOH HOH . 
H 6 HOH A 4 1004 9 HOH HOH . 
H 6 HOH A 5 1005 6 HOH HOH . 
H 6 HOH A 6 1006 7 HOH HOH . 
H 6 HOH A 7 1007 15 HOH HOH . 
H 6 HOH A 8 1008 11 HOH HOH . 
H 6 HOH A 9 1009 17 HOH HOH . 
H 6 HOH A 10 1010 12 HOH HOH . 
H 6 HOH A 11 1011 8 HOH HOH . 
H 6 HOH A 12 1012 2 HOH HOH . 
H 6 HOH A 13 1013 4 HOH HOH . 
H 6 HOH A 14 1014 19 HOH HOH . 
H 6 HOH A 15 1015 5 HOH HOH . 
H 6 HOH A 16 1016 21 HOH HOH . 
H 6 HOH A 17 1017 28 HOH HOH . 
H 6 HOH A 18 1018 58 HOH HOH . 
H 6 HOH A 19 1019 16 HOH HOH . 
H 6 HOH A 20 1020 18 HOH HOH . 
H 6 HOH A 21 1021 13 HOH HOH . 
H 6 HOH A 22 1022 25 HOH HOH . 
H 6 HOH A 23 1023 14 HOH HOH . 
H 6 HOH A 24 1024 37 HOH HOH . 
H 6 HOH A 25 1025 59 HOH HOH . 
H 6 HOH A 26 1026 26 HOH HOH . 
H 6 HOH A 27 1027 29 HOH HOH . 
H 6 HOH A 28 1028 24 HOH HOH . 
H 6 HOH A 29 1029 54 HOH HOH . 
H 6 HOH A 30 1030 22 HOH HOH . 
H 6 HOH A 31 1031 55 HOH HOH . 
H 6 HOH A 32 1032 23 HOH HOH . 
H 6 HOH A 33 1033 30 HOH HOH . 
H 6 HOH A 34 1034 32 HOH HOH . 
H 6 HOH A 35 1035 34 HOH HOH . 
H 6 HOH A 36 1036 31 HOH HOH . 
H 6 HOH A 37 1037 27 HOH HOH . 
H 6 HOH A 38 1038 35 HOH HOH . 
H 6 HOH A 39 1039 20 HOH HOH . 
H 6 HOH A 40 1040 36 HOH HOH . 
H 6 HOH A 41 1041 33 HOH HOH . 
H 6 HOH A 42 1042 38 HOH HOH . 
H 6 HOH A 43 1043 47 HOH HOH . 
H 6 HOH A 44 1044 51 HOH HOH . 
H 6 HOH A 45 1045 60 HOH HOH . 
H 6 HOH A 46 1046 43 HOH HOH . 
H 6 HOH A 47 1047 50 HOH HOH . 
H 6 HOH A 48 1048 53 HOH HOH . 
H 6 HOH A 49 1049 56 HOH HOH . 
H 6 HOH A 50 1050 39 HOH HOH . 
H 6 HOH A 51 1051 46 HOH HOH . 
H 6 HOH A 52 1052 57 HOH HOH . 
H 6 HOH A 53 1053 41 HOH HOH . 
H 6 HOH A 54 1054 40 HOH HOH . 
H 6 HOH A 55 1055 52 HOH HOH . 
H 6 HOH A 56 1056 48 HOH HOH . 
H 6 HOH A 57 1057 44 HOH HOH . 
H 6 HOH A 58 1058 49 HOH HOH . 
I 6 HOH B 1 501 61 HOH HOH . 
J 6 HOH C 1 101 45 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . D 4 -67.421 -21.917 -28.901 1 40.71 ? PA FAD 901 A 1 
HETATM 2 O O1A FAD . . . D 4 -66.515 -21.458 -30.018 1 38.55 ? O1A FAD 901 A 1 
HETATM 3 O O2A FAD . . . D 4 -68.714 -22.607 -29.246 1 40.8 ? O2A FAD 901 A 1 
HETATM 4 O O5B FAD . . . D 4 -67.835 -20.642 -28.011 1 43.2 ? O5B FAD 901 A 1 
HETATM 5 C C5B FAD . . . D 4 -66.932 -19.588 -27.693 1 42.32 ? C5B FAD 901 A 1 
HETATM 6 C C4B FAD . . . D 4 -67.566 -18.244 -28.002 1 41.04 ? C4B FAD 901 A 1 
HETATM 7 O O4B FAD . . . D 4 -66.581 -17.237 -27.8 1 40.67 ? O4B FAD 901 A 1 
HETATM 8 C C3B FAD . . . D 4 -68.041 -18.087 -29.443 1 41.1 ? C3B FAD 901 A 1 
HETATM 9 O O3B FAD . . . D 4 -69.424 -17.733 -29.484 1 42.64 ? O3B FAD 901 A 1 
HETATM 10 C C2B FAD . . . D 4 -67.207 -16.961 -30.013 1 40.55 ? C2B FAD 901 A 1 
HETATM 11 O O2B FAD . . . D 4 -67.924 -16.153 -30.95 1 39.73 ? O2B FAD 901 A 1 
HETATM 12 C C1B FAD . . . D 4 -66.838 -16.209 -28.75 1 40.4 ? C1B FAD 901 A 1 
HETATM 13 N N9A FAD . . . D 4 -65.679 -15.293 -28.874 1 39.81 ? N9A FAD 901 A 1 
HETATM 14 C C8A FAD . . . D 4 -64.53 -15.457 -29.556 1 39.14 ? C8A FAD 901 A 1 
HETATM 15 N N7A FAD . . . D 4 -63.721 -14.378 -29.413 1 38.87 ? N7A FAD 901 A 1 
HETATM 16 C C5A FAD . . . D 4 -64.36 -13.505 -28.623 1 39.13 ? C5A FAD 901 A 1 
HETATM 17 C C6A FAD . . . D 4 -64.085 -12.168 -28.057 1 39.62 ? C6A FAD 901 A 1 
HETATM 18 N N6A FAD . . . D 4 -62.924 -11.527 -28.326 1 40.76 ? N6A FAD 901 A 1 
HETATM 19 N N1A FAD . . . D 4 -65.034 -11.61 -27.268 1 39.83 ? N1A FAD 901 A 1 
HETATM 20 C C2A FAD . . . D 4 -66.203 -12.231 -26.986 1 40.34 ? C2A FAD 901 A 1 
HETATM 21 N N3A FAD . . . D 4 -66.513 -13.45 -27.47 1 39.88 ? N3A FAD 901 A 1 
HETATM 22 C C4A FAD . . . D 4 -65.648 -14.116 -28.271 1 39.44 ? C4A FAD 901 A 1 
HETATM 23 N N1 FAD . . . D 4 -68.993 -31.56 -31.787 1 52.26 ? N1 FAD 901 A 1 
HETATM 24 C C2 FAD . . . D 4 -69.75 -32.67 -31.64 1 53.33 ? C2 FAD 901 A 1 
HETATM 25 O O2 FAD . . . D 4 -69.964 -33.08 -30.48 1 54.74 ? O2 FAD 901 A 1 
HETATM 26 N N3 FAD . . . D 4 -70.264 -33.336 -32.694 1 53.69 ? N3 FAD 901 A 1 
HETATM 27 C C4 FAD . . . D 4 -70.058 -32.939 -33.958 1 51.98 ? C4 FAD 901 A 1 
HETATM 28 O O4 FAD . . . D 4 -70.544 -33.564 -34.926 1 54.79 ? O4 FAD 901 A 1 
HETATM 29 C C4X FAD . . . D 4 -69.235 -31.739 -34.199 1 52.37 ? C4X FAD 901 A 1 
HETATM 30 N N5 FAD . . . D 4 -68.993 -31.28 -35.446 1 53.4 ? N5 FAD 901 A 1 
HETATM 31 C C5X FAD . . . D 4 -68.253 -30.171 -35.646 1 52.57 ? C5X FAD 901 A 1 
HETATM 32 C C6 FAD . . . D 4 -68.043 -29.749 -36.954 1 53.7 ? C6 FAD 901 A 1 
HETATM 33 C C7 FAD . . . D 4 -67.293 -28.608 -37.212 1 54.58 ? C7 FAD 901 A 1 
HETATM 34 C C7M FAD . . . D 4 -67.06 -28.14 -38.625 1 55.72 ? C7M FAD 901 A 1 
HETATM 35 C C8 FAD . . . D 4 -66.723 -27.853 -36.066 1 55.73 ? C8 FAD 901 A 1 
HETATM 36 C C8M FAD . . . D 4 -65.923 -26.605 -36.285 1 57.19 ? C8M FAD 901 A 1 
HETATM 37 C C9 FAD . . . D 4 -66.936 -28.267 -34.757 1 54.11 ? C9 FAD 901 A 1 
HETATM 38 C C9A FAD . . . D 4 -67.678 -29.415 -34.484 1 52.38 ? C9A FAD 901 A 1 
HETATM 39 N N10 FAD . . . D 4 -67.928 -29.876 -33.161 1 51.13 ? N10 FAD 901 A 1 
HETATM 40 C C10 FAD . . . D 4 -68.703 -31.046 -33.003 1 52.38 ? C10 FAD 901 A 1 
HETATM 41 C C1' FAD . . . D 4 -67.379 -29.238 -31.954 1 49.68 ? C1' FAD 901 A 1 
HETATM 42 C C2' FAD . . . D 4 -68.28 -28.264 -31.235 1 47.64 ? C2' FAD 901 A 1 
HETATM 43 O O2' FAD . . . D 4 -68.839 -27.353 -32.179 1 48.67 ? O2' FAD 901 A 1 
HETATM 44 C C3' FAD . . . D 4 -67.425 -27.507 -30.226 1 46.81 ? C3' FAD 901 A 1 
HETATM 45 O O3' FAD . . . D 4 -66.595 -28.389 -29.452 1 46.53 ? O3' FAD 901 A 1 
HETATM 46 C C4' FAD . . . D 4 -68.257 -26.693 -29.249 1 45.88 ? C4' FAD 901 A 1 
HETATM 47 O O4' FAD . . . D 4 -69.407 -26.117 -29.882 1 46.89 ? O4' FAD 901 A 1 
HETATM 48 C C5' FAD . . . D 4 -67.37 -25.594 -28.707 1 44.67 ? C5' FAD 901 A 1 
HETATM 49 O O5' FAD . . . D 4 -68.051 -24.92 -27.669 1 42.97 ? O5' FAD 901 A 1 
HETATM 50 P P FAD . . . D 4 -67.239 -23.845 -26.804 1 41.77 ? P FAD 901 A 1 
HETATM 51 O O1P FAD . . . D 4 -68.292 -23.115 -26.004 1 43.33 ? O1P FAD 901 A 1 
HETATM 52 O O2P FAD . . . D 4 -66.096 -24.567 -26.121 1 39.34 ? O2P FAD 901 A 1 
HETATM 53 O O3P FAD . . . D 4 -66.578 -22.829 -27.874 1 40.75 ? O3P FAD 901 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           239 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           53 
#