data_5X67 # _model_server_result.job_id 49UgfH-h4IeiSYOttoSRDw _model_server_result.datetime_utc '2024-11-27 04:23:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x67 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 5X67 # _exptl.entry_id 5X67 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.336 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-azanyl-6-methyl-5-pyridin-4-ylsulfanyl-3H-quinazolin-4-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5X67 _cell.length_a 108.29 _cell.length_b 108.29 _cell.length_c 106.034 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X67 _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C14 H12 N4 O S' _chem_comp.formula_weight 284.336 _chem_comp.id 7Z9 _chem_comp.mon_nstd_flag . _chem_comp.name 2-azanyl-6-methyl-5-pyridin-4-ylsulfanyl-3H-quinazolin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Nolatrexed;2-Amino-6-methyl-5-(4-pyridylthio)-1H-quinazolin-4-one # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 N18 7Z9 doub 1 n y C19 C20 7Z9 sing 2 n y O12 C11 7Z9 doub 3 n n N18 C17 7Z9 sing 4 n y C20 C15 7Z9 doub 5 n y N10 C11 7Z9 sing 6 n n N10 C9 7Z9 sing 7 n n N13 C9 7Z9 sing 8 n n C11 C4 7Z9 sing 9 n n C17 C16 7Z9 doub 10 n y C15 C16 7Z9 sing 11 n y C15 S14 7Z9 sing 12 n n C9 N8 7Z9 doub 13 n n S14 C3 7Z9 sing 14 n n C4 C3 7Z9 doub 15 n y C4 C5 7Z9 sing 16 n y N8 C5 7Z9 sing 17 n n C3 C2 7Z9 sing 18 n y C5 C6 7Z9 doub 19 n y C2 C1 7Z9 sing 20 n n C2 C7 7Z9 doub 21 n y C6 C7 7Z9 sing 22 n y C17 H1 7Z9 sing 23 n n C20 H2 7Z9 sing 24 n n C19 H3 7Z9 sing 25 n n C16 H4 7Z9 sing 26 n n C1 H5 7Z9 sing 27 n n C1 H6 7Z9 sing 28 n n C1 H7 7Z9 sing 29 n n C6 H8 7Z9 sing 30 n n C7 H9 7Z9 sing 31 n n N10 H10 7Z9 sing 32 n n N13 H11 7Z9 sing 33 n n N13 H12 7Z9 sing 34 n n # _atom_sites.entry_id 5X67 _atom_sites.fract_transf_matrix[1][1] 0.009234 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009234 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009431 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UMP A 1 401 1 UMP UMP . D 3 7Z9 A 1 402 1 7Z9 NTX . E 2 UMP B 1 401 2 UMP UMP . F 3 7Z9 B 1 402 2 7Z9 NTX . G 4 HOH A 1 501 71 HOH HOH . G 4 HOH A 2 502 11 HOH HOH . G 4 HOH A 3 503 165 HOH HOH . G 4 HOH A 4 504 114 HOH HOH . G 4 HOH A 5 505 221 HOH HOH . G 4 HOH A 6 506 110 HOH HOH . G 4 HOH A 7 507 202 HOH HOH . G 4 HOH A 8 508 36 HOH HOH . G 4 HOH A 9 509 139 HOH HOH . G 4 HOH A 10 510 67 HOH HOH . G 4 HOH A 11 511 141 HOH HOH . G 4 HOH A 12 512 131 HOH HOH . G 4 HOH A 13 513 130 HOH HOH . G 4 HOH A 14 514 200 HOH HOH . G 4 HOH A 15 515 153 HOH HOH . G 4 HOH A 16 516 138 HOH HOH . G 4 HOH A 17 517 59 HOH HOH . G 4 HOH A 18 518 231 HOH HOH . G 4 HOH A 19 519 256 HOH HOH . G 4 HOH A 20 520 189 HOH HOH . G 4 HOH A 21 521 102 HOH HOH . G 4 HOH A 22 522 123 HOH HOH . G 4 HOH A 23 523 4 HOH HOH . G 4 HOH A 24 524 16 HOH HOH . G 4 HOH A 25 525 21 HOH HOH . G 4 HOH A 26 526 151 HOH HOH . G 4 HOH A 27 527 90 HOH HOH . G 4 HOH A 28 528 72 HOH HOH . G 4 HOH A 29 529 112 HOH HOH . G 4 HOH A 30 530 70 HOH HOH . G 4 HOH A 31 531 63 HOH HOH . G 4 HOH A 32 532 133 HOH HOH . G 4 HOH A 33 533 135 HOH HOH . G 4 HOH A 34 534 137 HOH HOH . G 4 HOH A 35 535 23 HOH HOH . G 4 HOH A 36 536 116 HOH HOH . G 4 HOH A 37 537 40 HOH HOH . G 4 HOH A 38 538 9 HOH HOH . G 4 HOH A 39 539 198 HOH HOH . G 4 HOH A 40 540 2 HOH HOH . G 4 HOH A 41 541 82 HOH HOH . G 4 HOH A 42 542 191 HOH HOH . G 4 HOH A 43 543 254 HOH HOH . G 4 HOH A 44 544 74 HOH HOH . G 4 HOH A 45 545 79 HOH HOH . G 4 HOH A 46 546 129 HOH HOH . G 4 HOH A 47 547 195 HOH HOH . G 4 HOH A 48 548 188 HOH HOH . G 4 HOH A 49 549 8 HOH HOH . G 4 HOH A 50 550 108 HOH HOH . G 4 HOH A 51 551 38 HOH HOH . G 4 HOH A 52 552 207 HOH HOH . G 4 HOH A 53 553 173 HOH HOH . G 4 HOH A 54 554 95 HOH HOH . G 4 HOH A 55 555 262 HOH HOH . G 4 HOH A 56 556 247 HOH HOH . G 4 HOH A 57 557 257 HOH HOH . G 4 HOH A 58 558 85 HOH HOH . G 4 HOH A 59 559 106 HOH HOH . G 4 HOH A 60 560 142 HOH HOH . G 4 HOH A 61 561 77 HOH HOH . G 4 HOH A 62 562 64 HOH HOH . G 4 HOH A 63 563 49 HOH HOH . G 4 HOH A 64 564 28 HOH HOH . G 4 HOH A 65 565 55 HOH HOH . G 4 HOH A 66 566 209 HOH HOH . G 4 HOH A 67 567 61 HOH HOH . G 4 HOH A 68 568 194 HOH HOH . G 4 HOH A 69 569 33 HOH HOH . G 4 HOH A 70 570 228 HOH HOH . G 4 HOH A 71 571 140 HOH HOH . G 4 HOH A 72 572 46 HOH HOH . G 4 HOH A 73 573 24 HOH HOH . G 4 HOH A 74 574 7 HOH HOH . G 4 HOH A 75 575 76 HOH HOH . G 4 HOH A 76 576 166 HOH HOH . G 4 HOH A 77 577 56 HOH HOH . G 4 HOH A 78 578 226 HOH HOH . G 4 HOH A 79 579 229 HOH HOH . G 4 HOH A 80 580 119 HOH HOH . G 4 HOH A 81 581 223 HOH HOH . G 4 HOH A 82 582 215 HOH HOH . G 4 HOH A 83 583 250 HOH HOH . G 4 HOH A 84 584 170 HOH HOH . G 4 HOH A 85 585 51 HOH HOH . G 4 HOH A 86 586 146 HOH HOH . G 4 HOH A 87 587 169 HOH HOH . G 4 HOH A 88 588 148 HOH HOH . G 4 HOH A 89 589 18 HOH HOH . G 4 HOH A 90 590 62 HOH HOH . G 4 HOH A 91 591 176 HOH HOH . G 4 HOH A 92 592 248 HOH HOH . G 4 HOH A 93 593 218 HOH HOH . G 4 HOH A 94 594 157 HOH HOH . G 4 HOH A 95 595 53 HOH HOH . G 4 HOH A 96 596 213 HOH HOH . G 4 HOH A 97 597 199 HOH HOH . G 4 HOH A 98 598 52 HOH HOH . G 4 HOH A 99 599 261 HOH HOH . G 4 HOH A 100 600 235 HOH HOH . G 4 HOH A 101 601 93 HOH HOH . G 4 HOH A 102 602 243 HOH HOH . G 4 HOH A 103 603 255 HOH HOH . G 4 HOH A 104 604 263 HOH HOH . G 4 HOH A 105 605 124 HOH HOH . G 4 HOH A 106 606 158 HOH HOH . G 4 HOH A 107 607 232 HOH HOH . G 4 HOH A 108 608 197 HOH HOH . G 4 HOH A 109 609 266 HOH HOH . G 4 HOH A 110 610 251 HOH HOH . G 4 HOH A 111 611 159 HOH HOH . G 4 HOH A 112 612 245 HOH HOH . G 4 HOH A 113 613 181 HOH HOH . G 4 HOH A 114 614 210 HOH HOH . G 4 HOH A 115 615 163 HOH HOH . G 4 HOH A 116 616 184 HOH HOH . G 4 HOH A 117 617 233 HOH HOH . G 4 HOH A 118 618 136 HOH HOH . G 4 HOH A 119 619 117 HOH HOH . G 4 HOH A 120 620 109 HOH HOH . G 4 HOH A 121 621 264 HOH HOH . G 4 HOH A 122 622 134 HOH HOH . G 4 HOH A 123 623 259 HOH HOH . G 4 HOH A 124 624 155 HOH HOH . G 4 HOH A 125 625 268 HOH HOH . G 4 HOH A 126 626 237 HOH HOH . G 4 HOH A 127 627 227 HOH HOH . G 4 HOH A 128 628 150 HOH HOH . H 4 HOH B 1 501 171 HOH HOH . H 4 HOH B 2 502 121 HOH HOH . H 4 HOH B 3 503 101 HOH HOH . H 4 HOH B 4 504 19 HOH HOH . H 4 HOH B 5 505 66 HOH HOH . H 4 HOH B 6 506 206 HOH HOH . H 4 HOH B 7 507 190 HOH HOH . H 4 HOH B 8 508 111 HOH HOH . H 4 HOH B 9 509 37 HOH HOH . H 4 HOH B 10 510 87 HOH HOH . H 4 HOH B 11 511 260 HOH HOH . H 4 HOH B 12 512 34 HOH HOH . H 4 HOH B 13 513 107 HOH HOH . H 4 HOH B 14 514 88 HOH HOH . H 4 HOH B 15 515 75 HOH HOH . H 4 HOH B 16 516 44 HOH HOH . H 4 HOH B 17 517 32 HOH HOH . H 4 HOH B 18 518 204 HOH HOH . H 4 HOH B 19 519 68 HOH HOH . H 4 HOH B 20 520 267 HOH HOH . H 4 HOH B 21 521 43 HOH HOH . H 4 HOH B 22 522 58 HOH HOH . H 4 HOH B 23 523 25 HOH HOH . H 4 HOH B 24 524 160 HOH HOH . H 4 HOH B 25 525 48 HOH HOH . H 4 HOH B 26 526 120 HOH HOH . H 4 HOH B 27 527 41 HOH HOH . H 4 HOH B 28 528 47 HOH HOH . H 4 HOH B 29 529 96 HOH HOH . H 4 HOH B 30 530 29 HOH HOH . H 4 HOH B 31 531 220 HOH HOH . H 4 HOH B 32 532 50 HOH HOH . H 4 HOH B 33 533 6 HOH HOH . H 4 HOH B 34 534 89 HOH HOH . H 4 HOH B 35 535 115 HOH HOH . H 4 HOH B 36 536 15 HOH HOH . H 4 HOH B 37 537 20 HOH HOH . H 4 HOH B 38 538 201 HOH HOH . H 4 HOH B 39 539 17 HOH HOH . H 4 HOH B 40 540 84 HOH HOH . H 4 HOH B 41 541 3 HOH HOH . H 4 HOH B 42 542 78 HOH HOH . H 4 HOH B 43 543 73 HOH HOH . H 4 HOH B 44 544 154 HOH HOH . H 4 HOH B 45 545 65 HOH HOH . H 4 HOH B 46 546 57 HOH HOH . H 4 HOH B 47 547 145 HOH HOH . H 4 HOH B 48 548 147 HOH HOH . H 4 HOH B 49 549 98 HOH HOH . H 4 HOH B 50 550 179 HOH HOH . H 4 HOH B 51 551 10 HOH HOH . H 4 HOH B 52 552 94 HOH HOH . H 4 HOH B 53 553 12 HOH HOH . H 4 HOH B 54 554 175 HOH HOH . H 4 HOH B 55 555 30 HOH HOH . H 4 HOH B 56 556 193 HOH HOH . H 4 HOH B 57 557 26 HOH HOH . H 4 HOH B 58 558 203 HOH HOH . H 4 HOH B 59 559 35 HOH HOH . H 4 HOH B 60 560 13 HOH HOH . H 4 HOH B 61 561 69 HOH HOH . H 4 HOH B 62 562 27 HOH HOH . H 4 HOH B 63 563 216 HOH HOH . H 4 HOH B 64 564 128 HOH HOH . H 4 HOH B 65 565 183 HOH HOH . H 4 HOH B 66 566 83 HOH HOH . H 4 HOH B 67 567 91 HOH HOH . H 4 HOH B 68 568 126 HOH HOH . H 4 HOH B 69 569 196 HOH HOH . H 4 HOH B 70 570 42 HOH HOH . H 4 HOH B 71 571 205 HOH HOH . H 4 HOH B 72 572 127 HOH HOH . H 4 HOH B 73 573 1 HOH HOH . H 4 HOH B 74 574 224 HOH HOH . H 4 HOH B 75 575 212 HOH HOH . H 4 HOH B 76 576 185 HOH HOH . H 4 HOH B 77 577 22 HOH HOH . H 4 HOH B 78 578 156 HOH HOH . H 4 HOH B 79 579 100 HOH HOH . H 4 HOH B 80 580 187 HOH HOH . H 4 HOH B 81 581 180 HOH HOH . H 4 HOH B 82 582 60 HOH HOH . H 4 HOH B 83 583 80 HOH HOH . H 4 HOH B 84 584 253 HOH HOH . H 4 HOH B 85 585 152 HOH HOH . H 4 HOH B 86 586 54 HOH HOH . H 4 HOH B 87 587 211 HOH HOH . H 4 HOH B 88 588 118 HOH HOH . H 4 HOH B 89 589 103 HOH HOH . H 4 HOH B 90 590 240 HOH HOH . H 4 HOH B 91 591 149 HOH HOH . H 4 HOH B 92 592 217 HOH HOH . H 4 HOH B 93 593 81 HOH HOH . H 4 HOH B 94 594 45 HOH HOH . H 4 HOH B 95 595 5 HOH HOH . H 4 HOH B 96 596 105 HOH HOH . H 4 HOH B 97 597 31 HOH HOH . H 4 HOH B 98 598 164 HOH HOH . H 4 HOH B 99 599 144 HOH HOH . H 4 HOH B 100 600 113 HOH HOH . H 4 HOH B 101 601 167 HOH HOH . H 4 HOH B 102 602 92 HOH HOH . H 4 HOH B 103 603 239 HOH HOH . H 4 HOH B 104 604 125 HOH HOH . H 4 HOH B 105 605 97 HOH HOH . H 4 HOH B 106 606 104 HOH HOH . H 4 HOH B 107 607 86 HOH HOH . H 4 HOH B 108 608 236 HOH HOH . H 4 HOH B 109 609 172 HOH HOH . H 4 HOH B 110 610 99 HOH HOH . H 4 HOH B 111 611 219 HOH HOH . H 4 HOH B 112 612 132 HOH HOH . H 4 HOH B 113 613 178 HOH HOH . H 4 HOH B 114 614 222 HOH HOH . H 4 HOH B 115 615 244 HOH HOH . H 4 HOH B 116 616 234 HOH HOH . H 4 HOH B 117 617 161 HOH HOH . H 4 HOH B 118 618 168 HOH HOH . H 4 HOH B 119 619 249 HOH HOH . H 4 HOH B 120 620 182 HOH HOH . H 4 HOH B 121 621 14 HOH HOH . H 4 HOH B 122 622 122 HOH HOH . H 4 HOH B 123 623 258 HOH HOH . H 4 HOH B 124 624 174 HOH HOH . H 4 HOH B 125 625 177 HOH HOH . H 4 HOH B 126 626 246 HOH HOH . H 4 HOH B 127 627 265 HOH HOH . H 4 HOH B 128 628 143 HOH HOH . H 4 HOH B 129 629 242 HOH HOH . H 4 HOH B 130 630 208 HOH HOH . H 4 HOH B 131 631 39 HOH HOH . H 4 HOH B 132 632 192 HOH HOH . H 4 HOH B 133 633 186 HOH HOH . H 4 HOH B 134 634 252 HOH HOH . H 4 HOH B 135 635 241 HOH HOH . H 4 HOH B 136 636 225 HOH HOH . H 4 HOH B 137 637 162 HOH HOH . H 4 HOH B 138 638 230 HOH HOH . H 4 HOH B 139 639 238 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 7Z9 . . . D 3 34.985 9.583 10.993 1 17.69 ? C15 7Z9 402 A 1 HETATM 2 C C17 7Z9 . . . D 3 36.471 7.71 10.861 1 18.79 ? C17 7Z9 402 A 1 HETATM 3 C C20 7Z9 . . . D 3 34.088 8.907 10.182 1 19.25 ? C20 7Z9 402 A 1 HETATM 4 C C19 7Z9 . . . D 3 34.399 7.645 9.772 1 20.36 ? C19 7Z9 402 A 1 HETATM 5 C C11 7Z9 . . . D 3 37.297 12.617 10.616 1 15.98 ? C11 7Z9 402 A 1 HETATM 6 C C16 7Z9 . . . D 3 36.206 8.974 11.331 1 18.19 ? C16 7Z9 402 A 1 HETATM 7 C C1 7Z9 . . . D 3 34.565 10.898 14.486 1 15.51 ? C1 7Z9 402 A 1 HETATM 8 C C2 7Z9 . . . D 3 35.821 11.538 14.021 1 15.05 ? C2 7Z9 402 A 1 HETATM 9 C C3 7Z9 . . . D 3 35.925 11.777 12.644 1 16.14 ? C3 7Z9 402 A 1 HETATM 10 C C4 7Z9 . . . D 3 37.123 12.345 12.108 1 15.48 ? C4 7Z9 402 A 1 HETATM 11 C C5 7Z9 . . . D 3 38.11 12.719 12.946 1 14.8 ? C5 7Z9 402 A 1 HETATM 12 C C6 7Z9 . . . D 3 38.015 12.513 14.364 1 14.78 ? C6 7Z9 402 A 1 HETATM 13 C C7 7Z9 . . . D 3 36.843 11.927 14.882 1 14.76 ? C7 7Z9 402 A 1 HETATM 14 N N8 7Z9 . . . D 3 39.298 13.298 12.43 1 13.2 ? N8 7Z9 402 A 1 HETATM 15 C C9 7Z9 . . . D 3 39.466 13.538 11.076 1 14.38 ? C9 7Z9 402 A 1 HETATM 16 N N10 7Z9 . . . D 3 38.452 13.112 10.155 1 15.22 ? N10 7Z9 402 A 1 HETATM 17 O O12 7Z9 . . . D 3 36.469 12.361 9.79 1 15.97 ? O12 7Z9 402 A 1 HETATM 18 N N13 7Z9 . . . D 3 40.619 14.133 10.522 1 13.77 ? N13 7Z9 402 A 1 HETATM 19 S S14 7Z9 . . . D 3 34.56 11.188 11.612 1 18.7 ? S14 7Z9 402 A 1 HETATM 20 N N18 7Z9 . . . D 3 35.575 7.062 10.098 1 20.59 ? N18 7Z9 402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #