data_5X6C # _model_server_result.job_id 9RryYTP5QVSle1PAjknojQ _model_server_result.datetime_utc '2024-10-20 03:27:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x6c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 5X6C # _exptl.entry_id 5X6C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5X6C _cell.length_a 279.821 _cell.length_b 279.821 _cell.length_c 279.821 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X6C _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 14_545 -x,-y-1/2,z -1 0 0 0 -1 0 0 0 1 0 -139.9105 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 5X6C _atom_sites.fract_transf_matrix[1][1] 0.003574 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003574 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003574 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ATP A 1 601 601 ATP ATP . F 4 SO4 A 1 602 602 SO4 SO4 . G 3 ATP B 1 601 601 ATP ATP . H 4 SO4 B 1 602 602 SO4 SO4 . I 5 HOH A 1 701 2 HOH HOH . I 5 HOH A 2 702 97 HOH HOH . I 5 HOH A 3 703 80 HOH HOH . I 5 HOH A 4 704 175 HOH HOH . I 5 HOH A 5 705 24 HOH HOH . I 5 HOH A 6 706 42 HOH HOH . I 5 HOH A 7 707 79 HOH HOH . I 5 HOH A 8 708 15 HOH HOH . I 5 HOH A 9 709 123 HOH HOH . I 5 HOH A 10 710 121 HOH HOH . I 5 HOH A 11 711 13 HOH HOH . I 5 HOH A 12 712 39 HOH HOH . I 5 HOH A 13 713 107 HOH HOH . I 5 HOH A 14 714 4 HOH HOH . I 5 HOH A 15 715 26 HOH HOH . I 5 HOH A 16 716 132 HOH HOH . I 5 HOH A 17 717 84 HOH HOH . I 5 HOH A 18 718 52 HOH HOH . I 5 HOH A 19 719 122 HOH HOH . I 5 HOH A 20 720 119 HOH HOH . I 5 HOH A 21 721 115 HOH HOH . I 5 HOH A 22 722 135 HOH HOH . I 5 HOH A 23 723 92 HOH HOH . I 5 HOH A 24 724 114 HOH HOH . I 5 HOH A 25 725 20 HOH HOH . I 5 HOH A 26 726 83 HOH HOH . I 5 HOH A 27 727 19 HOH HOH . I 5 HOH A 28 728 127 HOH HOH . I 5 HOH A 29 729 75 HOH HOH . I 5 HOH A 30 730 38 HOH HOH . I 5 HOH A 31 731 134 HOH HOH . I 5 HOH A 32 732 130 HOH HOH . I 5 HOH A 33 733 106 HOH HOH . I 5 HOH A 34 734 120 HOH HOH . I 5 HOH A 35 735 129 HOH HOH . I 5 HOH A 36 736 133 HOH HOH . I 5 HOH A 37 737 138 HOH HOH . I 5 HOH A 38 738 136 HOH HOH . I 5 HOH A 39 739 116 HOH HOH . I 5 HOH A 40 740 94 HOH HOH . I 5 HOH A 41 741 124 HOH HOH . I 5 HOH A 42 742 62 HOH HOH . I 5 HOH A 43 743 145 HOH HOH . I 5 HOH A 44 744 125 HOH HOH . I 5 HOH A 45 745 21 HOH HOH . I 5 HOH A 46 746 126 HOH HOH . I 5 HOH A 47 747 137 HOH HOH . I 5 HOH A 48 748 28 HOH HOH . I 5 HOH A 49 749 14 HOH HOH . I 5 HOH A 50 750 139 HOH HOH . I 5 HOH A 51 751 117 HOH HOH . I 5 HOH A 52 752 100 HOH HOH . I 5 HOH A 53 753 131 HOH HOH . J 5 HOH B 1 701 1 HOH HOH . J 5 HOH B 2 702 111 HOH HOH . J 5 HOH B 3 703 74 HOH HOH . J 5 HOH B 4 704 171 HOH HOH . J 5 HOH B 5 705 88 HOH HOH . J 5 HOH B 6 706 96 HOH HOH . J 5 HOH B 7 707 174 HOH HOH . J 5 HOH B 8 708 56 HOH HOH . J 5 HOH B 9 709 17 HOH HOH . J 5 HOH B 10 710 3 HOH HOH . J 5 HOH B 11 711 77 HOH HOH . J 5 HOH B 12 712 149 HOH HOH . J 5 HOH B 13 713 146 HOH HOH . J 5 HOH B 14 714 168 HOH HOH . J 5 HOH B 15 715 128 HOH HOH . J 5 HOH B 16 716 164 HOH HOH . J 5 HOH B 17 717 73 HOH HOH . J 5 HOH B 18 718 172 HOH HOH . J 5 HOH B 19 719 85 HOH HOH . J 5 HOH B 20 720 143 HOH HOH . J 5 HOH B 21 721 72 HOH HOH . J 5 HOH B 22 722 152 HOH HOH . J 5 HOH B 23 723 147 HOH HOH . J 5 HOH B 24 724 81 HOH HOH . J 5 HOH B 25 725 142 HOH HOH . J 5 HOH B 26 726 78 HOH HOH . J 5 HOH B 27 727 150 HOH HOH . J 5 HOH B 28 728 151 HOH HOH . J 5 HOH B 29 729 162 HOH HOH . J 5 HOH B 30 730 23 HOH HOH . J 5 HOH B 31 731 158 HOH HOH . J 5 HOH B 32 732 46 HOH HOH . J 5 HOH B 33 733 153 HOH HOH . J 5 HOH B 34 734 37 HOH HOH . J 5 HOH B 35 735 16 HOH HOH . J 5 HOH B 36 736 169 HOH HOH . J 5 HOH B 37 737 157 HOH HOH . J 5 HOH B 38 738 144 HOH HOH . J 5 HOH B 39 739 40 HOH HOH . J 5 HOH B 40 740 118 HOH HOH . J 5 HOH B 41 741 159 HOH HOH . J 5 HOH B 42 742 22 HOH HOH . J 5 HOH B 43 743 148 HOH HOH . J 5 HOH B 44 744 166 HOH HOH . J 5 HOH B 45 745 167 HOH HOH . J 5 HOH B 46 746 163 HOH HOH . J 5 HOH B 47 747 156 HOH HOH . J 5 HOH B 48 748 141 HOH HOH . J 5 HOH B 49 749 140 HOH HOH . J 5 HOH B 50 750 165 HOH HOH . J 5 HOH B 51 751 173 HOH HOH . J 5 HOH B 52 752 154 HOH HOH . J 5 HOH B 53 753 155 HOH HOH . J 5 HOH B 54 754 170 HOH HOH . J 5 HOH B 55 755 160 HOH HOH . J 5 HOH B 56 756 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 3 4.618 -87.344 -7.991 1 87.67 ? PG ATP 601 A 1 HETATM 2 O O1G ATP . . . E 3 6.094 -87.086 -7.84 1 70.5 ? O1G ATP 601 A 1 HETATM 3 O O2G ATP . . . E 3 3.786 -86.192 -7.479 1 57.13 ? O2G ATP 601 A 1 HETATM 4 O O3G ATP . . . E 3 4.154 -88.699 -7.508 1 79.88 ? O3G ATP 601 A 1 HETATM 5 P PB ATP . . . E 3 4.618 -88.669 -10.558 1 61.67 ? PB ATP 601 A 1 HETATM 6 O O1B ATP . . . E 3 5.515 -88.256 -11.699 1 33.72 ? O1B ATP 601 A 1 HETATM 7 O O2B ATP . . . E 3 5.031 -89.867 -9.721 1 46.89 ? O2B ATP 601 A 1 HETATM 8 O O3B ATP . . . E 3 4.392 -87.39 -9.596 1 65.33 ? O3B ATP 601 A 1 HETATM 9 P PA ATP . . . E 3 1.749 -88.06 -10.755 1 54.37 ? PA ATP 601 A 1 HETATM 10 O O1A ATP . . . E 3 0.544 -88.898 -11.088 1 53.63 ? O1A ATP 601 A 1 HETATM 11 O O2A ATP . . . E 3 1.922 -87.597 -9.351 1 49.54 ? O2A ATP 601 A 1 HETATM 12 O O3A ATP . . . E 3 3.116 -88.857 -11.172 1 59.2 ? O3A ATP 601 A 1 HETATM 13 O O5' ATP . . . E 3 1.546 -86.776 -11.712 1 47.73 ? O5' ATP 601 A 1 HETATM 14 C C5' ATP . . . E 3 0.649 -86.79 -12.837 1 40.9 ? C5' ATP 601 A 1 HETATM 15 C C4' ATP . . . E 3 1.206 -86.041 -14.075 1 44.3 ? C4' ATP 601 A 1 HETATM 16 O O4' ATP . . . E 3 1.467 -84.658 -13.824 1 44.9 ? O4' ATP 601 A 1 HETATM 17 C C3' ATP . . . E 3 2.507 -86.596 -14.633 1 41.24 ? C3' ATP 601 A 1 HETATM 18 O O3' ATP . . . E 3 2.313 -87.149 -15.926 1 41.76 ? O3' ATP 601 A 1 HETATM 19 C C2' ATP . . . E 3 3.423 -85.439 -14.869 1 36.61 ? C2' ATP 601 A 1 HETATM 20 O O2' ATP . . . E 3 3.348 -85.221 -16.261 1 36.48 ? O2' ATP 601 A 1 HETATM 21 C C1' ATP . . . E 3 2.781 -84.254 -14.216 1 36.45 ? C1' ATP 601 A 1 HETATM 22 N N9 ATP . . . E 3 3.535 -83.795 -13.016 1 35.88 ? N9 ATP 601 A 1 HETATM 23 C C8 ATP . . . E 3 3.273 -84.132 -11.746 1 42.9 ? C8 ATP 601 A 1 HETATM 24 N N7 ATP . . . E 3 4.121 -83.534 -10.877 1 40.03 ? N7 ATP 601 A 1 HETATM 25 C C5 ATP . . . E 3 4.942 -82.781 -11.601 1 34.89 ? C5 ATP 601 A 1 HETATM 26 C C6 ATP . . . E 3 6.061 -81.886 -11.318 1 34.97 ? C6 ATP 601 A 1 HETATM 27 N N6 ATP . . . E 3 6.468 -81.675 -10.058 1 39.78 ? N6 ATP 601 A 1 HETATM 28 N N1 ATP . . . E 3 6.671 -81.281 -12.335 1 35.67 ? N1 ATP 601 A 1 HETATM 29 C C2 ATP . . . E 3 6.277 -81.488 -13.587 1 37.66 ? C2 ATP 601 A 1 HETATM 30 N N3 ATP . . . E 3 5.26 -82.283 -13.923 1 38.14 ? N3 ATP 601 A 1 HETATM 31 C C4 ATP . . . E 3 4.559 -82.952 -12.994 1 35.31 ? C4 ATP 601 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #