data_5X6F # _model_server_result.job_id -ouSAQjcFEaT9cREdYUdPg _model_server_result.datetime_utc '2024-10-19 19:36:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x6f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":201}' # _entry.id 5X6F # _exptl.entry_id 5X6F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.25 _cell.angle_gamma 90 _cell.entry_id 5X6F _cell.length_a 112.691 _cell.length_b 65.035 _cell.length_c 124.984 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X6F _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,N,Q 1 1,2 B,D,F,G,H,I,J,K,L,M,O,P,R 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 24.383169 0 -122.582467 3 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 M N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 5X6F _atom_sites.fract_transf_matrix[1][1] 0.008874 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001766 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015376 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008158 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 IPA B 1 201 13 IPA IPA . H 3 GOL B 1 202 1 GOL GOL . I 3 GOL D 1 201 4 GOL GOL . J 3 GOL D 1 202 5 GOL GOL . K 3 GOL D 1 203 7 GOL GOL . L 2 IPA F 1 201 14 IPA IPA . M 3 GOL F 1 202 3 GOL GOL . N 4 HOH A 1 201 22 HOH HOH . O 4 HOH B 1 301 7 HOH HOH . O 4 HOH B 2 302 45 HOH HOH . O 4 HOH B 3 303 10 HOH HOH . O 4 HOH B 4 304 17 HOH HOH . O 4 HOH B 5 305 8 HOH HOH . O 4 HOH B 6 306 1 HOH HOH . O 4 HOH B 7 307 2 HOH HOH . O 4 HOH B 8 308 20 HOH HOH . P 4 HOH D 1 301 26 HOH HOH . P 4 HOH D 2 302 34 HOH HOH . P 4 HOH D 3 303 36 HOH HOH . P 4 HOH D 4 304 53 HOH HOH . P 4 HOH D 5 305 28 HOH HOH . P 4 HOH D 6 306 14 HOH HOH . P 4 HOH D 7 307 54 HOH HOH . P 4 HOH D 8 308 9 HOH HOH . Q 4 HOH E 1 201 33 HOH HOH . R 4 HOH F 1 301 47 HOH HOH . R 4 HOH F 2 302 21 HOH HOH . R 4 HOH F 3 303 19 HOH HOH . R 4 HOH F 4 304 15 HOH HOH . R 4 HOH F 5 305 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 3 16.975 -21.577 22.314 1 47.79 ? C1 GOL 201 D 1 HETATM 2 O O1 GOL . . . I 3 15.993 -22.569 22.526 1 47.3 ? O1 GOL 201 D 1 HETATM 3 C C2 GOL . . . I 3 16.448 -20.471 21.402 1 48.66 ? C2 GOL 201 D 1 HETATM 4 O O2 GOL . . . I 3 15.051 -20.297 21.539 1 49.73 ? O2 GOL 201 D 1 HETATM 5 C C3 GOL . . . I 3 16.811 -20.768 19.952 1 48.16 ? C3 GOL 201 D 1 HETATM 6 O O3 GOL . . . I 3 15.782 -20.333 19.086 1 47.7 ? O3 GOL 201 D 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #